HEADER LIGASE 31-DEC-09 2X1M TITLE CRYSTAL STRUCTURE OF MYCOBACTERIUM SMEGMATIS METHIONYL-TRNA SYNTHETASE TITLE 2 IN COMPLEX WITH METHIONINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHIONYL-TRNA SYNTHETASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 2-515; COMPND 5 EC: 6.1.1.10; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM SMEGMATIS; SOURCE 3 ORGANISM_TAXID: 246196; SOURCE 4 STRAIN: MC2 155; SOURCE 5 ATCC: 700084; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 STAR (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET 101 D-TOPO KEYWDS NUCLEOTIDE-BINDING, PROTEIN BIOSYNTHESIS, LIGASE, AMINOACYL-TRNA KEYWDS 2 SYNTHETASE EXPDTA X-RAY DIFFRACTION AUTHOR H.INGVARSSON,T.A.JONES,T.UNGE REVDAT 6 20-DEC-23 2X1M 1 REMARK REVDAT 5 30-JAN-19 2X1M 1 REMARK REVDAT 4 17-JAN-18 2X1M 1 REMARK REVDAT 3 29-SEP-10 2X1M 1 JRNL REVDAT 2 08-SEP-10 2X1M 1 JRNL REVDAT 1 28-JUL-10 2X1M 0 JRNL AUTH H.INGVARSSON,T.UNGE JRNL TITL FLEXIBILITY AND COMMUNICATION WITHIN THE STRUCTURE OF THE JRNL TITL 2 MYCOBACTERIUM SMEGMATIS METHIONYL-TRNA SYNTHETASE. JRNL REF FEBS J. V. 277 3947 2010 JRNL REFN ISSN 1742-464X JRNL PMID 20796028 JRNL DOI 10.1111/J.1742-4658.2010.07784.X REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.INGVARSSON,T.A.JONES,T.UNGE REMARK 1 TITL CRYSTALLIZATION OF MYCOBACTERIUM SMEGMATIS METHIONYL-TRNA REMARK 1 TITL 2 SYNTHETASE IN THE PRESENCE OF METHIONINE AND ADENOSINE. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 65 618 2009 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 19478446 REMARK 1 DOI 10.1107/S1744309109016704 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 14405 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 756 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1044 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.20 REMARK 3 BIN R VALUE (WORKING SET) : 0.2890 REMARK 3 BIN FREE R VALUE SET COUNT : 56 REMARK 3 BIN FREE R VALUE : 0.4480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4076 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 16 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 57.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.58000 REMARK 3 B22 (A**2) : -2.58000 REMARK 3 B33 (A**2) : 3.87000 REMARK 3 B12 (A**2) : -1.29000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.850 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.380 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.270 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.770 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.923 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.892 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4210 ; 0.005 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5730 ; 0.811 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 510 ; 3.896 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 208 ;33.318 ;23.173 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 659 ;13.177 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;11.379 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 619 ; 0.052 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3278 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 134 ; 0.083 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 23 ; 0.110 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 1 ; 0.096 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2X1M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-DEC-09. REMARK 100 THE DEPOSITION ID IS D_1290042270. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JAN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I911-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.038 REMARK 200 MONOCHROMATOR : BENT SI (111) CRYSTAL, REMARK 200 HORIZONTALLY FOCUSING REMARK 200 OPTICS : MULTILAYER MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15164 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 7.60 REMARK 200 R MERGE FOR SHELL (I) : 0.36000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1A8H REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2 M NAH2PO4, 800 MM K2HPO4, 200 MM REMARK 280 LI2SO4, 100 MM CAPS, PH 7.0, VAPOR DIFFUSION, HANGING DROPS, REMARK 280 TEMPERATURE 293 K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 104.99500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 60.61889 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 24.62667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 104.99500 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 60.61889 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 24.62667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 104.99500 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 60.61889 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 24.62667 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 104.99500 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 60.61889 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 24.62667 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 104.99500 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 60.61889 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 24.62667 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 104.99500 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 60.61889 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 24.62667 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 121.23778 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 49.25333 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 121.23778 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 49.25333 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 121.23778 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 49.25333 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 121.23778 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 49.25333 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 121.23778 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 49.25333 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 121.23778 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 49.25333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -8 REMARK 465 ALA A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 GLY A 0 REMARK 465 GLY A 1 REMARK 465 GLN A 513 REMARK 465 ASN A 514 REMARK 465 ASP A 515 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 88 49.64 -91.20 REMARK 500 ASP A 221 -3.88 73.11 REMARK 500 ASP A 245 90.53 -66.27 REMARK 500 SER A 305 -36.24 -130.02 REMARK 500 ASN A 355 -63.17 -98.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MET A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2HP A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CXS A 602 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2X1L RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MYCOBACTERIUM SMEGMATIS METHIONYL-TRNA REMARK 900 SYNTHETASE IN COMPLEX WITH METHIONINE AND ADENOSINE DBREF 2X1M A 2 515 UNP A0R3E2 A0R3E2_MYCS2 2 515 SEQADV 2X1M MET A -8 UNP A0R3E2 EXPRESSION TAG SEQADV 2X1M ALA A -7 UNP A0R3E2 EXPRESSION TAG SEQADV 2X1M HIS A -6 UNP A0R3E2 EXPRESSION TAG SEQADV 2X1M HIS A -5 UNP A0R3E2 EXPRESSION TAG SEQADV 2X1M HIS A -4 UNP A0R3E2 EXPRESSION TAG SEQADV 2X1M HIS A -3 UNP A0R3E2 EXPRESSION TAG SEQADV 2X1M HIS A -2 UNP A0R3E2 EXPRESSION TAG SEQADV 2X1M HIS A -1 UNP A0R3E2 EXPRESSION TAG SEQADV 2X1M GLY A 0 UNP A0R3E2 EXPRESSION TAG SEQADV 2X1M GLY A 1 UNP A0R3E2 EXPRESSION TAG SEQRES 1 A 524 MET ALA HIS HIS HIS HIS HIS HIS GLY GLY SER GLU PRO SEQRES 2 A 524 PHE TYR ILE THR THR ALA ILE ALA TYR PRO ASN GLY VAL SEQRES 3 A 524 PRO HIS ILE GLY HIS ALA TYR GLU TYR ILE ALA THR ASP SEQRES 4 A 524 ALA ILE ALA ARG PHE LYS ARG LEU ASP GLY TYR ASP VAL SEQRES 5 A 524 ARG TYR LEU THR GLY THR ASP VAL HIS GLY GLN LYS MET SEQRES 6 A 524 ALA GLU THR ALA ALA LYS GLU GLY ILE PRO ALA ALA GLU SEQRES 7 A 524 LEU ALA ARG ARG ASN SER ASP VAL PHE GLN ARG LEU GLN SEQRES 8 A 524 GLU LYS LEU ASN ILE SER PHE ASP ARG PHE ILE ARG THR SEQRES 9 A 524 SER ASP ALA ASP HIS TYR GLU ALA SER LYS ALA ILE TRP SEQRES 10 A 524 LYS ARG MET ALA ASP ALA GLY ASP ILE TYR LEU ASP ALA SEQRES 11 A 524 TYR LYS GLY TRP TYR SER ILE ARG ASP GLU ARG PHE PHE SEQRES 12 A 524 THR GLU ASN GLU THR THR GLU GLN PRO ASP GLY THR ARG SEQRES 13 A 524 ILE ALA THR GLU THR GLY ALA PRO VAL THR TRP THR GLU SEQRES 14 A 524 GLU GLN THR TYR PHE PHE ARG LEU SER ALA TYR THR ASP SEQRES 15 A 524 ARG LEU LEU ALA LEU TYR GLU GLU HIS PRO GLU PHE ILE SEQRES 16 A 524 GLY PRO ASP ALA ARG ARG ASN GLU ILE VAL SER PHE VAL SEQRES 17 A 524 SER GLY GLY LEU LYS ASP LEU SER ILE SER ARG THR THR SEQRES 18 A 524 PHE ASP TRP GLY VAL PRO VAL PRO ASP HIS PRO ASP HIS SEQRES 19 A 524 VAL MET TYR VAL TRP VAL ASP ALA LEU THR ASN TYR LEU SEQRES 20 A 524 THR GLY VAL GLY PHE PRO ASP THR GLU SER GLU SER PHE SEQRES 21 A 524 ARG ARG TYR TRP PRO ALA ASP LEU HIS MET ILE GLY LYS SEQRES 22 A 524 ASP ILE ILE ARG PHE HIS THR VAL TYR TRP PRO ALA PHE SEQRES 23 A 524 LEU MET SER ALA GLY LEU PRO LEU PRO LYS ARG ILE PHE SEQRES 24 A 524 ALA HIS GLY TRP LEU LEU ASN ARG GLY GLU LYS MET SER SEQRES 25 A 524 LYS SER ILE GLY ASN VAL VAL ASP PRO VAL ASN LEU VAL SEQRES 26 A 524 ASP THR PHE GLY LEU ASP GLN VAL ARG TYR PHE LEU LEU SEQRES 27 A 524 ARG GLU VAL PRO PHE GLY GLN ASP GLY SER TYR ASN GLU SEQRES 28 A 524 ASP ALA ILE ILE GLY ARG VAL ASN ALA ASP LEU ALA ASN SEQRES 29 A 524 GLU LEU GLY ASN LEU ALA GLN ARG SER LEU SER MET VAL SEQRES 30 A 524 ALA LYS ASN LEU GLY ALA ALA VAL PRO ASP PRO GLY GLU SEQRES 31 A 524 PHE THR ASP GLU ASP THR ALA LEU LEU ALA ALA ALA ASP SEQRES 32 A 524 ALA LEU LEU GLU ARG VAL ARG GLU HIS PHE ASP VAL PRO SEQRES 33 A 524 ALA MET HIS LEU ALA LEU GLU ALA ILE TRP SER VAL LEU SEQRES 34 A 524 GLY ALA ALA ASN ARG TYR PHE SER ALA GLN GLU PRO TRP SEQRES 35 A 524 VAL LEU ARG LYS SER ASP ALA ALA GLU ASP GLN GLN ARG SEQRES 36 A 524 PHE ARG THR VAL LEU TYR THR THR LEU GLU VAL VAL ARG SEQRES 37 A 524 ILE ALA SER LEU LEU LEU GLN PRO VAL MET PRO GLU SER SEQRES 38 A 524 THR ALA LYS LEU LEU ASP LEU LEU GLY GLN PRO THR ASP SEQRES 39 A 524 GLU ARG ASP PHE SER ALA ILE ALA ASN ARG ILE LYS PRO SEQRES 40 A 524 GLY THR SER LEU PRO ALA PRO SER GLY ILE PHE PRO ARG SEQRES 41 A 524 TYR GLN ASN ASP HET MET A 600 9 HET 2HP A 601 5 HET CXS A 602 14 HETNAM MET METHIONINE HETNAM 2HP DIHYDROGENPHOSPHATE ION HETNAM CXS 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID FORMUL 2 MET C5 H11 N O2 S FORMUL 3 2HP H2 O4 P 1- FORMUL 4 CXS C9 H19 N O3 S FORMUL 5 HOH *16(H2 O) HELIX 1 1 HIS A 19 ASP A 39 1 21 HELIX 2 2 GLY A 53 GLU A 63 1 11 HELIX 3 3 PRO A 66 LEU A 85 1 20 HELIX 4 4 ASP A 97 ALA A 114 1 18 HELIX 5 5 LEU A 168 ALA A 170 5 3 HELIX 6 6 TYR A 171 HIS A 182 1 12 HELIX 7 7 PRO A 188 GLY A 201 1 14 HELIX 8 8 TYR A 228 THR A 235 1 8 HELIX 9 9 THR A 235 GLY A 240 1 6 HELIX 10 10 SER A 248 TRP A 255 1 8 HELIX 11 11 ILE A 266 VAL A 272 1 7 HELIX 12 12 VAL A 272 GLY A 282 1 11 HELIX 13 13 ASP A 311 GLY A 320 1 10 HELIX 14 14 GLY A 320 VAL A 332 1 13 HELIX 15 15 ASN A 341 ASP A 352 1 12 HELIX 16 16 LEU A 357 LEU A 372 1 16 HELIX 17 17 THR A 383 ALA A 395 1 13 HELIX 18 18 ALA A 395 ASP A 405 1 11 HELIX 19 19 ALA A 408 GLU A 431 1 24 HELIX 20 20 GLU A 431 ARG A 436 1 6 HELIX 21 21 ALA A 440 LEU A 465 1 26 HELIX 22 22 MET A 469 LEU A 480 1 12 HELIX 23 23 ASP A 488 ILE A 492 5 5 SHEET 1 AA 6 ARG A 91 ARG A 94 0 SHEET 2 AA 6 ASP A 42 THR A 49 1 O THR A 47 N ILE A 93 SHEET 3 AA 6 PRO A 4 THR A 9 1 O PHE A 5 N ARG A 44 SHEET 4 AA 6 LEU A 259 GLY A 263 1 O LEU A 259 N THR A 8 SHEET 5 AA 6 ILE A 289 HIS A 292 1 O PHE A 290 N ILE A 262 SHEET 6 AA 6 ILE A 186 GLY A 187 1 O GLY A 187 N ALA A 291 SHEET 1 AB 4 ARG A 132 PHE A 134 0 SHEET 2 AB 4 ILE A 117 SER A 127 -1 O TRP A 125 N PHE A 134 SHEET 3 AB 4 VAL A 156 PHE A 166 -1 O THR A 157 N TYR A 126 SHEET 4 AB 4 LEU A 206 SER A 207 -1 O LEU A 206 N PHE A 166 SHEET 1 AC 2 THR A 139 GLU A 141 0 SHEET 2 AC 2 ARG A 147 ALA A 149 -1 O ILE A 148 N THR A 140 SHEET 1 AD 3 SER A 209 ARG A 210 0 SHEET 2 AD 3 HIS A 222 MET A 227 -1 O VAL A 226 N ARG A 210 SHEET 3 AD 3 PRO A 218 VAL A 219 -1 O VAL A 219 N HIS A 222 SHEET 1 AE 2 LEU A 295 ASN A 297 0 SHEET 2 AE 2 GLY A 338 TYR A 340 1 O GLY A 338 N LEU A 296 CISPEP 1 GLY A 187 PRO A 188 0 -2.20 CISPEP 2 PHE A 243 PRO A 244 0 7.30 CISPEP 3 TRP A 255 PRO A 256 0 3.57 CISPEP 4 VAL A 406 PRO A 407 0 -2.19 SITE 1 AC1 9 ILE A 11 ALA A 12 TYR A 13 ASP A 50 SITE 2 AC1 9 TRP A 230 ALA A 233 TYR A 237 ILE A 266 SITE 3 AC1 9 HIS A 270 SITE 1 AC2 4 PRO A 188 ASP A 189 ARG A 288 VAL A 406 SITE 1 AC3 9 ALA A 114 GLY A 115 ASP A 116 ARG A 167 SITE 2 AC3 9 ALA A 170 TYR A 171 ARG A 174 TYR A 452 SITE 3 AC3 9 ARG A 495 CRYST1 209.990 209.990 73.880 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004762 0.002749 0.000000 0.00000 SCALE2 0.000000 0.005499 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013535 0.00000