HEADER CARBOHYDRATE-BINDING PROTEIN 19-JAN-10 2X34 TITLE STRUCTURE OF A POLYISOPRENOID BINDING DOMAIN FROM SACCHAROPHAGUS TITLE 2 DEGRADANS IMPLICATED IN PLANT CELL WALL BREAKDOWN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELLULOSE-BINDING PROTEIN, X158; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: YCEI-LIKE DOMAIN, RESIDUES 199-371; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: UBIQUINONE-8 BOUND TO THE PROTEIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROPHAGUS DEGRADANS; SOURCE 3 ORGANISM_TAXID: 203122; SOURCE 4 STRAIN: 2-40; SOURCE 5 ATCC: 43961; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PDEST17 KEYWDS CARBOHYDRATE-BINDING PROTEIN, OXIDOREDUCTION, MARINE BACTERIA, KEYWDS 2 POLYISOPRENOID TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR F.VINCENT,D.DAL MOLIN,R.M.WEINER,Y.BOURNE,B.HENRISSAT REVDAT 5 23-OCT-24 2X34 1 REMARK HETSYN SHEET LINK REVDAT 4 07-MAR-18 2X34 1 SOURCE REMARK REVDAT 3 13-JUL-11 2X34 1 VERSN REVDAT 2 21-APR-10 2X34 1 JRNL REVDAT 1 23-MAR-10 2X34 0 JRNL AUTH F.VINCENT,D.DALMOLIN,R.M.WEINER,Y.BOURNE,B.HENRISSAT JRNL TITL STRUCTURE OF A POLYISOPRENOID BINDING DOMAIN FROM JRNL TITL 2 SACCHAROPHAGUS DEGRADANS IMPLICATED IN PLANT CELL WALL JRNL TITL 3 BREAKDOWN JRNL REF FEBS LETT. V. 584 1577 2010 JRNL REFN ISSN 0014-5793 JRNL PMID 20227408 JRNL DOI 10.1016/J.FEBSLET.2010.03.015 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 26470 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1399 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1901 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.06 REMARK 3 BIN R VALUE (WORKING SET) : 0.2680 REMARK 3 BIN FREE R VALUE SET COUNT : 92 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2618 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 106 REMARK 3 SOLVENT ATOMS : 364 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 6.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.70000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.70000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.160 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.148 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.099 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.600 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2802 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1685 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3826 ; 1.479 ; 2.008 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4168 ; 1.007 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 361 ; 5.903 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 107 ;36.125 ;24.766 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 442 ;11.089 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;13.930 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 472 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3122 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 512 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1753 ; 0.695 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 714 ; 0.156 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2849 ; 1.263 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1049 ; 2.092 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 970 ; 3.204 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 21 A 42 REMARK 3 ORIGIN FOR THE GROUP (A): 22.1647 54.3325 13.0856 REMARK 3 T TENSOR REMARK 3 T11: 0.0450 T22: 0.0352 REMARK 3 T33: 0.0551 T12: 0.0023 REMARK 3 T13: -0.0233 T23: -0.0415 REMARK 3 L TENSOR REMARK 3 L11: 3.0051 L22: 1.0480 REMARK 3 L33: 0.8676 L12: -1.0876 REMARK 3 L13: 0.2724 L23: -0.8527 REMARK 3 S TENSOR REMARK 3 S11: 0.1058 S12: 0.1121 S13: -0.2431 REMARK 3 S21: -0.0055 S22: -0.0913 S23: 0.0919 REMARK 3 S31: 0.0132 S32: 0.0516 S33: -0.0145 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 43 A 135 REMARK 3 ORIGIN FOR THE GROUP (A): 18.5130 53.2855 11.4178 REMARK 3 T TENSOR REMARK 3 T11: 0.0247 T22: 0.0078 REMARK 3 T33: 0.0258 T12: 0.0061 REMARK 3 T13: -0.0037 T23: -0.0108 REMARK 3 L TENSOR REMARK 3 L11: 0.8007 L22: 0.4235 REMARK 3 L33: 0.5054 L12: -0.0073 REMARK 3 L13: -0.0911 L23: -0.0587 REMARK 3 S TENSOR REMARK 3 S11: -0.0470 S12: 0.0439 S13: -0.0901 REMARK 3 S21: -0.0141 S22: 0.0243 S23: -0.0087 REMARK 3 S31: -0.0282 S32: -0.0273 S33: 0.0227 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 136 A 174 REMARK 3 ORIGIN FOR THE GROUP (A): 27.8843 47.1681 8.4260 REMARK 3 T TENSOR REMARK 3 T11: 0.0112 T22: 0.0232 REMARK 3 T33: 0.0409 T12: 0.0044 REMARK 3 T13: -0.0025 T23: -0.0105 REMARK 3 L TENSOR REMARK 3 L11: 1.9902 L22: 0.9561 REMARK 3 L33: 1.4321 L12: -0.4138 REMARK 3 L13: -0.5556 L23: -0.1077 REMARK 3 S TENSOR REMARK 3 S11: -0.0771 S12: 0.0217 S13: -0.2013 REMARK 3 S21: -0.0318 S22: 0.0172 S23: 0.0245 REMARK 3 S31: 0.0812 S32: 0.1595 S33: 0.0598 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 26 REMARK 3 ORIGIN FOR THE GROUP (A): 27.2101 42.4710 27.0469 REMARK 3 T TENSOR REMARK 3 T11: 0.0281 T22: 0.0392 REMARK 3 T33: 0.0433 T12: -0.0039 REMARK 3 T13: 0.0047 T23: 0.0137 REMARK 3 L TENSOR REMARK 3 L11: 2.8771 L22: 3.4517 REMARK 3 L33: 1.8967 L12: 2.2093 REMARK 3 L13: 0.1532 L23: -0.3089 REMARK 3 S TENSOR REMARK 3 S11: -0.0546 S12: 0.2144 S13: -0.0493 REMARK 3 S21: -0.0785 S22: 0.0561 S23: -0.1514 REMARK 3 S31: -0.1827 S32: 0.1752 S33: -0.0015 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 27 B 44 REMARK 3 ORIGIN FOR THE GROUP (A): 20.9993 33.7209 34.3085 REMARK 3 T TENSOR REMARK 3 T11: 0.0593 T22: 0.0279 REMARK 3 T33: 0.0728 T12: 0.0109 REMARK 3 T13: 0.0153 T23: -0.0120 REMARK 3 L TENSOR REMARK 3 L11: 7.0636 L22: 1.7076 REMARK 3 L33: 0.8775 L12: 1.8912 REMARK 3 L13: -1.2308 L23: -1.1819 REMARK 3 S TENSOR REMARK 3 S11: -0.0607 S12: -0.0986 S13: -0.2699 REMARK 3 S21: 0.0229 S22: 0.0172 S23: -0.0112 REMARK 3 S31: 0.0738 S32: 0.0382 S33: 0.0435 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 45 B 135 REMARK 3 ORIGIN FOR THE GROUP (A): 22.1799 40.5296 33.1146 REMARK 3 T TENSOR REMARK 3 T11: 0.0294 T22: 0.0031 REMARK 3 T33: 0.0308 T12: -0.0033 REMARK 3 T13: 0.0063 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 2.0259 L22: 0.5496 REMARK 3 L33: 0.7948 L12: 0.1865 REMARK 3 L13: 0.4963 L23: 0.1276 REMARK 3 S TENSOR REMARK 3 S11: -0.0237 S12: -0.0543 S13: 0.0898 REMARK 3 S21: 0.0512 S22: 0.0293 S23: 0.0179 REMARK 3 S31: -0.0208 S32: -0.0058 S33: -0.0056 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 136 B 173 REMARK 3 ORIGIN FOR THE GROUP (A): 32.0017 47.8656 33.8561 REMARK 3 T TENSOR REMARK 3 T11: 0.0185 T22: 0.0135 REMARK 3 T33: 0.0465 T12: -0.0042 REMARK 3 T13: 0.0087 T23: -0.0143 REMARK 3 L TENSOR REMARK 3 L11: 3.2234 L22: 2.0406 REMARK 3 L33: 1.6887 L12: 1.6956 REMARK 3 L13: 1.6349 L23: 1.1217 REMARK 3 S TENSOR REMARK 3 S11: -0.1483 S12: 0.0273 S13: 0.1391 REMARK 3 S21: -0.0339 S22: 0.1043 S23: 0.0203 REMARK 3 S31: -0.1397 S32: 0.1199 S33: 0.0440 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2X34 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-JAN-10. REMARK 100 THE DEPOSITION ID IS D_1290042578. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27856 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 51.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.41000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 42% PEG600, 0.2M IMIDAZOL-MALATE PH REMARK 280 5.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.48950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.09550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.48200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.09550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.48950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.48200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -1 REMARK 465 HIS A 175 REMARK 465 HIS A 176 REMARK 465 HIS A 177 REMARK 465 HIS A 178 REMARK 465 HIS A 179 REMARK 465 MSE B -1 REMARK 465 HIS B 174 REMARK 465 HIS B 175 REMARK 465 HIS B 176 REMARK 465 HIS B 177 REMARK 465 HIS B 178 REMARK 465 HIS B 179 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 0 CB CG CD CE NZ REMARK 470 HIS A 174 CG ND1 CD2 CE1 NE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 SER B 4 CA CB OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CD2 LEU A 120 O HOH A 2134 1.84 REMARK 500 O HOH A 2144 O HOH A 2175 1.91 REMARK 500 N LYS B 0 O HOH B 2002 1.92 REMARK 500 O HOH A 2143 O HOH A 2144 2.02 REMARK 500 O HOH A 2009 O HOH A 2047 2.02 REMARK 500 O HOH B 2002 O HOH B 2003 2.10 REMARK 500 ND2 ASN B 151 O HOH B 2170 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 2032 O HOH B 2135 4566 1.95 REMARK 500 O HOH A 2063 O HOH B 2048 3655 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 19 -140.37 56.89 REMARK 500 LEU A 65 -68.57 -101.27 REMARK 500 LYS B 19 -131.14 58.20 REMARK 500 LEU B 65 -70.32 -94.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2019 DISTANCE = 7.26 ANGSTROMS REMARK 525 HOH A2046 DISTANCE = 5.86 ANGSTROMS REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UQ8 A 7575 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UQ8 B 7576 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2X32 RELATED DB: PDB REMARK 900 STRUCTURE OF A POLYISOPRENOID BINDING DOMAIN FROM SACCHAROPHAGUS REMARK 900 DEGRADANS IMPLICATED IN PLANT CELL WALL BREAKDOWN REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS DOMAIN IS PART OF A MODULAR PROTEIN. MK AT THE REMARK 999 BEGINNING AND 6XHIS AT THE END ARE FROM THE CLONING REMARK 999 PROCESS. DBREF 2X34 A -1 0 PDB 2X34 2X34 -1 0 DBREF 2X34 A 1 173 UNP Q21LI5 Q21LI5_SACD2 199 371 DBREF 2X34 A 174 179 PDB 2X34 2X34 174 179 DBREF 2X34 B -1 0 PDB 2X34 2X34 -1 0 DBREF 2X34 B 1 173 UNP Q21LI5 Q21LI5_SACD2 199 371 DBREF 2X34 B 174 179 PDB 2X34 2X34 174 179 SEQRES 1 A 181 MSE LYS LEU ALA TYR SER LEU ASP ALA THR ALA SER PHE SEQRES 2 A 181 LEU ASN PHE VAL SER SER LYS LYS THR HIS VAL LEU GLU SEQRES 3 A 181 THR HIS ARG PHE ASP VAL LEU SER GLY GLY ILE SER THR SEQRES 4 A 181 ALA GLY GLU ALA GLN LEU VAL ILE ASP LEU ASN SER VAL SEQRES 5 A 181 ASN THR GLY ILE ASP VAL ARG ASN GLY ARG MSE ARG ASP SEQRES 6 A 181 TYR LEU PHE GLU THR ALA THR TYR SER VAL ALA THR VAL SEQRES 7 A 181 THR VAL PRO VAL ASP LEU ALA ALA VAL ALA GLY LEU ALA SEQRES 8 A 181 VAL GLY GLU ASP MSE LEU VAL ASP VAL SER ALA THR LEU SEQRES 9 A 181 ASP LEU HIS GLY VAL PRO GLY VAL ILE ASP THR GLN LEU SEQRES 10 A 181 ASN VAL GLN ARG LEU SER ALA THR ARG ILE MSE VAL GLN SEQRES 11 A 181 ASN GLN SER PRO LEU LEU ILE LYS ALA ALA ASP TYR SER SEQRES 12 A 181 LEU GLU ALA GLY ILE GLU THR LEU ARG ASN LEU ALA SER SEQRES 13 A 181 LEU ASN VAL ILE SER THR THR VAL PRO VAL ASP PHE VAL SEQRES 14 A 181 LEU PHE TYR GLU ALA PRO HIS HIS HIS HIS HIS HIS SEQRES 1 B 181 MSE LYS LEU ALA TYR SER LEU ASP ALA THR ALA SER PHE SEQRES 2 B 181 LEU ASN PHE VAL SER SER LYS LYS THR HIS VAL LEU GLU SEQRES 3 B 181 THR HIS ARG PHE ASP VAL LEU SER GLY GLY ILE SER THR SEQRES 4 B 181 ALA GLY GLU ALA GLN LEU VAL ILE ASP LEU ASN SER VAL SEQRES 5 B 181 ASN THR GLY ILE ASP VAL ARG ASN GLY ARG MSE ARG ASP SEQRES 6 B 181 TYR LEU PHE GLU THR ALA THR TYR SER VAL ALA THR VAL SEQRES 7 B 181 THR VAL PRO VAL ASP LEU ALA ALA VAL ALA GLY LEU ALA SEQRES 8 B 181 VAL GLY GLU ASP MSE LEU VAL ASP VAL SER ALA THR LEU SEQRES 9 B 181 ASP LEU HIS GLY VAL PRO GLY VAL ILE ASP THR GLN LEU SEQRES 10 B 181 ASN VAL GLN ARG LEU SER ALA THR ARG ILE MSE VAL GLN SEQRES 11 B 181 ASN GLN SER PRO LEU LEU ILE LYS ALA ALA ASP TYR SER SEQRES 12 B 181 LEU GLU ALA GLY ILE GLU THR LEU ARG ASN LEU ALA SER SEQRES 13 B 181 LEU ASN VAL ILE SER THR THR VAL PRO VAL ASP PHE VAL SEQRES 14 B 181 LEU PHE TYR GLU ALA PRO HIS HIS HIS HIS HIS HIS MODRES 2X34 MSE A 61 MET SELENOMETHIONINE MODRES 2X34 MSE A 94 MET SELENOMETHIONINE MODRES 2X34 MSE A 126 MET SELENOMETHIONINE MODRES 2X34 MSE B 61 MET SELENOMETHIONINE MODRES 2X34 MSE B 94 MET SELENOMETHIONINE MODRES 2X34 MSE B 126 MET SELENOMETHIONINE HET MSE A 61 13 HET MSE A 94 13 HET MSE A 126 8 HET MSE B 61 13 HET MSE B 94 8 HET MSE B 126 8 HET UQ8 A7575 53 HET UQ8 B7576 53 HETNAM MSE SELENOMETHIONINE HETNAM UQ8 UBIQUINONE-8 HETSYN UQ8 2,3-DIMETHOXY-5-METHYL-6-[(6E,10E,14E,18E,22E,26E)-3,7, HETSYN 2 UQ8 11,15,19,23,27,31-OCTAMETHYLDOTRIACONTA-2,6,10,14,18, HETSYN 3 UQ8 22,26,30-OC TAEN-1-YL]CYCLOHEXA-2,5-DIENE-1,4-DIONE FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 3 UQ8 2(C49 H74 O4) FORMUL 5 HOH *364(H2 O) HELIX 1 1 ILE A 54 LEU A 65 1 12 HELIX 2 2 ASP A 81 GLY A 87 1 7 HELIX 3 3 ALA A 138 SER A 141 5 4 HELIX 4 4 LEU A 142 ALA A 153 1 12 HELIX 5 5 ALA B 7 SER B 10 5 4 HELIX 6 6 ILE B 54 LEU B 65 1 12 HELIX 7 7 ASP B 81 GLY B 87 1 7 HELIX 8 8 ALA B 138 SER B 141 5 4 HELIX 9 9 LEU B 142 ALA B 153 1 12 SHEET 1 AA12 VAL A 50 ASN A 51 0 SHEET 2 AA12 VAL A 22 PHE A 28 1 O ARG A 27 N ASN A 51 SHEET 3 AA12 PHE A 11 LYS A 18 -1 O LEU A 12 N PHE A 28 SHEET 4 AA12 THR A 161 GLU A 171 -1 O PRO A 163 N VAL A 15 SHEET 5 AA12 LEU A 1 LEU A 5 -1 O SER A 4 N GLU A 171 SHEET 6 AA12 LEU A 31 SER A 36 -1 O GLY A 33 N LEU A 5 SHEET 7 AA12 GLU A 40 ASP A 46 -1 O GLU A 40 N SER A 36 SHEET 8 AA12 VAL A 73 PRO A 79 -1 O ALA A 74 N ILE A 45 SHEET 9 AA12 ASP A 93 LEU A 104 -1 O THR A 101 N THR A 77 SHEET 10 AA12 VAL A 107 ARG A 119 -1 O VAL A 107 N LEU A 104 SHEET 11 AA12 ARG A 124 ASN A 129 -1 O MSE A 126 N GLN A 118 SHEET 12 AA12 THR A 161 GLU A 171 -1 O PHE A 166 N ASN A 129 SHEET 1 AB 2 VAL A 50 ASN A 51 0 SHEET 2 AB 2 THR A 161 GLU A 171 -1 O PRO A 163 N VAL A 15 SHEET 1 BA12 VAL B 50 ASN B 51 0 SHEET 2 BA12 LEU B 23 PHE B 28 -1 O ARG B 27 N ASN B 51 SHEET 3 BA12 PHE B 11 SER B 17 1 O LEU B 12 N PHE B 28 SHEET 4 BA12 THR B 161 GLU B 171 1 O PRO B 163 N VAL B 15 SHEET 5 BA12 LEU B 1 LEU B 5 -1 O SER B 4 N GLU B 171 SHEET 6 BA12 LEU B 31 SER B 36 -1 O GLY B 33 N LEU B 5 SHEET 7 BA12 GLU B 40 ASP B 46 -1 O GLU B 40 N SER B 36 SHEET 8 BA12 VAL B 73 PRO B 79 -1 O ALA B 74 N ILE B 45 SHEET 9 BA12 ASP B 93 LEU B 104 -1 O THR B 101 N THR B 77 SHEET 10 BA12 VAL B 107 SER B 121 -1 O VAL B 107 N LEU B 104 SHEET 11 BA12 ARG B 124 ASN B 129 -1 O ARG B 124 N LEU B 120 SHEET 12 BA12 THR B 161 GLU B 171 -1 O PHE B 166 N ASN B 129 SHEET 1 BB 2 VAL B 50 ASN B 51 0 SHEET 2 BB 2 THR B 161 GLU B 171 1 O PRO B 163 N VAL B 15 LINK C ARG A 60 N MSE A 61 1555 1555 1.33 LINK C MSE A 61 N ARG A 62 1555 1555 1.33 LINK C ASP A 93 N MSE A 94 1555 1555 1.32 LINK C MSE A 94 N LEU A 95 1555 1555 1.33 LINK C ILE A 125 N MSE A 126 1555 1555 1.33 LINK C MSE A 126 N VAL A 127 1555 1555 1.33 LINK C ARG B 60 N MSE B 61 1555 1555 1.33 LINK C MSE B 61 N ARG B 62 1555 1555 1.33 LINK C ASP B 93 N MSE B 94 1555 1555 1.32 LINK C MSE B 94 N LEU B 95 1555 1555 1.32 LINK C ILE B 125 N MSE B 126 1555 1555 1.32 LINK C MSE B 126 N VAL B 127 1555 1555 1.33 SITE 1 AC1 18 LYS A 18 PHE A 28 ALA A 41 ILE A 54 SITE 2 AC1 18 ARG A 57 ARG A 60 VAL A 76 VAL A 78 SITE 3 AC1 18 VAL A 80 ILE A 111 VAL A 117 ILE A 135 SITE 4 AC1 18 ALA A 153 ILE A 158 SER A 159 PHE A 166 SITE 5 AC1 18 LEU A 168 HOH A2013 SITE 1 AC2 16 LYS B 18 PHE B 28 ILE B 45 ILE B 54 SITE 2 AC2 16 ARG B 57 ARG B 60 LEU B 65 VAL B 76 SITE 3 AC2 16 VAL B 80 ALA B 153 ILE B 158 VAL B 162 SITE 4 AC2 16 VAL B 164 PHE B 166 LEU B 168 TYR B 170 CRYST1 62.979 64.964 84.191 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015878 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015393 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011878 0.00000 MTRIX1 1 0.961000 0.072000 0.268000 -5.37555 1 MTRIX2 1 0.077000 -0.997000 -0.011000 33.34503 1 MTRIX3 1 0.266000 0.031000 -0.963000 31.87410 1