HEADER LIGASE 25-JAN-10 2X3K TITLE CO-COMPLEX STRUCTURE OF ACHROMOBACTIN SYNTHETASE PROTEIN D (ACSD) WITH TITLE 2 AMP AND SULFATE FROM PECTOBACTERIUM CHRYSANTHEMI COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACSD; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ERWINIA CHRYSANTHEMI; SOURCE 3 ORGANISM_TAXID: 556; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET151/D-TOPO KEYWDS ALCALIGIN BIOSYNTHESIS, LIGASE, ALCC, ADENYLATION, SIDEROPHORES, IRON KEYWDS 2 ACQUISITION EXPDTA X-RAY DIFFRACTION AUTHOR S.SCHMELZ,J.H.NAISMITH REVDAT 2 20-DEC-23 2X3K 1 REMARK REVDAT 1 10-NOV-10 2X3K 0 JRNL AUTH S.SCHMELZ JRNL TITL ADENYLATE FORMING ENZYMES INVOLVED IN NRPS-INDEPENDENT JRNL TITL 2 SIDEROPHORE BIOSYNTHESIS JRNL REF PH D THESIS 2010 JRNL PUBL ST ANDREWS UK: INSTITUTE (THESIS) REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0070 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 46179 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2469 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3369 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.60 REMARK 3 BIN R VALUE (WORKING SET) : 0.2840 REMARK 3 BIN FREE R VALUE SET COUNT : 179 REMARK 3 BIN FREE R VALUE : 0.3790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9175 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 169 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.77000 REMARK 3 B22 (A**2) : 4.87000 REMARK 3 B33 (A**2) : -3.12000 REMARK 3 B12 (A**2) : -1.59000 REMARK 3 B13 (A**2) : -2.02000 REMARK 3 B23 (A**2) : 0.43000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.555 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.303 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.247 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.121 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.895 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 9493 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 12910 ; 1.563 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1142 ; 6.699 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 481 ;33.757 ;23.306 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1535 ;17.184 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 86 ;19.298 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1372 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7396 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5717 ; 0.755 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 9182 ; 1.443 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3776 ; 2.101 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3727 ; 3.479 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2X3K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-JAN-10. REMARK 100 THE DEPOSITION ID IS D_1290042629. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-SEP-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46179 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 39.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 2.600 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.30000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3FFE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CACODYLATE PH 6.5, 29 % REMARK 280 (W/V) PEG 8000 AND 200 MM (NH4)2SO4 AND 10 MM AMP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -63.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 ASN A 3 REMARK 465 ARG A 4 REMARK 465 ASN A 5 REMARK 465 HIS A 6 REMARK 465 GLN A 99 REMARK 465 GLU A 573 REMARK 465 ALA A 574 REMARK 465 ASP A 575 REMARK 465 ARG A 576 REMARK 465 GLN A 577 REMARK 465 GLY A 588 REMARK 465 HIS A 589 REMARK 465 ALA A 590 REMARK 465 VAL A 591 REMARK 465 GLN A 592 REMARK 465 HIS A 593 REMARK 465 GLY A 594 REMARK 465 SER A 595 REMARK 465 GLU A 596 REMARK 465 VAL A 597 REMARK 465 GLN A 598 REMARK 465 HIS A 599 REMARK 465 ASP A 600 REMARK 465 GLU A 601 REMARK 465 ARG A 602 REMARK 465 ARG A 603 REMARK 465 HIS A 604 REMARK 465 GLY A 605 REMARK 465 ASP A 606 REMARK 465 VAL A 607 REMARK 465 ARG A 608 REMARK 465 HIS A 609 REMARK 465 GLU A 610 REMARK 465 GLU A 611 REMARK 465 ALA A 612 REMARK 465 ARG A 613 REMARK 465 HIS A 614 REMARK 465 GLY A 615 REMARK 465 GLU A 616 REMARK 465 VAL A 617 REMARK 465 GLN A 618 REMARK 465 HIS A 619 REMARK 465 GLY A 620 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 ASN B 3 REMARK 465 ARG B 4 REMARK 465 ASN B 5 REMARK 465 HIS B 6 REMARK 465 ALA B 98 REMARK 465 GLN B 99 REMARK 465 ILE B 479 REMARK 465 ASP B 480 REMARK 465 ASP B 481 REMARK 465 ASP B 482 REMARK 465 GLU B 573 REMARK 465 ALA B 574 REMARK 465 ASP B 575 REMARK 465 ARG B 576 REMARK 465 GLN B 577 REMARK 465 GLY B 588 REMARK 465 HIS B 589 REMARK 465 ALA B 590 REMARK 465 VAL B 591 REMARK 465 GLN B 592 REMARK 465 HIS B 593 REMARK 465 GLY B 594 REMARK 465 SER B 595 REMARK 465 GLU B 596 REMARK 465 VAL B 597 REMARK 465 GLN B 598 REMARK 465 HIS B 599 REMARK 465 ASP B 600 REMARK 465 GLU B 601 REMARK 465 ARG B 602 REMARK 465 ARG B 603 REMARK 465 HIS B 604 REMARK 465 GLY B 605 REMARK 465 ASP B 606 REMARK 465 VAL B 607 REMARK 465 ARG B 608 REMARK 465 HIS B 609 REMARK 465 GLU B 610 REMARK 465 GLU B 611 REMARK 465 ALA B 612 REMARK 465 ARG B 613 REMARK 465 HIS B 614 REMARK 465 GLY B 615 REMARK 465 GLU B 616 REMARK 465 VAL B 617 REMARK 465 GLN B 618 REMARK 465 HIS B 619 REMARK 465 GLY B 620 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 163 O HOH A 2017 2.12 REMARK 500 O LEU B 68 OD1 ASP B 70 2.13 REMARK 500 O GLN B 546 O HOH B 2074 2.14 REMARK 500 O GLY A 467 NH1 ARG A 501 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 30 -71.76 -134.40 REMARK 500 GLU A 40 136.65 -170.61 REMARK 500 LYS A 60 69.64 -67.80 REMARK 500 PRO A 69 -21.70 -27.71 REMARK 500 GLN A 71 -9.79 79.91 REMARK 500 GLN A 97 -96.63 -93.74 REMARK 500 ASP A 106 171.77 -57.40 REMARK 500 ALA A 175 56.88 -148.24 REMARK 500 HIS A 184 -20.54 152.97 REMARK 500 MET A 241 136.66 -172.83 REMARK 500 ILE A 280 -50.26 71.96 REMARK 500 THR A 301 -132.74 62.86 REMARK 500 ASN A 371 85.64 -65.49 REMARK 500 PRO A 443 39.52 -74.55 REMARK 500 ASP A 464 100.51 91.27 REMARK 500 LEU A 474 -65.64 -135.40 REMARK 500 ASP A 481 -1.11 -52.67 REMARK 500 HIS A 510 -74.15 -103.07 REMARK 500 PRO B 69 102.67 -47.10 REMARK 500 ASP B 70 18.22 153.37 REMARK 500 LEU B 180 68.99 -103.18 REMARK 500 ALA B 183 89.73 -14.23 REMARK 500 HIS B 184 -107.31 60.09 REMARK 500 LEU B 185 5.65 44.23 REMARK 500 GLN B 187 -75.00 -116.46 REMARK 500 MET B 250 30.80 -75.82 REMARK 500 ILE B 280 -42.17 79.10 REMARK 500 ASN B 302 -8.52 85.74 REMARK 500 ASP B 464 88.57 101.08 REMARK 500 LEU B 474 -68.14 -129.84 REMARK 500 HIS B 510 -75.90 -110.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP A 1588 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP B 1588 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1589 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1589 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2W02 RELATED DB: PDB REMARK 900 CO-COMPLEX STRUCTURE OF ACHROMOBACTIN SYNTHETASE PROTEIN D (ACSD) REMARK 900 WITH ATP FROM PECTOBACTERIUM CHRYSANTHEMI REMARK 900 RELATED ID: 2W04 RELATED DB: PDB REMARK 900 CO-COMPLEX STRUCTURE OF ACHROMOBACTIN SYNTHETASE PROTEIN D (ACSD) REMARK 900 WITH CITRATE IN ATP BINDING SITE FROM PECTOBACTERIUM CHRYSANTHEMI REMARK 900 RELATED ID: 2W03 RELATED DB: PDB REMARK 900 CO-COMPLEX STRUCTURE OF ACHROMOBACTIN SYNTHETASE PROTEIN D (ACSD) REMARK 900 WITH ADENOSINE, SULFATE AND CITRATE FROM PECTOBACTERIUM CHRYSANTHEMI REMARK 900 RELATED ID: 2X3J RELATED DB: PDB REMARK 900 CO-COMPLEX STRUCTURE OF ACHROMOBACTIN SYNTHETASE PROTEIN D (ACSD) REMARK 900 WITH ATP AND N-CITRYL-ETHYLENEDIAMINE FROM PECTOBACTERIUM REMARK 900 CHRYSANTHEMI DBREF 2X3K A 1 620 UNP Q93AT8 Q93AT8_ERWCH 1 620 DBREF 2X3K B 1 620 UNP Q93AT8 Q93AT8_ERWCH 1 620 SEQRES 1 A 620 MET ASN ASN ARG ASN HIS ASP VAL LEU SER ARG MET ILE SEQRES 2 A 620 SER GLU LYS ALA ALA LEU HIS GLY LEU LEU ASN CYS LEU SEQRES 3 A 620 ILE LYS GLU PHE ALA ILE PRO GLU GLY TYR LEU ARG TYR SEQRES 4 A 620 GLU TRP PRO ASP GLU MET LYS GLY ILE PRO PRO GLY ALA SEQRES 5 A 620 TYR PHE ASP GLY ALA ASP TRP LYS GLY ILE PRO MET MET SEQRES 6 A 620 ILE GLY LEU PRO ASP GLN LEU GLN LEU PHE VAL MET VAL SEQRES 7 A 620 ASP ARG ARG ASP THR PHE GLY SER GLN HIS TYR LEU SER SEQRES 8 A 620 ASP VAL TYR LEU ARG GLN ALA GLN GLY ASP TRP GLN CYS SEQRES 9 A 620 PRO ASP PHE GLU PRO LEU VAL ALA ARG LEU LEU ALA ALA SEQRES 10 A 620 CYS GLU HIS ILE ALA GLY ARG LYS ASN PRO GLU LEU TYR SEQRES 11 A 620 GLU GLN ILE LEU GLN SER GLN ARG LEU VAL SER ALA ILE SEQRES 12 A 620 VAL SER HIS ASN GLY ARG GLN ARG ALA ASP ALA PRO LEU SEQRES 13 A 620 GLN HIS TYR LEU GLN SER GLU GLN GLY LEU TRP PHE GLY SEQRES 14 A 620 HIS PRO SER HIS PRO ALA PRO LYS ALA ARG LEU TRP PRO SEQRES 15 A 620 ALA HIS LEU GLY GLN GLU GLN TRP ALA PRO GLU PHE GLN SEQRES 16 A 620 ALA ARG ALA ALA LEU HIS GLN PHE GLU VAL PRO VAL ASP SEQRES 17 A 620 GLY LEU HIS ILE GLY ALA ASN GLY LEU THR PRO GLN GLN SEQRES 18 A 620 VAL LEU ASP GLY PHE ALA ASP GLN GLN PRO ALA SER PRO SEQRES 19 A 620 GLY HIS ALA ILE ILE CYS MET HIS PRO VAL GLN ALA GLN SEQRES 20 A 620 LEU PHE MET GLN ASP ALA ARG VAL GLN GLN LEU LEU ARG SEQRES 21 A 620 ASP ASN VAL ILE ARG ASP LEU GLY GLN SER GLY ARG VAL SEQRES 22 A 620 ALA SER PRO THR ALA SER ILE ARG THR TRP PHE ILE ASP SEQRES 23 A 620 ASP HIS ASP TYR PHE ILE LYS GLY SER LEU ASN VAL ARG SEQRES 24 A 620 ILE THR ASN CYS VAL ARG LYS ASN ALA TRP TYR GLU LEU SEQRES 25 A 620 GLU SER THR VAL LEU ILE ASP ARG LEU PHE ARG GLN LEU SEQRES 26 A 620 LEU ASP GLN HIS ALA ASP THR LEU GLY GLY LEU VAL ALA SEQRES 27 A 620 ALA ALA GLU PRO GLY VAL VAL SER TRP SER PRO ALA ALA SEQRES 28 A 620 ALA GLY GLU LEU ASP SER HIS TRP PHE ARG GLU GLN THR SEQRES 29 A 620 GLY GLY ILE LEU ARG GLU ASN PHE CYS ARG ARG THR GLY SEQRES 30 A 620 ALA GLU ARG SER ILE MET ALA GLY THR LEU PHE ALA ARG SEQRES 31 A 620 GLY VAL ASP LEU GLN PRO MET ILE GLN THR PHE LEU ARG SEQRES 32 A 620 THR HIS TYR GLY GLU ALA LEU ASP ASP ASN ALA LEU LEU SEQRES 33 A 620 TYR TRP PHE ASP ASP TYR GLN THR ARG LEU LEU ARG PRO SEQRES 34 A 620 VAL LEU SER LEU PHE PHE ASN HIS GLY VAL VAL MET GLU SEQRES 35 A 620 PRO HIS LEU GLN ASN SER VAL LEU VAL HIS GLN GLN GLY SEQRES 36 A 620 ARG PRO GLN GLN VAL LEU LEU ARG ASP PHE GLU GLY VAL SEQRES 37 A 620 LYS LEU THR ASP ASP LEU GLY ILE ARG TYR ILE ASP ASP SEQRES 38 A 620 ASP ILE HIS PRO ARG VAL ARG GLN SER LEU LEU TYR SER SEQRES 39 A 620 ARG GLU GLN GLY TRP ASN ARG ILE MET TYR CYS LEU PHE SEQRES 40 A 620 ILE ASN HIS LEU SER GLU THR ILE LEU ALA LEU SER GLN SEQRES 41 A 620 GLY ARG PRO GLN LEU ALA PRO LEU MET TRP ARG ARG VAL SEQRES 42 A 620 GLN GLN GLN LEU ARG ALA ILE GLN GLY GLU LEU LYS GLN SEQRES 43 A 620 PRO SER PRO GLU LEU ASP ALA LEU ILE ALA GLY HIS PRO SEQRES 44 A 620 VAL ALA CYS LYS THR ASN LEU LYS VAL ARG LEU ALA ALA SEQRES 45 A 620 GLU ALA ASP ARG GLN ALA SER TYR VAL ARG LEU PRO SER SEQRES 46 A 620 PRO TRP GLY HIS ALA VAL GLN HIS GLY SER GLU VAL GLN SEQRES 47 A 620 HIS ASP GLU ARG ARG HIS GLY ASP VAL ARG HIS GLU GLU SEQRES 48 A 620 ALA ARG HIS GLY GLU VAL GLN HIS GLY SEQRES 1 B 620 MET ASN ASN ARG ASN HIS ASP VAL LEU SER ARG MET ILE SEQRES 2 B 620 SER GLU LYS ALA ALA LEU HIS GLY LEU LEU ASN CYS LEU SEQRES 3 B 620 ILE LYS GLU PHE ALA ILE PRO GLU GLY TYR LEU ARG TYR SEQRES 4 B 620 GLU TRP PRO ASP GLU MET LYS GLY ILE PRO PRO GLY ALA SEQRES 5 B 620 TYR PHE ASP GLY ALA ASP TRP LYS GLY ILE PRO MET MET SEQRES 6 B 620 ILE GLY LEU PRO ASP GLN LEU GLN LEU PHE VAL MET VAL SEQRES 7 B 620 ASP ARG ARG ASP THR PHE GLY SER GLN HIS TYR LEU SER SEQRES 8 B 620 ASP VAL TYR LEU ARG GLN ALA GLN GLY ASP TRP GLN CYS SEQRES 9 B 620 PRO ASP PHE GLU PRO LEU VAL ALA ARG LEU LEU ALA ALA SEQRES 10 B 620 CYS GLU HIS ILE ALA GLY ARG LYS ASN PRO GLU LEU TYR SEQRES 11 B 620 GLU GLN ILE LEU GLN SER GLN ARG LEU VAL SER ALA ILE SEQRES 12 B 620 VAL SER HIS ASN GLY ARG GLN ARG ALA ASP ALA PRO LEU SEQRES 13 B 620 GLN HIS TYR LEU GLN SER GLU GLN GLY LEU TRP PHE GLY SEQRES 14 B 620 HIS PRO SER HIS PRO ALA PRO LYS ALA ARG LEU TRP PRO SEQRES 15 B 620 ALA HIS LEU GLY GLN GLU GLN TRP ALA PRO GLU PHE GLN SEQRES 16 B 620 ALA ARG ALA ALA LEU HIS GLN PHE GLU VAL PRO VAL ASP SEQRES 17 B 620 GLY LEU HIS ILE GLY ALA ASN GLY LEU THR PRO GLN GLN SEQRES 18 B 620 VAL LEU ASP GLY PHE ALA ASP GLN GLN PRO ALA SER PRO SEQRES 19 B 620 GLY HIS ALA ILE ILE CYS MET HIS PRO VAL GLN ALA GLN SEQRES 20 B 620 LEU PHE MET GLN ASP ALA ARG VAL GLN GLN LEU LEU ARG SEQRES 21 B 620 ASP ASN VAL ILE ARG ASP LEU GLY GLN SER GLY ARG VAL SEQRES 22 B 620 ALA SER PRO THR ALA SER ILE ARG THR TRP PHE ILE ASP SEQRES 23 B 620 ASP HIS ASP TYR PHE ILE LYS GLY SER LEU ASN VAL ARG SEQRES 24 B 620 ILE THR ASN CYS VAL ARG LYS ASN ALA TRP TYR GLU LEU SEQRES 25 B 620 GLU SER THR VAL LEU ILE ASP ARG LEU PHE ARG GLN LEU SEQRES 26 B 620 LEU ASP GLN HIS ALA ASP THR LEU GLY GLY LEU VAL ALA SEQRES 27 B 620 ALA ALA GLU PRO GLY VAL VAL SER TRP SER PRO ALA ALA SEQRES 28 B 620 ALA GLY GLU LEU ASP SER HIS TRP PHE ARG GLU GLN THR SEQRES 29 B 620 GLY GLY ILE LEU ARG GLU ASN PHE CYS ARG ARG THR GLY SEQRES 30 B 620 ALA GLU ARG SER ILE MET ALA GLY THR LEU PHE ALA ARG SEQRES 31 B 620 GLY VAL ASP LEU GLN PRO MET ILE GLN THR PHE LEU ARG SEQRES 32 B 620 THR HIS TYR GLY GLU ALA LEU ASP ASP ASN ALA LEU LEU SEQRES 33 B 620 TYR TRP PHE ASP ASP TYR GLN THR ARG LEU LEU ARG PRO SEQRES 34 B 620 VAL LEU SER LEU PHE PHE ASN HIS GLY VAL VAL MET GLU SEQRES 35 B 620 PRO HIS LEU GLN ASN SER VAL LEU VAL HIS GLN GLN GLY SEQRES 36 B 620 ARG PRO GLN GLN VAL LEU LEU ARG ASP PHE GLU GLY VAL SEQRES 37 B 620 LYS LEU THR ASP ASP LEU GLY ILE ARG TYR ILE ASP ASP SEQRES 38 B 620 ASP ILE HIS PRO ARG VAL ARG GLN SER LEU LEU TYR SER SEQRES 39 B 620 ARG GLU GLN GLY TRP ASN ARG ILE MET TYR CYS LEU PHE SEQRES 40 B 620 ILE ASN HIS LEU SER GLU THR ILE LEU ALA LEU SER GLN SEQRES 41 B 620 GLY ARG PRO GLN LEU ALA PRO LEU MET TRP ARG ARG VAL SEQRES 42 B 620 GLN GLN GLN LEU ARG ALA ILE GLN GLY GLU LEU LYS GLN SEQRES 43 B 620 PRO SER PRO GLU LEU ASP ALA LEU ILE ALA GLY HIS PRO SEQRES 44 B 620 VAL ALA CYS LYS THR ASN LEU LYS VAL ARG LEU ALA ALA SEQRES 45 B 620 GLU ALA ASP ARG GLN ALA SER TYR VAL ARG LEU PRO SER SEQRES 46 B 620 PRO TRP GLY HIS ALA VAL GLN HIS GLY SER GLU VAL GLN SEQRES 47 B 620 HIS ASP GLU ARG ARG HIS GLY ASP VAL ARG HIS GLU GLU SEQRES 48 B 620 ALA ARG HIS GLY GLU VAL GLN HIS GLY HET AMP A1588 23 HET SO4 A1589 5 HET AMP B1588 23 HET SO4 B1589 5 HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM SO4 SULFATE ION FORMUL 3 AMP 2(C10 H14 N5 O7 P) FORMUL 4 SO4 2(O4 S 2-) FORMUL 7 HOH *169(H2 O) HELIX 1 1 ASP A 7 PHE A 30 1 24 HELIX 2 2 PHE A 30 GLY A 35 1 6 HELIX 3 3 PRO A 49 TYR A 53 5 5 HELIX 4 4 ASP A 106 GLY A 123 1 18 HELIX 5 5 ASN A 126 GLY A 148 1 23 HELIX 6 6 ASP A 153 GLN A 157 5 5 HELIX 7 7 HIS A 158 GLY A 165 1 8 HELIX 8 8 GLN A 187 ALA A 191 5 5 HELIX 9 9 ALA A 191 GLN A 195 5 5 HELIX 10 10 THR A 218 ALA A 227 1 10 HELIX 11 11 HIS A 242 MET A 250 1 9 HELIX 12 12 ASP A 252 ASP A 261 1 10 HELIX 13 13 ALA A 308 HIS A 329 1 22 HELIX 14 14 ALA A 330 LEU A 333 5 4 HELIX 15 15 GLY A 353 GLY A 365 1 13 HELIX 16 16 PHE A 372 GLY A 377 1 6 HELIX 17 17 ALA A 384 PHE A 388 1 5 HELIX 18 18 MET A 397 TYR A 406 1 10 HELIX 19 19 ASP A 411 ASN A 436 1 26 HELIX 20 20 LEU A 474 ILE A 479 5 6 HELIX 21 21 HIS A 484 LEU A 491 1 8 HELIX 22 22 SER A 494 ILE A 508 1 15 HELIX 23 23 HIS A 510 SER A 519 1 10 HELIX 24 24 GLN A 524 GLY A 542 1 19 HELIX 25 25 SER A 548 ALA A 556 1 9 HELIX 26 26 LEU A 566 ALA A 571 1 6 HELIX 27 27 ASP B 7 PHE B 30 1 24 HELIX 28 28 PHE B 30 GLY B 35 1 6 HELIX 29 29 PRO B 49 PHE B 54 1 6 HELIX 30 30 ASP B 106 GLY B 123 1 18 HELIX 31 31 GLU B 128 GLY B 148 1 21 HELIX 32 32 ASP B 153 GLN B 157 5 5 HELIX 33 33 HIS B 158 GLN B 164 1 7 HELIX 34 34 ALA B 191 GLN B 195 5 5 HELIX 35 35 THR B 218 ALA B 227 1 10 HELIX 36 36 HIS B 242 MET B 250 1 9 HELIX 37 37 ASP B 252 ASP B 261 1 10 HELIX 38 38 ALA B 308 ALA B 330 1 23 HELIX 39 39 ASP B 331 LEU B 333 5 3 HELIX 40 40 GLY B 353 GLY B 365 1 13 HELIX 41 41 PHE B 372 GLY B 377 1 6 HELIX 42 42 ALA B 384 ALA B 389 1 6 HELIX 43 43 MET B 397 GLY B 407 1 11 HELIX 44 44 ASP B 411 HIS B 437 1 27 HELIX 45 45 HIS B 444 GLN B 446 5 3 HELIX 46 46 ASP B 464 VAL B 468 5 5 HELIX 47 47 LEU B 474 TYR B 478 5 5 HELIX 48 48 HIS B 484 LEU B 491 1 8 HELIX 49 49 SER B 494 ILE B 508 1 15 HELIX 50 50 HIS B 510 SER B 519 1 10 HELIX 51 51 GLN B 524 GLY B 542 1 19 HELIX 52 52 SER B 548 GLY B 557 1 10 HELIX 53 53 LEU B 566 ALA B 571 1 6 SHEET 1 AA 4 LEU A 37 ARG A 38 0 SHEET 2 AA 4 ILE A 62 LEU A 68 -1 O MET A 65 N ARG A 38 SHEET 3 AA 4 LEU A 72 VAL A 78 -1 O LEU A 72 N LEU A 68 SHEET 4 AA 4 TYR A 94 ARG A 96 -1 O TYR A 94 N PHE A 75 SHEET 1 AB 3 ARG A 179 LEU A 180 0 SHEET 2 AB 3 LEU A 296 ILE A 300 -1 O ARG A 299 N LEU A 180 SHEET 3 AB 3 CYS A 303 ARG A 305 -1 O CYS A 303 N ILE A 300 SHEET 1 AC 8 LEU A 210 ALA A 214 0 SHEET 2 AC 8 GLY A 343 TRP A 347 -1 O VAL A 344 N GLY A 213 SHEET 3 AC 8 GLY A 366 GLU A 370 -1 O GLY A 366 N VAL A 345 SHEET 4 AC 8 TYR A 290 GLY A 294 -1 O PHE A 291 N ARG A 369 SHEET 5 AC 8 THR A 282 PHE A 284 -1 O TRP A 283 N ILE A 292 SHEET 6 AC 8 ARG A 265 PRO A 276 -1 O SER A 275 N PHE A 284 SHEET 7 AC 8 ALA A 198 PRO A 206 -1 O ALA A 198 N ALA A 274 SHEET 8 AC 8 HIS A 236 MET A 241 -1 O ALA A 237 N VAL A 205 SHEET 1 AD 3 SER A 381 MET A 383 0 SHEET 2 AD 3 SER A 448 GLN A 453 -1 O LEU A 450 N ILE A 382 SHEET 3 AD 3 ARG A 456 LEU A 462 -1 O ARG A 456 N GLN A 453 SHEET 1 AE 3 VAL A 439 VAL A 440 0 SHEET 2 AE 3 LYS A 469 THR A 471 -1 O LYS A 469 N VAL A 440 SHEET 3 AE 3 LEU A 492 TYR A 493 1 N TYR A 493 O LEU A 470 SHEET 1 AF 2 VAL A 560 LYS A 563 0 SHEET 2 AF 2 TYR A 580 LEU A 583 -1 O VAL A 581 N CYS A 562 SHEET 1 BA 4 LEU B 37 ARG B 38 0 SHEET 2 BA 4 ILE B 62 LEU B 68 -1 O MET B 65 N ARG B 38 SHEET 3 BA 4 LEU B 72 VAL B 78 -1 O LEU B 72 N LEU B 68 SHEET 4 BA 4 TYR B 94 ARG B 96 -1 O TYR B 94 N PHE B 75 SHEET 1 BB 8 LEU B 210 ALA B 214 0 SHEET 2 BB 8 GLY B 343 TRP B 347 -1 O VAL B 344 N GLY B 213 SHEET 3 BB 8 GLY B 366 GLU B 370 -1 O GLY B 366 N VAL B 345 SHEET 4 BB 8 TYR B 290 GLY B 294 -1 O PHE B 291 N ARG B 369 SHEET 5 BB 8 THR B 282 PHE B 284 -1 O TRP B 283 N ILE B 292 SHEET 6 BB 8 ARG B 265 PRO B 276 -1 O SER B 275 N PHE B 284 SHEET 7 BB 8 ALA B 198 PRO B 206 -1 O ALA B 198 N ALA B 274 SHEET 8 BB 8 HIS B 236 MET B 241 -1 O ALA B 237 N VAL B 205 SHEET 1 BC 2 LEU B 296 ILE B 300 0 SHEET 2 BC 2 CYS B 303 ARG B 305 -1 O CYS B 303 N ILE B 300 SHEET 1 BD 3 SER B 381 MET B 383 0 SHEET 2 BD 3 SER B 448 GLN B 453 -1 O LEU B 450 N ILE B 382 SHEET 3 BD 3 ARG B 456 LEU B 462 -1 O ARG B 456 N GLN B 453 SHEET 1 BE 3 VAL B 439 VAL B 440 0 SHEET 2 BE 3 LYS B 469 THR B 471 -1 O LYS B 469 N VAL B 440 SHEET 3 BE 3 LEU B 492 TYR B 493 1 N TYR B 493 O LEU B 470 SHEET 1 BF 2 VAL B 560 LYS B 563 0 SHEET 2 BF 2 TYR B 580 LEU B 583 -1 O VAL B 581 N CYS B 562 SITE 1 AC1 10 LEU A 166 HIS A 170 THR A 301 ARG A 305 SITE 2 AC1 10 HIS A 444 LEU A 445 GLN A 446 ASP A 464 SITE 3 AC1 10 ASN A 509 HOH A2087 SITE 1 AC2 12 LEU B 166 HIS B 170 THR B 301 ARG B 305 SITE 2 AC2 12 HIS B 444 LEU B 445 GLN B 446 ASN B 509 SITE 3 AC2 12 HOH B2072 HOH B2080 HOH B2081 HOH B2082 SITE 1 AC3 6 SER A 279 THR A 282 LYS A 293 ARG A 369 SITE 2 AC3 6 GLN A 446 ASP A 464 SITE 1 AC4 6 SER B 279 THR B 282 LYS B 293 ARG B 369 SITE 2 AC4 6 GLN B 446 ASP B 464 CRYST1 57.700 70.000 96.000 95.00 101.90 94.70 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017331 0.001425 0.003826 0.00000 SCALE2 0.000000 0.014334 0.001538 0.00000 SCALE3 0.000000 0.000000 0.010707 0.00000