HEADER SUGAR BINDING PROTEIN/PEPTIDE 26-JAN-10 2X3T TITLE GLUTARALDEHYDE-CROSSLINKED WHEAT GERM AGGLUTININ ISOLECTIN 1 CRYSTAL TITLE 2 SOAKED WITH A SYNTHETIC GLYCOPEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: AGGLUTININ ISOLECTIN 1; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: WGA1, ISOLECTIN A, WHEAT GERM AGGLUTININ ISOLECTIN 1; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: GLYCOPEPTIDE; COMPND 7 CHAIN: E, M; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRITICUM AESTIVUM; SOURCE 3 ORGANISM_COMMON: WHEAT; SOURCE 4 ORGANISM_TAXID: 4565; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 8 ORGANISM_TAXID: 32630 KEYWDS SUGAR BINDING PROTEIN-PEPTIDE COMPLEX, CHITIN-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR D.SCHWEFEL,C.MAIERHOFER,V.WITTMANN,K.DIEDERICHS,W.WELTE REVDAT 9 20-NOV-24 2X3T 1 REMARK REVDAT 8 01-MAY-24 2X3T 1 SEQRES REVDAT 7 20-DEC-23 2X3T 1 LINK REVDAT 6 05-AUG-20 2X3T 1 COMPND HETNAM HETSYN ATOM REVDAT 5 29-JUL-20 2X3T 1 COMPND REMARK HETNAM HETSYN REVDAT 5 2 1 SITE ATOM REVDAT 4 11-MAR-20 2X3T 1 SEQRES LINK REVDAT 3 28-DEC-16 2X3T 1 SOURCE REVDAT 2 09-APR-14 2X3T 1 REMARK VERSN HETNAM REVDAT 1 30-JUN-10 2X3T 0 JRNL AUTH D.SCHWEFEL,C.MAIERHOFER,J.G.BECK,S.SEEBERGER,K.DIEDERICHS, JRNL AUTH 2 H.M.MOLLER,W.WELTE,V.WITTMANN JRNL TITL STRUCTURAL BASIS OF MULTIVALENT BINDING TO WHEAT GERM JRNL TITL 2 AGGLUTININ. JRNL REF J.AM.CHEM.SOC. V. 132 8704 2010 JRNL REFN ISSN 0002-7863 JRNL PMID 20527753 JRNL DOI 10.1021/JA101646K REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 19531 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.6554 - 5.2529 0.99 2688 139 0.2285 0.2618 REMARK 3 2 5.2529 - 4.1721 1.00 2651 143 0.1760 0.2451 REMARK 3 3 4.1721 - 3.6455 1.00 2664 144 0.1887 0.2304 REMARK 3 4 3.6455 - 3.3126 1.00 2627 153 0.2272 0.2952 REMARK 3 5 3.3126 - 3.0753 1.00 2649 146 0.2739 0.3402 REMARK 3 6 3.0753 - 2.8941 1.00 2634 141 0.2885 0.3752 REMARK 3 7 2.8941 - 2.7493 0.99 2618 134 0.3259 0.3941 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 48.65 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.460 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.350 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.32 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.77830 REMARK 3 B22 (A**2) : 17.13320 REMARK 3 B33 (A**2) : -16.35480 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.14600 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 4929 REMARK 3 ANGLE : 0.721 6528 REMARK 3 CHIRALITY : 0.038 599 REMARK 3 PLANARITY : 0.006 898 REMARK 3 DIHEDRAL : 22.365 1746 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 5.0362 22.9398 22.8769 REMARK 3 T TENSOR REMARK 3 T11: 0.2530 T22: 0.5414 REMARK 3 T33: 0.2409 T12: 0.0284 REMARK 3 T13: -0.0300 T23: -0.0523 REMARK 3 L TENSOR REMARK 3 L11: 0.0279 L22: 0.0620 REMARK 3 L33: 0.1178 L12: 0.1068 REMARK 3 L13: 0.1219 L23: 0.0743 REMARK 3 S TENSOR REMARK 3 S11: -0.0792 S12: -0.2260 S13: 0.0122 REMARK 3 S21: -0.0107 S22: 0.0272 S23: 0.1124 REMARK 3 S31: -0.0299 S32: -0.2107 S33: 0.0219 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2X3T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-JAN-10. REMARK 100 THE DEPOSITION ID IS D_1290041907. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19531 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.450 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.91 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.78 REMARK 200 R MERGE FOR SHELL (I) : 0.49000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.450 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 7WGA REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.04M KH2PO4, 20% GLYCEROL, 14%-17% REMARK 280 PEG 8000, PH 4.9 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 46.60500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 6580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, M REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 7770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 171 REMARK 465 PCA B 1 REMARK 465 ARG B 2 REMARK 465 GLY B 34 REMARK 465 GLY B 171 REMARK 465 PCA C 1 REMARK 465 GLY C 161 REMARK 465 ALA C 162 REMARK 465 GLY C 163 REMARK 465 GLY C 171 REMARK 465 LYS E 1 REMARK 465 DBB E 2 REMARK 465 DVA E 3 REMARK 465 DVA E 6 REMARK 465 DBB E 7 REMARK 465 GLU E 8 REMARK 465 BAL E 9 REMARK 465 LYS M 1 REMARK 465 DBB M 2 REMARK 465 DVA M 3 REMARK 465 DVA M 6 REMARK 465 DBB M 7 REMARK 465 GLU M 8 REMARK 465 BAL M 9 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 5 OE1 OE2 REMARK 470 LYS A 33 CG CD CE NZ REMARK 470 LYS A 44 CD CE NZ REMARK 470 LYS A 130 CG CD CE NZ REMARK 470 LYS A 134 CG CD CE NZ REMARK 470 GLU B 5 CD OE1 OE2 REMARK 470 GLN B 20 CD OE1 NE2 REMARK 470 LYS B 33 CG CD CE NZ REMARK 470 LYS B 88 CG CD CE NZ REMARK 470 LYS B 96 CD CE NZ REMARK 470 LYS B 134 CG CD CE NZ REMARK 470 PRO B 157 O REMARK 470 LYS C 33 CG CD CE NZ REMARK 470 LYS C 96 CG CD CE NZ REMARK 470 LYS C 130 CD CE NZ REMARK 470 LYS C 134 CG CD CE NZ REMARK 470 LYS C 149 CG CD CE NZ REMARK 470 ARG D 2 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 5 OE1 OE2 REMARK 470 GLN D 20 CG CD OE1 NE2 REMARK 470 LYS D 33 CD CE NZ REMARK 470 LYS D 44 CD CE NZ REMARK 470 GLN D 92 CG CD OE1 NE2 REMARK 470 LYS D 130 CG CD CE NZ REMARK 470 LYS D 134 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 15 15.99 59.13 REMARK 500 SER A 19 172.76 -58.77 REMARK 500 PRO A 82 68.37 -65.14 REMARK 500 ALA A 125 45.53 -86.16 REMARK 500 PRO A 131 175.78 -59.97 REMARK 500 ASP A 135 37.23 -82.96 REMARK 500 ALA A 136 40.48 -153.53 REMARK 500 ASN A 143 19.06 50.94 REMARK 500 ASP B 29 1.66 -62.53 REMARK 500 TYR B 30 -39.48 -131.80 REMARK 500 GLN B 36 -63.60 -91.53 REMARK 500 ALA B 39 59.26 -110.48 REMARK 500 SER B 48 35.39 -72.17 REMARK 500 TYR B 73 -46.21 -130.62 REMARK 500 ASN B 143 12.72 50.66 REMARK 500 ALA C 93 45.98 -142.27 REMARK 500 SER C 123 -161.86 -126.49 REMARK 500 ALA C 125 57.53 -90.67 REMARK 500 ASP C 129 76.52 52.30 REMARK 500 ASN C 143 18.47 57.75 REMARK 500 CYS C 169 -177.97 -67.72 REMARK 500 ARG D 2 -169.33 -106.49 REMARK 500 TYR D 30 -29.78 -153.55 REMARK 500 GLN D 36 -74.18 -79.84 REMARK 500 CYS D 46 -175.97 -171.19 REMARK 500 ALA D 50 50.95 -141.61 REMARK 500 GLN D 79 78.11 -103.51 REMARK 500 CYS D 83 152.01 -49.63 REMARK 500 ALA D 93 19.57 -149.26 REMARK 500 LYS D 96 127.34 -35.00 REMARK 500 THR D 128 96.50 -68.56 REMARK 500 ASN D 143 10.56 59.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 GYV, DBB (RESIDUES 1170-1173 CHAINS A, B, C, D): CANNOT BE REMARK 600 ASSIGNED SEPARATE CHAIN IDS FOR THE CYCLIC LIGAND. REMARK 600 IN ABSENCE OF BACKBONE DENSITY, IT IS NOT POSSIBLE TO IDENTIFY REMARK 600 THEIR SPECIFIC POSITIONS IN THE CYCLIC LIGAND SINCE THEY MIGHT REMARK 600 BE ANY OF THE THREE EQUIVALENT DBB-GYV ADDUCTS. REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 DBB A 1171 REMARK 610 DBB A 1173 REMARK 610 DBB B 1171 REMARK 610 DBB B 1173 REMARK 610 DBB C 1173 REMARK 610 DBB D 1171 REMARK 610 DBB D 1173 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1WGC RELATED DB: PDB REMARK 900 WHEAT GERM AGGLUTININ (ISOLECTIN 1) COMPLEX WITH N- REMARK 900 ACETYLNEURAMINYLLACTOSE REMARK 900 RELATED ID: 7WGA RELATED DB: PDB REMARK 900 WHEAT GERM AGGLUTININ (ISOLECTIN 1) REMARK 900 RELATED ID: 2UVO RELATED DB: PDB REMARK 900 HIGH RESOLUTION CRYSTAL STRUCTURE OF WHEAT GERM AGGLUTININ IN REMARK 900 COMPLEX WITH N-ACETYL-D -GLUCOSAMINE REMARK 900 RELATED ID: 2UWG RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF WHEAT GERM AGGLUTININ ISOLECTIN 1 IN COMPLEX REMARK 900 WITH GLYCOSYLURETHAN REMARK 900 RELATED ID: 2CWG RELATED DB: PDB REMARK 900 WHEAT GERM AGGLUTININ ISOLECTIN 1 COMPLEX WITH T5 SIALOGLYCOPEPTIDE REMARK 900 OF GLYCOPHORIN A REMARK 900 RELATED ID: 2X52 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF WHEAT GERM AGGLUTININ ISOLECTIN 3 IN COMPLEX REMARK 900 WITH A SYNTHETIC DIVALENT CARBOHYDRATE LIGAND DBREF 2X3T A 1 171 UNP P10968 AGI1_WHEAT 27 197 DBREF 2X3T B 1 171 UNP P10968 AGI1_WHEAT 27 197 DBREF 2X3T C 1 171 UNP P10968 AGI1_WHEAT 27 197 DBREF 2X3T D 1 171 UNP P10968 AGI1_WHEAT 27 197 DBREF 2X3T E 1 9 PDB 2X3T 2X3T 1 9 DBREF 2X3T M 1 9 PDB 2X3T 2X3T 1 9 SEQRES 1 A 171 PCA ARG CYS GLY GLU GLN GLY SER ASN MET GLU CYS PRO SEQRES 2 A 171 ASN ASN LEU CYS CYS SER GLN TYR GLY TYR CYS GLY MET SEQRES 3 A 171 GLY GLY ASP TYR CYS GLY LYS GLY CYS GLN ASN GLY ALA SEQRES 4 A 171 CYS TRP THR SER LYS ARG CYS GLY SER GLN ALA GLY GLY SEQRES 5 A 171 ALA THR CYS THR ASN ASN GLN CYS CYS SER GLN TYR GLY SEQRES 6 A 171 TYR CYS GLY PHE GLY ALA GLU TYR CYS GLY ALA GLY CYS SEQRES 7 A 171 GLN GLY GLY PRO CYS ARG ALA ASP ILE LYS CYS GLY SER SEQRES 8 A 171 GLN ALA GLY GLY LYS LEU CYS PRO ASN ASN LEU CYS CYS SEQRES 9 A 171 SER GLN TRP GLY PHE CYS GLY LEU GLY SER GLU PHE CYS SEQRES 10 A 171 GLY GLY GLY CYS GLN SER GLY ALA CYS SER THR ASP LYS SEQRES 11 A 171 PRO CYS GLY LYS ASP ALA GLY GLY ARG VAL CYS THR ASN SEQRES 12 A 171 ASN TYR CYS CYS SER LYS TRP GLY SER CYS GLY ILE GLY SEQRES 13 A 171 PRO GLY TYR CYS GLY ALA GLY CYS GLN SER GLY GLY CYS SEQRES 14 A 171 ASP GLY SEQRES 1 B 171 PCA ARG CYS GLY GLU GLN GLY SER ASN MET GLU CYS PRO SEQRES 2 B 171 ASN ASN LEU CYS CYS SER GLN TYR GLY TYR CYS GLY MET SEQRES 3 B 171 GLY GLY ASP TYR CYS GLY LYS GLY CYS GLN ASN GLY ALA SEQRES 4 B 171 CYS TRP THR SER LYS ARG CYS GLY SER GLN ALA GLY GLY SEQRES 5 B 171 ALA THR CYS THR ASN ASN GLN CYS CYS SER GLN TYR GLY SEQRES 6 B 171 TYR CYS GLY PHE GLY ALA GLU TYR CYS GLY ALA GLY CYS SEQRES 7 B 171 GLN GLY GLY PRO CYS ARG ALA ASP ILE LYS CYS GLY SER SEQRES 8 B 171 GLN ALA GLY GLY LYS LEU CYS PRO ASN ASN LEU CYS CYS SEQRES 9 B 171 SER GLN TRP GLY PHE CYS GLY LEU GLY SER GLU PHE CYS SEQRES 10 B 171 GLY GLY GLY CYS GLN SER GLY ALA CYS SER THR ASP LYS SEQRES 11 B 171 PRO CYS GLY LYS ASP ALA GLY GLY ARG VAL CYS THR ASN SEQRES 12 B 171 ASN TYR CYS CYS SER LYS TRP GLY SER CYS GLY ILE GLY SEQRES 13 B 171 PRO GLY TYR CYS GLY ALA GLY CYS GLN SER GLY GLY CYS SEQRES 14 B 171 ASP GLY SEQRES 1 C 171 PCA ARG CYS GLY GLU GLN GLY SER ASN MET GLU CYS PRO SEQRES 2 C 171 ASN ASN LEU CYS CYS SER GLN TYR GLY TYR CYS GLY MET SEQRES 3 C 171 GLY GLY ASP TYR CYS GLY LYS GLY CYS GLN ASN GLY ALA SEQRES 4 C 171 CYS TRP THR SER LYS ARG CYS GLY SER GLN ALA GLY GLY SEQRES 5 C 171 ALA THR CYS THR ASN ASN GLN CYS CYS SER GLN TYR GLY SEQRES 6 C 171 TYR CYS GLY PHE GLY ALA GLU TYR CYS GLY ALA GLY CYS SEQRES 7 C 171 GLN GLY GLY PRO CYS ARG ALA ASP ILE LYS CYS GLY SER SEQRES 8 C 171 GLN ALA GLY GLY LYS LEU CYS PRO ASN ASN LEU CYS CYS SEQRES 9 C 171 SER GLN TRP GLY PHE CYS GLY LEU GLY SER GLU PHE CYS SEQRES 10 C 171 GLY GLY GLY CYS GLN SER GLY ALA CYS SER THR ASP LYS SEQRES 11 C 171 PRO CYS GLY LYS ASP ALA GLY GLY ARG VAL CYS THR ASN SEQRES 12 C 171 ASN TYR CYS CYS SER LYS TRP GLY SER CYS GLY ILE GLY SEQRES 13 C 171 PRO GLY TYR CYS GLY ALA GLY CYS GLN SER GLY GLY CYS SEQRES 14 C 171 ASP GLY SEQRES 1 D 171 PCA ARG CYS GLY GLU GLN GLY SER ASN MET GLU CYS PRO SEQRES 2 D 171 ASN ASN LEU CYS CYS SER GLN TYR GLY TYR CYS GLY MET SEQRES 3 D 171 GLY GLY ASP TYR CYS GLY LYS GLY CYS GLN ASN GLY ALA SEQRES 4 D 171 CYS TRP THR SER LYS ARG CYS GLY SER GLN ALA GLY GLY SEQRES 5 D 171 ALA THR CYS THR ASN ASN GLN CYS CYS SER GLN TYR GLY SEQRES 6 D 171 TYR CYS GLY PHE GLY ALA GLU TYR CYS GLY ALA GLY CYS SEQRES 7 D 171 GLN GLY GLY PRO CYS ARG ALA ASP ILE LYS CYS GLY SER SEQRES 8 D 171 GLN ALA GLY GLY LYS LEU CYS PRO ASN ASN LEU CYS CYS SEQRES 9 D 171 SER GLN TRP GLY PHE CYS GLY LEU GLY SER GLU PHE CYS SEQRES 10 D 171 GLY GLY GLY CYS GLN SER GLY ALA CYS SER THR ASP LYS SEQRES 11 D 171 PRO CYS GLY LYS ASP ALA GLY GLY ARG VAL CYS THR ASN SEQRES 12 D 171 ASN TYR CYS CYS SER LYS TRP GLY SER CYS GLY ILE GLY SEQRES 13 D 171 PRO GLY TYR CYS GLY ALA GLY CYS GLN SER GLY GLY CYS SEQRES 14 D 171 ASP GLY SEQRES 1 E 9 LYS DBB DVA DBB DBB DVA DBB GLU BAL SEQRES 1 M 9 LYS DBB DVA DBB DBB DVA DBB GLU BAL MODRES 2X3T PCA A 1 GLU PYROGLUTAMIC ACID MODRES 2X3T PCA D 1 GLU PYROGLUTAMIC ACID HET PCA A 1 8 HET PCA D 1 8 HET DBB E 4 6 HET DBB E 5 6 HET DBB M 4 6 HET DBB M 5 6 HET GYV A1170 18 HET DBB A1171 3 HET GYV A1172 18 HET DBB A1173 3 HET GOL A1174 6 HET GYV B1170 18 HET DBB B1171 3 HET GYV B1172 18 HET DBB B1173 3 HET GOL B1174 6 HET GYV C1172 18 HET DBB C1173 3 HET GYV D1170 18 HET DBB D1171 3 HET GYV D1172 18 HET DBB D1173 3 HET GOL D1176 6 HET GYV E1004 18 HET GYV E1005 18 HET GYV M1004 18 HET GYV M1005 18 HETNAM PCA PYROGLUTAMIC ACID HETNAM DBB D-ALPHA-AMINOBUTYRIC ACID HETNAM GYV 2-ACETAMIDO-1-O-CARBAMOYL-2-DEOXY-ALPHA-D-GLUCOPYRANOSE HETNAM GOL GLYCEROL HETSYN GYV 2-(ACETYLAMINO)-1-O-CARBAMOYL-2-DEOXY-ALPHA-D- HETSYN 2 GYV GLUCOPYRANOSE; 2-ACETAMIDO-1-O-CARBAMOYL-2-DEOXY- HETSYN 3 GYV ALPHA-D-GLUCOSE; 2-ACETAMIDO-1-O-CARBAMOYL-2-DEOXY-D- HETSYN 4 GYV GLUCOSE; 2-ACETAMIDO-1-O-CARBAMOYL-2-DEOXY-GLUCOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 PCA 2(C5 H7 N O3) FORMUL 5 DBB 11(C4 H9 N O2) FORMUL 7 GYV 11(C9 H16 N2 O7) FORMUL 11 GOL 3(C3 H8 O3) FORMUL 28 HOH *38(H2 O) HELIX 1 1 CYS A 3 SER A 8 5 6 HELIX 2 2 CYS A 12 LEU A 16 5 5 HELIX 3 3 GLY A 27 GLY A 32 1 6 HELIX 4 4 CYS A 46 GLY A 51 5 6 HELIX 5 5 GLY A 70 GLY A 75 1 6 HELIX 6 6 CYS A 89 GLY A 94 5 6 HELIX 7 7 CYS A 98 LEU A 102 5 5 HELIX 8 8 GLY A 113 GLY A 118 1 6 HELIX 9 9 GLY A 133 GLY A 137 5 5 HELIX 10 10 GLY A 156 GLY A 161 1 6 HELIX 11 11 CYS B 3 SER B 8 5 6 HELIX 12 12 CYS B 12 LEU B 16 5 5 HELIX 13 13 CYS B 46 ALA B 50 5 5 HELIX 14 14 GLY B 70 GLY B 75 1 6 HELIX 15 15 CYS B 89 GLY B 94 5 6 HELIX 16 16 CYS B 98 LEU B 102 5 5 HELIX 17 17 GLY B 113 GLY B 118 1 6 HELIX 18 18 GLY B 133 GLY B 137 5 5 HELIX 19 19 CYS C 3 SER C 8 5 6 HELIX 20 20 CYS C 12 LEU C 16 5 5 HELIX 21 21 GLY C 27 GLY C 32 1 6 HELIX 22 22 CYS C 46 GLY C 51 5 6 HELIX 23 23 GLY C 70 GLY C 75 1 6 HELIX 24 24 CYS C 89 GLY C 94 5 6 HELIX 25 25 CYS C 98 LEU C 102 5 5 HELIX 26 26 GLY C 113 GLY C 118 1 6 HELIX 27 27 GLY C 133 GLY C 137 5 5 HELIX 28 28 CYS D 3 SER D 8 5 6 HELIX 29 29 CYS D 12 LEU D 16 5 5 HELIX 30 30 GLY D 27 GLY D 32 1 6 HELIX 31 31 CYS D 46 GLY D 51 5 6 HELIX 32 32 CYS D 55 GLN D 59 5 5 HELIX 33 33 GLY D 70 GLY D 75 1 6 HELIX 34 34 CYS D 89 GLY D 94 5 6 HELIX 35 35 CYS D 98 LEU D 102 5 5 HELIX 36 36 GLY D 113 GLY D 118 1 6 HELIX 37 37 GLY D 133 GLY D 137 5 5 HELIX 38 38 CYS D 141 TYR D 145 5 5 HELIX 39 39 GLY D 156 GLY D 161 1 6 SHEET 1 AA 2 CYS A 17 CYS A 18 0 SHEET 2 AA 2 CYS A 24 GLY A 25 -1 O GLY A 25 N CYS A 17 SHEET 1 AB 2 CYS A 60 CYS A 61 0 SHEET 2 AB 2 CYS A 67 GLY A 68 -1 O GLY A 68 N CYS A 60 SHEET 1 AC 2 CYS A 103 CYS A 104 0 SHEET 2 AC 2 CYS A 110 GLY A 111 -1 O GLY A 111 N CYS A 103 SHEET 1 AD 2 CYS A 146 CYS A 147 0 SHEET 2 AD 2 CYS A 153 GLY A 154 -1 O GLY A 154 N CYS A 146 SHEET 1 BA 2 CYS B 17 CYS B 18 0 SHEET 2 BA 2 CYS B 24 GLY B 25 -1 O GLY B 25 N CYS B 17 SHEET 1 BB 2 CYS B 60 CYS B 61 0 SHEET 2 BB 2 CYS B 67 GLY B 68 -1 O GLY B 68 N CYS B 60 SHEET 1 BC 2 CYS B 103 CYS B 104 0 SHEET 2 BC 2 CYS B 110 GLY B 111 -1 O GLY B 111 N CYS B 103 SHEET 1 BD 2 CYS B 146 CYS B 147 0 SHEET 2 BD 2 CYS B 153 GLY B 154 -1 O GLY B 154 N CYS B 146 SHEET 1 CA 2 CYS C 17 CYS C 18 0 SHEET 2 CA 2 CYS C 24 GLY C 25 -1 O GLY C 25 N CYS C 17 SHEET 1 CB 2 CYS C 60 CYS C 61 0 SHEET 2 CB 2 CYS C 67 GLY C 68 -1 O GLY C 68 N CYS C 60 SHEET 1 CC 2 CYS C 103 CYS C 104 0 SHEET 2 CC 2 CYS C 110 GLY C 111 -1 O GLY C 111 N CYS C 103 SHEET 1 CD 2 CYS C 146 CYS C 147 0 SHEET 2 CD 2 CYS C 153 GLY C 154 -1 O GLY C 154 N CYS C 146 SHEET 1 DA 2 CYS D 17 CYS D 18 0 SHEET 2 DA 2 CYS D 24 GLY D 25 -1 O GLY D 25 N CYS D 17 SHEET 1 DB 2 CYS D 60 CYS D 61 0 SHEET 2 DB 2 CYS D 67 GLY D 68 -1 O GLY D 68 N CYS D 60 SHEET 1 DC 2 CYS D 103 CYS D 104 0 SHEET 2 DC 2 CYS D 110 GLY D 111 -1 O GLY D 111 N CYS D 103 SHEET 1 DD 2 CYS D 146 CYS D 147 0 SHEET 2 DD 2 CYS D 153 GLY D 154 -1 O GLY D 154 N CYS D 146 SSBOND 1 CYS A 3 CYS A 18 1555 1555 2.03 SSBOND 2 CYS A 12 CYS A 24 1555 1555 2.03 SSBOND 3 CYS A 17 CYS A 31 1555 1555 2.03 SSBOND 4 CYS A 35 CYS A 40 1555 1555 2.03 SSBOND 5 CYS A 46 CYS A 61 1555 1555 2.03 SSBOND 6 CYS A 55 CYS A 67 1555 1555 2.03 SSBOND 7 CYS A 60 CYS A 74 1555 1555 2.03 SSBOND 8 CYS A 78 CYS A 83 1555 1555 2.03 SSBOND 9 CYS A 89 CYS A 104 1555 1555 2.03 SSBOND 10 CYS A 98 CYS A 110 1555 1555 2.03 SSBOND 11 CYS A 103 CYS A 117 1555 1555 2.03 SSBOND 12 CYS A 121 CYS A 126 1555 1555 2.03 SSBOND 13 CYS A 132 CYS A 147 1555 1555 2.03 SSBOND 14 CYS A 141 CYS A 153 1555 1555 2.03 SSBOND 15 CYS A 146 CYS A 160 1555 1555 2.03 SSBOND 16 CYS A 164 CYS A 169 1555 1555 2.03 SSBOND 17 CYS B 3 CYS B 18 1555 1555 2.03 SSBOND 18 CYS B 12 CYS B 24 1555 1555 2.03 SSBOND 19 CYS B 17 CYS B 31 1555 1555 2.03 SSBOND 20 CYS B 35 CYS B 40 1555 1555 2.03 SSBOND 21 CYS B 46 CYS B 61 1555 1555 2.03 SSBOND 22 CYS B 55 CYS B 67 1555 1555 2.03 SSBOND 23 CYS B 60 CYS B 74 1555 1555 2.03 SSBOND 24 CYS B 78 CYS B 83 1555 1555 2.03 SSBOND 25 CYS B 89 CYS B 104 1555 1555 2.03 SSBOND 26 CYS B 98 CYS B 110 1555 1555 2.03 SSBOND 27 CYS B 103 CYS B 117 1555 1555 2.03 SSBOND 28 CYS B 121 CYS B 126 1555 1555 2.03 SSBOND 29 CYS B 132 CYS B 147 1555 1555 2.03 SSBOND 30 CYS B 141 CYS B 153 1555 1555 2.03 SSBOND 31 CYS B 146 CYS B 160 1555 1555 2.03 SSBOND 32 CYS B 164 CYS B 169 1555 1555 2.03 SSBOND 33 CYS C 3 CYS C 18 1555 1555 2.03 SSBOND 34 CYS C 12 CYS C 24 1555 1555 2.03 SSBOND 35 CYS C 17 CYS C 31 1555 1555 2.03 SSBOND 36 CYS C 35 CYS C 40 1555 1555 2.03 SSBOND 37 CYS C 46 CYS C 61 1555 1555 2.03 SSBOND 38 CYS C 55 CYS C 67 1555 1555 2.03 SSBOND 39 CYS C 60 CYS C 74 1555 1555 2.03 SSBOND 40 CYS C 78 CYS C 83 1555 1555 2.03 SSBOND 41 CYS C 89 CYS C 104 1555 1555 2.03 SSBOND 42 CYS C 98 CYS C 110 1555 1555 2.03 SSBOND 43 CYS C 103 CYS C 117 1555 1555 2.03 SSBOND 44 CYS C 121 CYS C 126 1555 1555 2.03 SSBOND 45 CYS C 132 CYS C 147 1555 1555 2.03 SSBOND 46 CYS C 141 CYS C 153 1555 1555 2.03 SSBOND 47 CYS C 146 CYS C 160 1555 1555 2.03 SSBOND 48 CYS C 164 CYS C 169 1555 1555 2.03 SSBOND 49 CYS D 3 CYS D 18 1555 1555 2.03 SSBOND 50 CYS D 12 CYS D 24 1555 1555 2.03 SSBOND 51 CYS D 17 CYS D 31 1555 1555 2.03 SSBOND 52 CYS D 35 CYS D 40 1555 1555 2.03 SSBOND 53 CYS D 46 CYS D 61 1555 1555 2.03 SSBOND 54 CYS D 55 CYS D 67 1555 1555 2.03 SSBOND 55 CYS D 60 CYS D 74 1555 1555 2.03 SSBOND 56 CYS D 78 CYS D 83 1555 1555 2.03 SSBOND 57 CYS D 89 CYS D 104 1555 1555 2.03 SSBOND 58 CYS D 98 CYS D 110 1555 1555 2.03 SSBOND 59 CYS D 103 CYS D 117 1555 1555 2.03 SSBOND 60 CYS D 121 CYS D 126 1555 1555 2.03 SSBOND 61 CYS D 132 CYS D 147 1555 1555 2.03 SSBOND 62 CYS D 141 CYS D 153 1555 1555 2.03 SSBOND 63 CYS D 146 CYS D 160 1555 1555 2.03 SSBOND 64 CYS D 164 CYS D 169 1555 1555 2.03 LINK C PCA A 1 N ARG A 2 1555 1555 1.33 LINK ND3 GYV A1170 C DBB A1171 1555 1555 1.45 LINK ND3 GYV A1172 C DBB A1173 1555 1555 1.45 LINK ND3 GYV B1170 C DBB B1171 1555 1555 1.46 LINK ND3 GYV B1172 C DBB B1173 1555 1555 1.46 LINK ND3 GYV C1172 C DBB C1173 1555 1555 1.46 LINK C PCA D 1 N ARG D 2 1555 1555 1.33 LINK ND3 GYV D1170 C DBB D1171 1555 1555 1.46 LINK ND3 GYV D1172 C DBB D1173 1555 1555 1.46 LINK C DBB E 4 N DBB E 5 1555 1555 1.33 LINK CG DBB E 4 ND3 GYV E1004 1555 1555 1.45 LINK CG DBB E 5 ND3 GYV E1005 1555 1555 1.45 LINK C DBB M 4 N DBB M 5 1555 1555 1.33 LINK CG DBB M 4 ND3 GYV M1004 1555 1555 1.45 LINK CG DBB M 5 ND3 GYV M1005 1555 1555 1.46 CRYST1 44.640 93.210 92.500 90.00 98.32 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022401 0.000000 0.003276 0.00000 SCALE2 0.000000 0.010728 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010926 0.00000 HETATM 1 N PCA A 1 -9.967 3.713 11.525 1.00 95.26 N ANISOU 1 N PCA A 1 10888 14045 11260 -581 -143 288 N HETATM 2 CA PCA A 1 -8.951 2.926 12.218 1.00 94.73 C ANISOU 2 CA PCA A 1 10839 13981 11172 -601 -121 319 C HETATM 3 CB PCA A 1 -9.005 3.175 13.722 1.00 94.33 C ANISOU 3 CB PCA A 1 10744 14019 11078 -570 -100 300 C HETATM 4 CG PCA A 1 -10.290 3.936 13.992 1.00 94.92 C ANISOU 4 CG PCA A 1 10762 14159 11144 -536 -106 264 C HETATM 5 CD PCA A 1 -10.826 4.190 12.609 1.00 95.40 C ANISOU 5 CD PCA A 1 10842 14160 11247 -546 -133 260 C HETATM 6 OE PCA A 1 -11.901 4.760 12.429 1.00 95.71 O ANISOU 6 OE PCA A 1 10845 14229 11291 -525 -145 234 O HETATM 7 C PCA A 1 -9.099 1.439 11.933 1.00 94.75 C ANISOU 7 C PCA A 1 10849 13978 11172 -661 -104 385 C HETATM 8 O PCA A 1 -8.396 0.614 12.515 1.00 94.65 O ANISOU 8 O PCA A 1 10848 13973 11140 -684 -85 418 O