HEADER HYDROLASE 28-JAN-10 2X40 TITLE STRUCTURE OF BETA-GLUCOSIDASE 3B FROM THERMOTOGA NEAPOLITANA IN TITLE 2 COMPLEX WITH GLYCEROL COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-GLUCOSIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BETA-GLUCOSIDASE 3B; COMPND 5 EC: 3.2.1.21; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA NEAPOLITANA; SOURCE 3 ORGANISM_TAXID: 309803; SOURCE 4 STRAIN: DSM 4359; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: TUNER(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET-22B; SOURCE 9 OTHER_DETAILS: GERMAN COLLECTION OF MICROORGANISMS (DSM) KEYWDS HYDROLASE, TIM BARREL FOLD, FIBRONECTIN TYPE III FOLD EXPDTA X-RAY DIFFRACTION AUTHOR T.POZZO,E.N.KARLSSON,D.T.LOGAN REVDAT 4 08-MAY-24 2X40 1 REMARK REVDAT 3 23-MAR-10 2X40 1 JRNL REVDAT 2 16-FEB-10 2X40 1 JRNL REMARK REVDAT 1 09-FEB-10 2X40 0 JRNL AUTH T.POZZO,J.LINARES PASTEN,E.N.KARLSSON,D.T.LOGAN JRNL TITL STRUCTURAL AND FUNCTIONAL ANALYSIS OF BETA-GLUCOSIDASE 3B JRNL TITL 2 FROM THERMOTOGA NEAPOLITANA: A THERMOSTABLE 3-DOMAIN JRNL TITL 3 REPRESENTATIVE OF GLYCOSIDE HYDROLASE FAMILY 3 JRNL REF J.MOL.BIOL. V. 397 724 2010 JRNL REFN ISSN 0022-2836 JRNL PMID 20138890 JRNL DOI 10.1016/J.JMB.2010.01.072 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.TURNER,A.PRAMHED,E.KANDERS,M.HEDSTROM,E.N.KARLSSON, REMARK 1 AUTH 2 D.T.LOGAN REMARK 1 TITL EXPRESSION, PURIFICATION, CRYSTALLIZATION AND PRELIMINARY REMARK 1 TITL 2 X-RAY DIFFRACTION ANALYSIS OF THERMOTOGA NEAPOLITANA REMARK 1 TITL 3 BETA-GLUCOSIDASE B. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 63 802 2007 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 17768360 REMARK 1 DOI 10.1107/S1744309107040341 REMARK 2 REMARK 2 RESOLUTION. 2.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.45 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 36846 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1858 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.4571 - 5.4318 0.99 2843 130 0.1650 0.1863 REMARK 3 2 5.4318 - 4.3140 1.00 2749 138 0.1301 0.1921 REMARK 3 3 4.3140 - 3.7695 1.00 2718 149 0.1284 0.1920 REMARK 3 4 3.7695 - 3.4252 1.00 2699 154 0.1488 0.2101 REMARK 3 5 3.4252 - 3.1799 1.00 2678 150 0.1591 0.2327 REMARK 3 6 3.1799 - 2.9925 1.00 2700 142 0.1812 0.2606 REMARK 3 7 2.9925 - 2.8427 1.00 2658 152 0.1859 0.2580 REMARK 3 8 2.8427 - 2.7190 1.00 2661 165 0.2002 0.2895 REMARK 3 9 2.7190 - 2.6144 1.00 2707 119 0.2106 0.3139 REMARK 3 10 2.6144 - 2.5242 1.00 2671 145 0.2218 0.2776 REMARK 3 11 2.5242 - 2.4453 1.00 2662 147 0.2527 0.3142 REMARK 3 12 2.4453 - 2.3754 1.00 2637 143 0.3050 0.3831 REMARK 3 13 2.3754 - 2.3129 0.97 2605 124 0.3680 0.3982 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 50.02 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 43.22 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.57030 REMARK 3 B22 (A**2) : 12.38590 REMARK 3 B33 (A**2) : -6.81560 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 5784 REMARK 3 ANGLE : 0.862 7820 REMARK 3 CHIRALITY : 0.062 843 REMARK 3 PLANARITY : 0.003 1024 REMARK 3 DIHEDRAL : 16.240 2159 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:320) REMARK 3 ORIGIN FOR THE GROUP (A): -6.2367 24.9929 -21.9898 REMARK 3 T TENSOR REMARK 3 T11: 0.4430 T22: 0.3291 REMARK 3 T33: 0.2251 T12: -0.1576 REMARK 3 T13: -0.0279 T23: 0.0242 REMARK 3 L TENSOR REMARK 3 L11: 0.6936 L22: 0.9597 REMARK 3 L33: 0.6287 L12: 0.4687 REMARK 3 L13: -0.3202 L23: -0.1858 REMARK 3 S TENSOR REMARK 3 S11: 0.0074 S12: -0.0090 S13: 0.0505 REMARK 3 S21: -0.1554 S22: -0.0061 S23: -0.0438 REMARK 3 S31: -0.4016 S32: 0.3061 S33: -0.0022 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 321:536) REMARK 3 ORIGIN FOR THE GROUP (A): -39.5189 12.6983 -25.3878 REMARK 3 T TENSOR REMARK 3 T11: 0.2669 T22: 0.3662 REMARK 3 T33: 0.3005 T12: -0.0066 REMARK 3 T13: -0.1529 T23: 0.0510 REMARK 3 L TENSOR REMARK 3 L11: 0.6706 L22: 1.2929 REMARK 3 L33: 2.1202 L12: -0.4893 REMARK 3 L13: 0.8578 L23: 0.2336 REMARK 3 S TENSOR REMARK 3 S11: -0.1181 S12: -0.0602 S13: -0.0154 REMARK 3 S21: -0.2440 S22: 0.0760 S23: 0.3737 REMARK 3 S31: -0.2107 S32: -0.4784 S33: 0.0238 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 537:599) REMARK 3 ORIGIN FOR THE GROUP (A): -22.0062 5.8584 -8.6193 REMARK 3 T TENSOR REMARK 3 T11: 0.2559 T22: 0.2827 REMARK 3 T33: 0.2497 T12: -0.0186 REMARK 3 T13: -0.0197 T23: 0.0275 REMARK 3 L TENSOR REMARK 3 L11: 0.5207 L22: 0.7505 REMARK 3 L33: 0.5181 L12: -0.2720 REMARK 3 L13: -0.0428 L23: -0.5443 REMARK 3 S TENSOR REMARK 3 S11: -0.0023 S12: -0.1594 S13: -0.0750 REMARK 3 S21: -0.0171 S22: 0.0594 S23: 0.1468 REMARK 3 S31: -0.0799 S32: -0.0891 S33: -0.0641 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 600:721) REMARK 3 ORIGIN FOR THE GROUP (A): -9.9411 -8.1932 -20.4844 REMARK 3 T TENSOR REMARK 3 T11: 0.3982 T22: 0.3800 REMARK 3 T33: 0.2625 T12: 0.0434 REMARK 3 T13: 0.0554 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 0.6535 L22: 1.7715 REMARK 3 L33: 1.4359 L12: -0.8659 REMARK 3 L13: -0.0350 L23: -0.8575 REMARK 3 S TENSOR REMARK 3 S11: -0.0294 S12: 0.0130 S13: -0.2480 REMARK 3 S21: -0.4453 S22: 0.0215 S23: -0.0040 REMARK 3 S31: 0.5139 S32: 0.5500 S33: 0.0413 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2X40 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-JAN-10. REMARK 100 THE DEPOSITION ID IS D_1290042653. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-SEP-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MULTILAYER MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37161 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 34.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.52000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: CCP4, SHELXD, SHARP REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN 3-5 MG/ML, 16% PEG 3350, 0.1 M REMARK 280 KBR, 90 MM BIS-TRIS PROPANE PH 7.4 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 87.60450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 87.60450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 37.47300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 63.62300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 37.47300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.62300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 87.60450 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 37.47300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 63.62300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 87.60450 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 37.47300 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 63.62300 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 50070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 417 REMARK 465 ASP A 418 REMARK 465 SER A 419 REMARK 465 TRP A 420 REMARK 465 GLY A 421 REMARK 465 THR A 422 REMARK 465 ILE A 423 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 29 -144.11 53.75 REMARK 500 VAL A 36 76.80 -109.11 REMARK 500 ARG A 48 -78.71 -34.98 REMARK 500 TYR A 76 48.56 -141.16 REMARK 500 MET A 120 30.19 -146.31 REMARK 500 LYS A 226 -63.58 -105.04 REMARK 500 LYS A 311 32.77 -98.12 REMARK 500 ASN A 312 27.06 46.72 REMARK 500 LYS A 318 70.77 -152.26 REMARK 500 ASN A 341 83.42 -152.78 REMARK 500 SER A 351 124.19 -21.54 REMARK 500 ASP A 468 -99.60 -124.88 REMARK 500 TRP A 519 -134.32 44.94 REMARK 500 ASN A 566 63.13 -153.62 REMARK 500 ASP A 575 -130.45 60.00 REMARK 500 ASN A 704 76.63 -106.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 1722 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 1723 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 1724 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 1725 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1726 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2X41 RELATED DB: PDB REMARK 900 STRUCTURE OF BETA-GLUCOSIDASE 3B FROM THERMOTOGA NEAPOLITANA IN REMARK 900 COMPLEX WITH GLUCOSE REMARK 900 RELATED ID: 2X42 RELATED DB: PDB REMARK 900 STRUCTURE OF BETA-GLUCOSIDASE 3B FROM THERMOTOGA NEAPOLITANA IN REMARK 900 COMPLEX WITH ALPHA- D-GLUCOSE REMARK 900 RELATED ID: 2WT6 RELATED DB: PDB REMARK 900 STRUCTURAL OF BETA-GLUCOSIDASE 3B FROM THERMOTOGA NEAPOLITANA IN REMARK 900 COMPLEX WITH GLYCEROL REMARK 900 RELATED ID: 2WT3 RELATED DB: PDB REMARK 900 STRUCTURAL OF BETA-GLUCOSIDASE 3B FROM THERMOTOGA NEAPOLITANA IN REMARK 900 COMPLEX WITH GLUCOSE : A THERMOSTABLE 3-DOMAIN REPRESENTATIVE OF REMARK 900 GLYCOSIDE HYDROLASE FAMILY 3 REMARK 900 RELATED ID: 2WT5 RELATED DB: PDB REMARK 900 STRUCTURAL OF BETA-GLUCOSIDASE 3B FROM THERMOTOGA NEAPOLITANA IN REMARK 900 COMPLEX WITH ALPHA- D-GLUCOSE DBREF 2X40 A 1 721 UNP Q0GC07 Q0GC07_THENN 1 721 SEQRES 1 A 721 MET GLU LYS VAL ASN GLU ILE LEU SER GLN LEU THR LEU SEQRES 2 A 721 GLU GLU LYS VAL LYS LEU VAL VAL GLY VAL GLY LEU PRO SEQRES 3 A 721 GLY LEU PHE GLY ASN PRO HIS SER ARG VAL ALA GLY ALA SEQRES 4 A 721 ALA GLY GLU THR HIS PRO VAL PRO ARG VAL GLY LEU PRO SEQRES 5 A 721 ALA PHE VAL LEU ALA ASP GLY PRO ALA GLY LEU ARG ILE SEQRES 6 A 721 ASN PRO THR ARG GLU ASN ASP GLU ASN THR TYR TYR THR SEQRES 7 A 721 THR ALA PHE PRO VAL GLU ILE MET LEU ALA SER THR TRP SEQRES 8 A 721 ASN ARG GLU LEU LEU GLU GLU VAL GLY LYS ALA MET GLY SEQRES 9 A 721 GLU GLU VAL ARG GLU TYR GLY VAL ASP VAL LEU LEU ALA SEQRES 10 A 721 PRO ALA MET ASN ILE HIS ARG ASN PRO LEU CYS GLY ARG SEQRES 11 A 721 ASN PHE GLU TYR TYR SER GLU ASP PRO VAL LEU SER GLY SEQRES 12 A 721 GLU MET ALA SER SER PHE VAL LYS GLY VAL GLN SER GLN SEQRES 13 A 721 GLY VAL GLY ALA CYS ILE LYS HIS PHE VAL ALA ASN ASN SEQRES 14 A 721 GLN GLU THR ASN ARG MET VAL VAL ASP THR ILE VAL SER SEQRES 15 A 721 GLU ARG ALA LEU ARG GLU ILE TYR LEU ARG GLY PHE GLU SEQRES 16 A 721 ILE ALA VAL LYS LYS SER LYS PRO TRP SER VAL MET SER SEQRES 17 A 721 ALA TYR ASN LYS LEU ASN GLY LYS TYR CYS SER GLN ASN SEQRES 18 A 721 GLU TRP LEU LEU LYS LYS VAL LEU ARG GLU GLU TRP GLY SEQRES 19 A 721 PHE GLU GLY PHE VAL MET SER ASP TRP TYR ALA GLY ASP SEQRES 20 A 721 ASN PRO VAL GLU GLN LEU LYS ALA GLY ASN ASP LEU ILE SEQRES 21 A 721 MET PRO GLY LYS ALA TYR GLN VAL ASN THR GLU ARG ARG SEQRES 22 A 721 ASP GLU ILE GLU GLU ILE MET GLU ALA LEU LYS GLU GLY SEQRES 23 A 721 LYS LEU SER GLU GLU VAL LEU ASP GLU CYS VAL ARG ASN SEQRES 24 A 721 ILE LEU LYS VAL LEU VAL ASN ALA PRO SER PHE LYS ASN SEQRES 25 A 721 TYR ARG TYR SER ASN LYS PRO ASP LEU GLU LYS HIS ALA SEQRES 26 A 721 LYS VAL ALA TYR GLU ALA GLY ALA GLU GLY VAL VAL LEU SEQRES 27 A 721 LEU ARG ASN GLU GLU ALA LEU PRO LEU SER GLU ASN SER SEQRES 28 A 721 LYS ILE ALA LEU PHE GLY THR GLY GLN ILE GLU THR ILE SEQRES 29 A 721 LYS GLY GLY THR GLY SER GLY ASP THR HIS PRO ARG TYR SEQRES 30 A 721 ALA ILE SER ILE LEU GLU GLY ILE LYS GLU ARG GLY LEU SEQRES 31 A 721 ASN PHE ASP GLU GLU LEU ALA LYS THR TYR GLU ASP TYR SEQRES 32 A 721 ILE LYS LYS MET ARG GLU THR GLU GLU TYR LYS PRO ARG SEQRES 33 A 721 ARG ASP SER TRP GLY THR ILE ILE LYS PRO LYS LEU PRO SEQRES 34 A 721 GLU ASN PHE LEU SER GLU LYS GLU ILE HIS LYS LEU ALA SEQRES 35 A 721 LYS LYS ASN ASP VAL ALA VAL ILE VAL ILE SER ARG ILE SEQRES 36 A 721 SER GLY GLU GLY TYR ASP ARG LYS PRO VAL LYS GLY ASP SEQRES 37 A 721 PHE TYR LEU SER ASP ASP GLU THR ASP LEU ILE LYS THR SEQRES 38 A 721 VAL SER ARG GLU PHE HIS GLU GLN GLY LYS LYS VAL ILE SEQRES 39 A 721 VAL LEU LEU ASN ILE GLY SER PRO VAL GLU VAL VAL SER SEQRES 40 A 721 TRP ARG ASP LEU VAL ASP GLY ILE LEU LEU VAL TRP GLN SEQRES 41 A 721 ALA GLY GLN GLU THR GLY ARG ILE VAL ALA ASP VAL LEU SEQRES 42 A 721 THR GLY ARG ILE ASN PRO SER GLY LYS LEU PRO THR THR SEQRES 43 A 721 PHE PRO ARG ASP TYR SER ASP VAL PRO SER TRP THR PHE SEQRES 44 A 721 PRO GLY GLU PRO LYS ASP ASN PRO GLN LYS VAL VAL TYR SEQRES 45 A 721 GLU GLU ASP ILE TYR VAL GLY TYR ARG TYR TYR ASP THR SEQRES 46 A 721 PHE GLY VAL GLU PRO ALA TYR GLU PHE GLY TYR GLY LEU SEQRES 47 A 721 SER TYR THR THR PHE GLU TYR SER ASP LEU ASN VAL SER SEQRES 48 A 721 PHE ASP GLY GLU THR LEU ARG VAL GLN TYR ARG ILE GLU SEQRES 49 A 721 ASN THR GLY GLY ARG ALA GLY LYS GLU VAL SER GLN VAL SEQRES 50 A 721 TYR ILE LYS ALA PRO LYS GLY LYS ILE ASP LYS PRO PHE SEQRES 51 A 721 GLN GLU LEU LYS ALA PHE HIS LYS THR ARG LEU LEU ASN SEQRES 52 A 721 PRO GLY GLU SER GLU GLU VAL VAL LEU GLU ILE PRO VAL SEQRES 53 A 721 ARG ASP LEU ALA SER PHE ASN GLY GLU GLU TRP VAL VAL SEQRES 54 A 721 GLU ALA GLY GLU TYR GLU VAL ARG VAL GLY ALA SER SER SEQRES 55 A 721 ARG ASN ILE LYS LEU LYS GLY THR PHE SER VAL GLY GLU SEQRES 56 A 721 GLU ARG ARG PHE LYS PRO HET BR A1722 1 HET BR A1723 1 HET BR A1724 1 HET BR A1725 1 HET GOL A1726 6 HETNAM BR BROMIDE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 BR 4(BR 1-) FORMUL 6 GOL C3 H8 O3 FORMUL 7 HOH *231(H2 O) HELIX 1 1 GLU A 2 LEU A 11 1 10 HELIX 2 2 THR A 12 VAL A 20 1 9 HELIX 3 3 PRO A 47 GLY A 50 5 4 HELIX 4 4 VAL A 83 THR A 90 1 8 HELIX 5 5 ASN A 92 TYR A 110 1 19 HELIX 6 6 ARG A 130 TYR A 134 5 5 HELIX 7 7 ASP A 138 SER A 155 1 18 HELIX 8 8 SER A 182 ILE A 189 1 8 HELIX 9 9 ILE A 189 LYS A 202 1 14 HELIX 10 10 ASN A 221 LYS A 226 1 6 HELIX 11 11 LYS A 227 TRP A 233 1 7 HELIX 12 12 ASN A 248 GLY A 256 1 9 HELIX 13 13 LYS A 264 VAL A 268 5 5 HELIX 14 14 ASP A 274 GLU A 285 1 12 HELIX 15 15 SER A 289 VAL A 305 1 17 HELIX 16 16 ASP A 320 GLU A 334 1 15 HELIX 17 17 GLY A 357 ILE A 361 5 5 HELIX 18 18 SER A 380 ARG A 388 1 9 HELIX 19 19 ASP A 393 GLU A 409 1 17 HELIX 20 20 THR A 410 LYS A 414 5 5 HELIX 21 21 SER A 434 ASN A 445 1 12 HELIX 22 22 SER A 472 GLN A 489 1 18 HELIX 23 23 VAL A 505 ASP A 510 1 6 HELIX 24 24 ALA A 521 GLN A 523 5 3 HELIX 25 25 GLU A 524 THR A 534 1 11 HELIX 26 26 ASP A 550 VAL A 554 5 5 HELIX 27 27 GLY A 579 GLY A 587 1 9 HELIX 28 28 ARG A 677 ALA A 680 5 4 SHEET 1 AA 6 GLY A 41 GLU A 42 0 SHEET 2 AA 6 VAL A 55 ASP A 58 -1 O LEU A 56 N GLY A 41 SHEET 3 AA 6 VAL A 114 LEU A 116 1 O VAL A 114 N ALA A 57 SHEET 4 AA 6 GLY A 159 PHE A 165 1 O GLY A 159 N LEU A 115 SHEET 5 AA 6 SER A 205 SER A 208 1 O SER A 205 N ILE A 162 SHEET 6 AA 6 PHE A 238 SER A 241 1 O PHE A 238 N VAL A 206 SHEET 1 AB 4 LYS A 216 TYR A 217 0 SHEET 2 AB 4 LYS A 212 LEU A 213 -1 O LEU A 213 N LYS A 216 SHEET 3 AB 4 ASP A 178 ILE A 180 1 N THR A 179 O LYS A 212 SHEET 4 AB 4 LYS A 569 VAL A 571 1 O VAL A 570 N ILE A 180 SHEET 1 AC 6 VAL A 337 ASN A 341 0 SHEET 2 AC 6 GLY A 514 LEU A 517 -1 O ILE A 515 N LEU A 339 SHEET 3 AC 6 LYS A 492 ASN A 498 1 O VAL A 495 N LEU A 516 SHEET 4 AC 6 VAL A 447 SER A 453 1 O ALA A 448 N ILE A 494 SHEET 5 AC 6 LYS A 352 PHE A 356 1 O ALA A 354 N VAL A 449 SHEET 6 AC 6 ASN A 391 PHE A 392 1 O ASN A 391 N ILE A 353 SHEET 1 AD 3 PHE A 603 PHE A 612 0 SHEET 2 AD 3 THR A 616 ASN A 625 -1 O ARG A 618 N SER A 611 SHEET 3 AD 3 SER A 667 PRO A 675 -1 O GLU A 668 N ILE A 623 SHEET 1 AE 4 GLU A 652 LYS A 658 0 SHEET 2 AE 4 VAL A 634 LYS A 640 -1 O SER A 635 N HIS A 657 SHEET 3 AE 4 GLY A 692 GLY A 699 -1 O GLU A 695 N LYS A 640 SHEET 4 AE 4 ILE A 705 VAL A 713 -1 N LYS A 706 O VAL A 698 SHEET 1 AF 3 SER A 681 PHE A 682 0 SHEET 2 AF 3 TRP A 687 VAL A 689 -1 O VAL A 688 N SER A 681 SHEET 3 AF 3 ARG A 717 PHE A 719 -1 O ARG A 717 N VAL A 689 CISPEP 1 ASP A 58 GLY A 59 0 -1.80 CISPEP 2 ALA A 117 PRO A 118 0 2.14 CISPEP 3 LYS A 163 HIS A 164 0 -6.00 CISPEP 4 PHE A 165 VAL A 166 0 1.10 CISPEP 5 MET A 261 PRO A 262 0 4.34 CISPEP 6 LEU A 345 PRO A 346 0 -2.61 CISPEP 7 PHE A 559 PRO A 560 0 2.40 CISPEP 8 GLU A 562 PRO A 563 0 -2.89 SITE 1 AC1 2 ARG A 340 TYR A 592 SITE 1 AC2 2 SER A 456 GLY A 500 SITE 1 AC3 5 ASN A 121 ILE A 122 ALA A 167 ASN A 169 SITE 2 AC3 5 TYR A 190 SITE 1 AC4 1 VAL A 571 SITE 1 AC5 7 ASP A 58 LYS A 163 HIS A 164 ASP A 242 SITE 2 AC5 7 TRP A 243 SER A 370 HOH A2123 CRYST1 74.946 127.246 175.209 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013343 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007859 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005707 0.00000