HEADER ALLERGEN 28-JAN-10 2X45 TITLE CRYSTAL STRUCTURE OF ARG R 1 IN COMPLEX WITH HISTAMINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALLERGEN ARG R 1; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARGAS REFLEXUS; SOURCE 3 ORGANISM_COMMON: EUROPEAN PIGEON TICK; SOURCE 4 ORGANISM_TAXID: 34604; SOURCE 5 ORGAN: SALIVARY GLAND; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ORIGAMI(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET-23A KEYWDS ALLERGEN EXPDTA X-RAY DIFFRACTION AUTHOR G.C.PAESEN,C.SIEBOLD,N.SYME,K.HARLOS,S.C.GRAHAM,C.HILGER,S.W.HOMANS, AUTHOR 2 F.HENTGES,D.I.STUART REVDAT 2 20-DEC-23 2X45 1 REMARK SHEET REVDAT 1 09-FEB-11 2X45 0 JRNL AUTH G.C.PAESEN,C.SIEBOLD,N.SYME,K.HARLOS,S.C.GRAHAM,C.HILGER, JRNL AUTH 2 S.W.HOMANS,F.HENTGES,D.I.STUART JRNL TITL CRYSTAL STRUCTURE OF THE ALLERGEN ARG R 1, A JRNL TITL 2 HISTAMINE-BINDING LIPOCALIN FROM A SOFT TICK JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 75281 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.133 REMARK 3 R VALUE (WORKING SET) : 0.130 REMARK 3 FREE R VALUE : 0.183 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3948 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5522 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.1930 REMARK 3 BIN FREE R VALUE SET COUNT : 293 REMARK 3 BIN FREE R VALUE : 0.2580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3243 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 72 REMARK 3 SOLVENT ATOMS : 908 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 7.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.29000 REMARK 3 B22 (A**2) : -0.28000 REMARK 3 B33 (A**2) : 0.71000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.26000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.065 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.063 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.038 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.134 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3612 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2492 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4914 ; 1.590 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6097 ; 0.868 ; 3.010 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 497 ; 6.088 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 127 ;39.315 ;25.748 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 658 ;13.292 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ;12.073 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 535 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4030 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 663 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 697 ; 0.210 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2459 ; 0.199 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1709 ; 0.181 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1835 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 689 ; 0.188 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 6 ; 0.205 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 26 ; 0.165 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 85 ; 0.207 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 84 ; 0.197 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2908 ; 1.758 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 962 ; 0.604 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3652 ; 2.222 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1680 ; 3.196 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1230 ; 3.867 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 7585 ; 1.463 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 908 ; 7.512 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 5995 ; 2.684 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2X45 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-JAN-10. REMARK 100 THE DEPOSITION ID IS D_1290042678. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79040 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.83000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2X46 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% POLYETHYLENE GLYCOL 4000, 0.1 M REMARK 280 TRIS.HCL, PH 8.5, 0.2 M SODIUM ACETATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 53.57350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.90850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 53.57350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.90850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 16 CG SD CE REMARK 470 MET B 16 CG SD CE REMARK 470 MET C 16 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2171 O HOH A 2307 1.82 REMARK 500 N LYS A 154 O HOH A 2299 1.92 REMARK 500 OE2 GLU C 141 O HOH C 2264 1.94 REMARK 500 O MET C 16 O HOH C 2001 1.99 REMARK 500 OG SER B 145 O HOH B 2278 2.01 REMARK 500 N LYS B 154 O HOH B 2294 2.01 REMARK 500 NZ LYS A 126 O HOH A 2246 2.15 REMARK 500 O HOH A 2014 O HOH A 2221 2.15 REMARK 500 OG SER C 145 O HOH C 2274 2.16 REMARK 500 ND2 ASN C 61 O HOH C 2140 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2263 O HOH C 2153 1545 2.04 REMARK 500 O HOH B 2262 O HOH C 2011 4445 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET C 16 CA MET C 16 CB -0.301 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 73 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP B 17 CB - CG - OD1 ANGL. DEV. = 7.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 22 69.22 -108.11 REMARK 500 LYS A 22 68.25 -107.79 REMARK 500 LYS A 107 -44.81 -142.44 REMARK 500 LYS A 153 -99.34 -118.75 REMARK 500 LYS A 154 71.90 -102.53 REMARK 500 LYS B 22 71.59 -106.79 REMARK 500 LYS B 22 71.49 -106.79 REMARK 500 LYS B 107 -44.72 -143.81 REMARK 500 LYS B 153 -96.01 -121.45 REMARK 500 LYS B 154 71.99 -103.09 REMARK 500 LYS C 22 70.02 -109.12 REMARK 500 LYS C 22 70.08 -108.88 REMARK 500 LYS C 107 -44.28 -145.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2037 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH A2158 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH B2018 DISTANCE = 6.46 ANGSTROMS REMARK 525 HOH B2047 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH B2069 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH B2151 DISTANCE = 6.61 ANGSTROMS REMARK 525 HOH C2047 DISTANCE = 6.42 ANGSTROMS REMARK 525 HOH C2098 DISTANCE = 5.89 ANGSTROMS REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 8-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 9-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 700 THE SHEETS PRESENTED AS "BA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 8-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 9-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 700 THE SHEETS PRESENTED AS "CA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 9-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 9-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HSM A 1160 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HSM A 1161 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HSM B 1160 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HSM B 1161 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HSM C 1160 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HSM C 1161 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HSM A 1162 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HSM B 1162 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HSM C 1162 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2X46 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SEMET ARG R 1 DBREF 2X45 A 17 159 UNP Q5GQ85 ARGR1_ARGRF 17 159 DBREF 2X45 B 17 159 UNP Q5GQ85 ARGR1_ARGRF 17 159 DBREF 2X45 C 17 159 UNP Q5GQ85 ARGR1_ARGRF 17 159 SEQADV 2X45 MET A 16 UNP Q5GQ85 EXPRESSION TAG SEQADV 2X45 MET B 16 UNP Q5GQ85 EXPRESSION TAG SEQADV 2X45 MET C 16 UNP Q5GQ85 EXPRESSION TAG SEQRES 1 A 144 MET ASP ASP CYS SER GLY LYS THR ASP ALA TRP THR SER SEQRES 2 A 144 ILE LYS GLY PRO LYS THR GLY GLY TYR TRP LEU LYS GLN SEQRES 3 A 144 THR THR LYS THR GLY GLU ASN GLU CYS THR TYR VAL LYS SEQRES 4 A 144 GLY THR ASP PHE LYS GLU ASN THR LYS THR ALA THR TYR SEQRES 5 A 144 THR TYR GLY TYR LYS ASP ALA SER GLY LYS LEU THR LYS SEQRES 6 A 144 THR THR GLY THR ALA THR ALA LYS GLY SER ASP ILE VAL SEQRES 7 A 144 VAL GLY SER ASP THR SER THR VAL ILE TYR THR ASP GLY SEQRES 8 A 144 LYS THR CYS ASP VAL VAL LYS HIS GLY GLY HIS THR GLU SEQRES 9 A 144 LEU TRP VAL HIS SER SER LYS THR SER GLY GLY TYR ASN SEQRES 10 A 144 ASN CYS CYS ASP LYS LYS PHE THR GLU THR ARG GLY SER SEQRES 11 A 144 THR PRO ALA ASN GLU VAL TYR LYS LYS CYS PRO GLY MET SEQRES 12 A 144 PRO SEQRES 1 B 144 MET ASP ASP CYS SER GLY LYS THR ASP ALA TRP THR SER SEQRES 2 B 144 ILE LYS GLY PRO LYS THR GLY GLY TYR TRP LEU LYS GLN SEQRES 3 B 144 THR THR LYS THR GLY GLU ASN GLU CYS THR TYR VAL LYS SEQRES 4 B 144 GLY THR ASP PHE LYS GLU ASN THR LYS THR ALA THR TYR SEQRES 5 B 144 THR TYR GLY TYR LYS ASP ALA SER GLY LYS LEU THR LYS SEQRES 6 B 144 THR THR GLY THR ALA THR ALA LYS GLY SER ASP ILE VAL SEQRES 7 B 144 VAL GLY SER ASP THR SER THR VAL ILE TYR THR ASP GLY SEQRES 8 B 144 LYS THR CYS ASP VAL VAL LYS HIS GLY GLY HIS THR GLU SEQRES 9 B 144 LEU TRP VAL HIS SER SER LYS THR SER GLY GLY TYR ASN SEQRES 10 B 144 ASN CYS CYS ASP LYS LYS PHE THR GLU THR ARG GLY SER SEQRES 11 B 144 THR PRO ALA ASN GLU VAL TYR LYS LYS CYS PRO GLY MET SEQRES 12 B 144 PRO SEQRES 1 C 144 MET ASP ASP CYS SER GLY LYS THR ASP ALA TRP THR SER SEQRES 2 C 144 ILE LYS GLY PRO LYS THR GLY GLY TYR TRP LEU LYS GLN SEQRES 3 C 144 THR THR LYS THR GLY GLU ASN GLU CYS THR TYR VAL LYS SEQRES 4 C 144 GLY THR ASP PHE LYS GLU ASN THR LYS THR ALA THR TYR SEQRES 5 C 144 THR TYR GLY TYR LYS ASP ALA SER GLY LYS LEU THR LYS SEQRES 6 C 144 THR THR GLY THR ALA THR ALA LYS GLY SER ASP ILE VAL SEQRES 7 C 144 VAL GLY SER ASP THR SER THR VAL ILE TYR THR ASP GLY SEQRES 8 C 144 LYS THR CYS ASP VAL VAL LYS HIS GLY GLY HIS THR GLU SEQRES 9 C 144 LEU TRP VAL HIS SER SER LYS THR SER GLY GLY TYR ASN SEQRES 10 C 144 ASN CYS CYS ASP LYS LYS PHE THR GLU THR ARG GLY SER SEQRES 11 C 144 THR PRO ALA ASN GLU VAL TYR LYS LYS CYS PRO GLY MET SEQRES 12 C 144 PRO HET HSM A1160 8 HET HSM A1161 8 HET HSM A1162 8 HET HSM B1160 8 HET HSM B1161 8 HET HSM B1162 8 HET HSM C1160 8 HET HSM C1161 8 HET HSM C1162 8 HETNAM HSM HISTAMINE FORMUL 4 HSM 9(C5 H9 N3) FORMUL 13 HOH *908(H2 O) HELIX 1 1 MET A 16 SER A 20 5 5 HELIX 2 2 ASP A 24 GLY A 31 1 8 HELIX 3 3 SER A 125 THR A 127 5 3 HELIX 4 4 ASN A 132 GLY A 144 1 13 HELIX 5 5 MET B 16 SER B 20 5 5 HELIX 6 6 ASP B 24 GLY B 31 1 8 HELIX 7 7 SER B 125 THR B 127 5 3 HELIX 8 8 ASN B 132 GLY B 144 1 13 HELIX 9 9 ASP C 24 GLY C 31 1 8 HELIX 10 10 SER C 125 THR C 127 5 3 HELIX 11 11 ASN C 132 GLY C 144 1 13 SHEET 1 AA 9 TYR A 37 THR A 42 0 SHEET 2 AA 9 TYR A 52 LYS A 59 -1 O VAL A 53 N TYR A 37 SHEET 3 AA 9 THR A 64 GLY A 70 -1 O THR A 64 N LYS A 59 SHEET 4 AA 9 THR A 81 LYS A 88 -1 O THR A 81 N TYR A 69 SHEET 5 AA 9 ASP A 91 VAL A 94 -1 O ASP A 91 N LYS A 88 SHEET 6 AA 9 ASP A 97 THR A 104 -1 O ASP A 97 N VAL A 94 SHEET 7 AA 9 CYS A 109 HIS A 114 -1 O VAL A 111 N ILE A 102 SHEET 8 AA 9 HIS A 117 HIS A 123 -1 O HIS A 117 N HIS A 114 SHEET 9 AA 9 TYR A 37 THR A 42 0 SHEET 1 BA 9 TYR B 37 THR B 42 0 SHEET 2 BA 9 TYR B 52 LYS B 59 -1 O VAL B 53 N TYR B 37 SHEET 3 BA 9 THR B 64 GLY B 70 -1 O THR B 64 N LYS B 59 SHEET 4 BA 9 THR B 81 LYS B 88 -1 O THR B 81 N TYR B 69 SHEET 5 BA 9 ASP B 91 VAL B 94 -1 O ASP B 91 N LYS B 88 SHEET 6 BA 9 ASP B 97 THR B 104 -1 O ASP B 97 N VAL B 94 SHEET 7 BA 9 CYS B 109 HIS B 114 -1 O VAL B 111 N ILE B 102 SHEET 8 BA 9 HIS B 117 HIS B 123 -1 O HIS B 117 N HIS B 114 SHEET 9 BA 9 TYR B 37 THR B 42 0 SHEET 1 CA10 TYR C 37 THR C 42 0 SHEET 2 CA10 TYR C 52 LYS C 59 -1 O VAL C 53 N TYR C 37 SHEET 3 CA10 THR C 64 GLY C 70 -1 O THR C 64 N LYS C 59 SHEET 4 CA10 THR C 81 LYS C 88 -1 O THR C 81 N TYR C 69 SHEET 5 CA10 ASP C 91 VAL C 94 -1 O ASP C 91 N LYS C 88 SHEET 6 CA10 ASP C 97 THR C 104 -1 O ASP C 97 N VAL C 94 SHEET 7 CA10 CYS C 109 HIS C 114 -1 O VAL C 111 N ILE C 102 SHEET 8 CA10 HIS C 117 HIS C 123 -1 O HIS C 117 N HIS C 114 SHEET 9 CA10 ASN C 149 GLU C 150 -1 O ASN C 149 N THR C 42 SHEET 10 CA10 TYR C 37 THR C 42 -1 O THR C 42 N ASN C 149 SSBOND 1 CYS A 19 CYS A 134 1555 1555 2.05 SSBOND 2 CYS A 50 CYS A 155 1555 1555 2.02 SSBOND 3 CYS A 109 CYS A 135 1555 1555 2.09 SSBOND 4 CYS B 19 CYS B 134 1555 1555 2.04 SSBOND 5 CYS B 50 CYS B 155 1555 1555 2.00 SSBOND 6 CYS B 109 CYS B 135 1555 1555 2.06 SSBOND 7 CYS C 19 CYS C 134 1555 1555 2.02 SSBOND 8 CYS C 50 CYS C 155 1555 1555 2.01 SSBOND 9 CYS C 109 CYS C 135 1555 1555 2.06 CISPEP 1 MET C 16 ASP C 17 0 14.32 SITE 1 AC1 6 SER A 28 TYR A 37 TYR A 67 ASP A 110 SITE 2 AC1 6 TRP A 121 HOH A2237 SITE 1 AC2 8 VAL A 53 ILE A 92 ASP A 97 THR A 98 SITE 2 AC2 8 SER A 99 HSM A1162 HOH A2210 HOH A2306 SITE 1 AC3 7 SER B 28 TYR B 37 TYR B 67 ASP B 110 SITE 2 AC3 7 TRP B 121 HOH B2161 HOH B2235 SITE 1 AC4 10 VAL B 53 TYR B 69 ILE B 92 VAL B 94 SITE 2 AC4 10 ASP B 97 THR B 98 SER B 99 HSM B1162 SITE 3 AC4 10 HOH B2114 HOH B2208 SITE 1 AC5 7 SER C 28 TYR C 37 TYR C 67 ASP C 110 SITE 2 AC5 7 TRP C 121 HOH C2033 HOH C2230 SITE 1 AC6 8 VAL C 53 ILE C 92 VAL C 94 ASP C 97 SITE 2 AC6 8 SER C 99 HSM C1162 HOH C2111 HOH C2205 SITE 1 AC7 7 HIS A 114 GLU A 119 HSM A1161 HOH A2090 SITE 2 AC7 7 HOH A2307 HOH A2308 HOH A2309 SITE 1 AC8 6 GLU B 47 HIS B 114 GLU B 119 HSM B1161 SITE 2 AC8 6 HOH B2104 HOH B2301 SITE 1 AC9 5 HIS C 114 GLU C 119 HSM C1161 HOH C2296 SITE 2 AC9 5 HOH C2297 CRYST1 107.147 61.817 63.871 90.00 105.14 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009333 0.000000 0.002525 0.00000 SCALE2 0.000000 0.016177 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016220 0.00000 MTRIX1 1 0.501900 0.864900 0.009191 15.97000 1 MTRIX2 1 0.864900 -0.501900 0.000519 -27.71000 1 MTRIX3 1 0.005062 0.007689 -1.000000 0.56320 1 MTRIX1 2 -0.499400 -0.866300 -0.013670 -15.86000 1 MTRIX2 2 0.866400 -0.499300 -0.005043 -27.46000 1 MTRIX3 2 -0.002457 -0.014360 0.999900 0.19500 1 MTRIX1 3 0.498700 -0.866700 -0.006138 -15.77000 1 MTRIX2 3 -0.866800 -0.498700 -0.001613 -27.65000 1 MTRIX3 3 -0.001663 0.006125 -1.000000 0.07579 1