HEADER HYDROLASE 05-FEB-10 2X55 TITLE YERSINIA PESTIS PLASMINOGEN ACTIVATOR PLA (NATIVE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: COAGULASE/FIBRINOLYSIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PLASMINOGEN ACTIVATOR, PLA; COMPND 5 EC: 3.4.23.48; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PESTIS; SOURCE 3 ORGANISM_TAXID: 632; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_VARIANT: C43; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PB22 KEYWDS TRANSMEMBRANE, ASPARTYL PROTEASE, CELL OUTER MEMBRANE, OMPTIN, KEYWDS 2 PROTEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR E.EREN,M.MURPHY,J.GOGUEN,B.VAN DEN BERG REVDAT 4 01-MAY-24 2X55 1 REMARK REVDAT 3 24-JAN-18 2X55 1 SOURCE JRNL REVDAT 2 28-MAR-12 2X55 1 KEYWDS JRNL REMARK VERSN REVDAT 1 28-JUL-10 2X55 0 JRNL AUTH E.EREN,M.MURPHY,J.GOGUEN,B.VAN DEN BERG JRNL TITL AN ACTIVE SITE WATER NETWORK IN THE PLASMINOGEN ACTIVATOR JRNL TITL 2 PLA FROM YERSINIA PESTIS JRNL REF STRUCTURE V. 18 809 2010 JRNL REFN ISSN 0969-2126 JRNL PMID 20637417 JRNL DOI 10.1016/J.STR.2010.03.013 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6_289) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.140 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 3 NUMBER OF REFLECTIONS : 60269 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3538 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9820 - 5.3780 0.99 2641 164 0.2611 0.2823 REMARK 3 2 5.3780 - 4.2825 0.99 2511 155 0.1848 0.1908 REMARK 3 3 4.2825 - 3.7452 0.99 2455 156 0.1905 0.1828 REMARK 3 4 3.7452 - 3.4046 0.99 2462 152 0.1701 0.1813 REMARK 3 5 3.4046 - 3.1616 0.98 2428 150 0.1763 0.1807 REMARK 3 6 3.1616 - 2.9758 0.97 2361 148 0.1817 0.1893 REMARK 3 7 2.9758 - 2.8272 0.96 2337 149 0.1916 0.2111 REMARK 3 8 2.8272 - 2.7045 0.96 2334 143 0.1974 0.2520 REMARK 3 9 2.7045 - 2.6006 0.96 2326 146 0.1998 0.2069 REMARK 3 10 2.6006 - 2.5110 0.94 2282 146 0.1875 0.1922 REMARK 3 11 2.5110 - 2.4326 0.95 2306 145 0.2030 0.2143 REMARK 3 12 2.4326 - 2.3632 0.94 2282 146 0.1891 0.2262 REMARK 3 13 2.3632 - 2.3011 0.94 2261 139 0.1849 0.2131 REMARK 3 14 2.3011 - 2.2450 0.95 2297 135 0.1810 0.1856 REMARK 3 15 2.2450 - 2.1941 0.95 2289 139 0.1738 0.1996 REMARK 3 16 2.1941 - 2.1474 0.94 2263 142 0.1723 0.1873 REMARK 3 17 2.1474 - 2.1045 0.91 2211 116 0.1705 0.1716 REMARK 3 18 2.1045 - 2.0648 0.92 2216 133 0.1688 0.2133 REMARK 3 19 2.0648 - 2.0280 0.92 2195 151 0.1644 0.1889 REMARK 3 20 2.0280 - 1.9937 0.92 2216 140 0.1706 0.1806 REMARK 3 21 1.9937 - 1.9615 0.87 2086 132 0.1692 0.1884 REMARK 3 22 1.9615 - 1.9314 0.88 2117 140 0.1831 0.1964 REMARK 3 23 1.9314 - 1.9030 0.88 2112 129 0.1923 0.1953 REMARK 3 24 1.9030 - 1.8762 0.83 1954 135 0.2044 0.2091 REMARK 3 25 1.8762 - 1.8509 0.74 1789 107 0.2295 0.2130 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 78.32 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.970 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.41 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.51890 REMARK 3 B22 (A**2) : 1.51890 REMARK 3 B33 (A**2) : -6.86040 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2434 REMARK 3 ANGLE : 1.240 3212 REMARK 3 CHIRALITY : 0.100 304 REMARK 3 PLANARITY : 0.005 396 REMARK 3 DIHEDRAL : 21.136 902 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 5:53) REMARK 3 ORIGIN FOR THE GROUP (A): -12.1987 58.6957 10.0133 REMARK 3 T TENSOR REMARK 3 T11: 0.0617 T22: 0.0996 REMARK 3 T33: 0.1167 T12: -0.0262 REMARK 3 T13: -0.0007 T23: 0.0350 REMARK 3 L TENSOR REMARK 3 L11: 0.4283 L22: 0.1731 REMARK 3 L33: 0.3863 L12: 0.3382 REMARK 3 L13: -0.3342 L23: 0.0288 REMARK 3 S TENSOR REMARK 3 S11: -0.0324 S12: -0.1389 S13: -0.0242 REMARK 3 S21: -0.0727 S22: -0.0394 S23: -0.0330 REMARK 3 S31: 0.0625 S32: 0.0540 S33: 0.0717 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 54:94) REMARK 3 ORIGIN FOR THE GROUP (A): -12.6181 60.3419 9.3035 REMARK 3 T TENSOR REMARK 3 T11: 0.0761 T22: 0.1041 REMARK 3 T33: 0.1187 T12: -0.0157 REMARK 3 T13: -0.0121 T23: 0.0452 REMARK 3 L TENSOR REMARK 3 L11: 1.4991 L22: -0.0121 REMARK 3 L33: 1.0469 L12: -0.6073 REMARK 3 L13: 0.4356 L23: 0.0911 REMARK 3 S TENSOR REMARK 3 S11: 0.1148 S12: 0.0921 S13: 0.1873 REMARK 3 S21: -0.0654 S22: -0.0577 S23: -0.0703 REMARK 3 S31: 0.1699 S32: 0.0035 S33: -0.0513 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 95:134) REMARK 3 ORIGIN FOR THE GROUP (A): -17.3869 57.7243 6.3801 REMARK 3 T TENSOR REMARK 3 T11: 0.0699 T22: 0.0778 REMARK 3 T33: 0.1044 T12: -0.0585 REMARK 3 T13: -0.0163 T23: 0.0477 REMARK 3 L TENSOR REMARK 3 L11: 0.8609 L22: -0.1639 REMARK 3 L33: 2.0534 L12: -0.0484 REMARK 3 L13: 0.8936 L23: 0.1801 REMARK 3 S TENSOR REMARK 3 S11: 0.0412 S12: -0.1921 S13: 0.0817 REMARK 3 S21: 0.0175 S22: -0.0708 S23: -0.0210 REMARK 3 S31: 0.2291 S32: -0.3105 S33: 0.0524 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 135:177) REMARK 3 ORIGIN FOR THE GROUP (A): -0.6037 65.0204 16.6572 REMARK 3 T TENSOR REMARK 3 T11: 0.0411 T22: 0.2182 REMARK 3 T33: 0.1026 T12: -0.0007 REMARK 3 T13: -0.0096 T23: 0.0258 REMARK 3 L TENSOR REMARK 3 L11: 0.0154 L22: 0.2653 REMARK 3 L33: 1.6012 L12: 0.4676 REMARK 3 L13: -0.1244 L23: 0.2010 REMARK 3 S TENSOR REMARK 3 S11: -0.1148 S12: -0.0571 S13: 0.1377 REMARK 3 S21: 0.0124 S22: 0.0510 S23: -0.0587 REMARK 3 S31: 0.0313 S32: 0.4205 S33: 0.0628 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 178:232) REMARK 3 ORIGIN FOR THE GROUP (A): -14.1853 60.3329 5.3284 REMARK 3 T TENSOR REMARK 3 T11: 0.1172 T22: 0.1616 REMARK 3 T33: 0.1575 T12: -0.0690 REMARK 3 T13: -0.0066 T23: 0.0287 REMARK 3 L TENSOR REMARK 3 L11: 0.7665 L22: 0.4109 REMARK 3 L33: 0.8204 L12: 0.4469 REMARK 3 L13: -0.2121 L23: 0.1975 REMARK 3 S TENSOR REMARK 3 S11: -0.1148 S12: 0.2396 S13: -0.0732 REMARK 3 S21: -0.0593 S22: 0.1234 S23: -0.0851 REMARK 3 S31: -0.0281 S32: 0.0107 S33: 0.0165 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 233:293) REMARK 3 ORIGIN FOR THE GROUP (A): -20.4763 54.4083 9.1473 REMARK 3 T TENSOR REMARK 3 T11: 0.0730 T22: 0.1443 REMARK 3 T33: 0.0952 T12: -0.0540 REMARK 3 T13: -0.0051 T23: 0.0192 REMARK 3 L TENSOR REMARK 3 L11: 0.5689 L22: 1.1830 REMARK 3 L33: 0.5840 L12: 0.8249 REMARK 3 L13: -0.1857 L23: 0.0218 REMARK 3 S TENSOR REMARK 3 S11: -0.0643 S12: 0.1039 S13: -0.2257 REMARK 3 S21: -0.0710 S22: 0.0061 S23: -0.2018 REMARK 3 S31: 0.0822 S32: 0.0399 S33: 0.0514 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2X55 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1290042795. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60190 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.10 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 46.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NATIVE PLA OSMIUM DERIVATIVE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 75.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 27% PEG 400, 0.1 M LISO4, 0.1 M REMARK 280 LITHIUM CITRATE, PH 4.8 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 86.95067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 43.47533 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 65.21300 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 21.73767 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 108.68833 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 86.95067 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 43.47533 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 21.73767 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 65.21300 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 108.68833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2131 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 GLY A 253 REMARK 465 LYS A 254 REMARK 465 GLY A 255 REMARK 465 GLY A 256 REMARK 465 THR A 257 REMARK 465 GLN A 258 REMARK 465 THR A 259 REMARK 465 ILE A 260 REMARK 465 ASP A 261 REMARK 465 LYS A 262 REMARK 465 ASN A 263 REMARK 465 SER A 264 REMARK 465 GLY A 265 REMARK 465 ASP A 266 REMARK 465 SER A 267 REMARK 465 VAL A 268 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 4 CB CG CD OE1 NE2 REMARK 470 LEU A 5 CB CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2059 O HOH A 2061 2.09 REMARK 500 O HOH A 2061 O HOH A 2163 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 5 -101.01 143.83 REMARK 500 LYS A 48 -65.01 -91.60 REMARK 500 TRP A 87 78.92 -110.10 REMARK 500 ASN A 186 -123.00 54.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2001 DISTANCE = 5.87 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 C8E A 1293 REMARK 610 C8E A 1294 REMARK 610 C8E A 1295 REMARK 610 C8E A 1296 REMARK 610 C8E A 1297 REMARK 610 C8E A 1298 REMARK 610 C8E A 1299 REMARK 610 C8E A 1300 REMARK 610 C8E A 1301 REMARK 610 C8E A 1302 REMARK 610 C8E A 1303 REMARK 610 C8E A 1304 REMARK 610 C8E A 1305 REMARK 610 C8E A 1306 REMARK 610 C8E A 1307 REMARK 610 C8E A 1308 REMARK 610 C8E A 1309 REMARK 610 C8E A 1310 REMARK 610 C8E A 1311 REMARK 610 C8E A 1312 REMARK 610 C8E A 1313 REMARK 610 C8E A 1314 REMARK 610 C8E A 1315 REMARK 700 REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 10-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 11-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C8E A 1293 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C8E A 1295 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C8E A 1296 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C8E A 1297 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C8E A 1298 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C8E A 1300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C8E A 1301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C8E A 1302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C8E A 1303 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C8E A 1304 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C8E A 1305 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C8E A 1306 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C8E A 1307 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C8E A 1308 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C8E A 1309 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C8E A 1310 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C8E A 1311 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C8E A 1312 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C8E A 1313 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C8E A 1314 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C8E A 1315 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1316 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1317 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2X56 RELATED DB: PDB REMARK 900 YERSINIA PESTIS PLASMINOGEN ACTIVATOR PLA ( NATIVE) REMARK 900 RELATED ID: 2X4M RELATED DB: PDB REMARK 900 YERSINIA PESTIS PLASMINOGEN ACTIVATOR PLA DBREF 2X55 A 1 292 UNP P17811 COLY_YERPE 21 312 SEQADV 2X55 GLY A 293 UNP P17811 EXPRESSION TAG SEQRES 1 A 293 ALA SER SER GLN LEU ILE PRO ASN ILE SER PRO ASP SER SEQRES 2 A 293 PHE THR VAL ALA ALA SER THR GLY MET LEU SER GLY LYS SEQRES 3 A 293 SER HIS GLU MET LEU TYR ASP ALA GLU THR GLY ARG LYS SEQRES 4 A 293 ILE SER GLN LEU ASP TRP LYS ILE LYS ASN VAL ALA ILE SEQRES 5 A 293 LEU LYS GLY ASP ILE SER TRP ASP PRO TYR SER PHE LEU SEQRES 6 A 293 THR LEU ASN ALA ARG GLY TRP THR SER LEU ALA SER GLY SEQRES 7 A 293 SER GLY ASN MET ASP ASP TYR ASP TRP MET ASN GLU ASN SEQRES 8 A 293 GLN SER GLU TRP THR ASP HIS SER SER HIS PRO ALA THR SEQRES 9 A 293 ASN VAL ASN HIS ALA ASN GLU TYR ASP LEU ASN VAL LYS SEQRES 10 A 293 GLY TRP LEU LEU GLN ASP GLU ASN TYR LYS ALA GLY ILE SEQRES 11 A 293 THR ALA GLY TYR GLN GLU THR ARG PHE SER TRP THR ALA SEQRES 12 A 293 THR GLY GLY SER TYR SER TYR ASN ASN GLY ALA TYR THR SEQRES 13 A 293 GLY ASN PHE PRO LYS GLY VAL ARG VAL ILE GLY TYR ASN SEQRES 14 A 293 GLN ARG PHE SER MET PRO TYR ILE GLY LEU ALA GLY GLN SEQRES 15 A 293 TYR ARG ILE ASN ASP PHE GLU LEU ASN ALA LEU PHE LYS SEQRES 16 A 293 PHE SER ASP TRP VAL ARG ALA HIS ASP ASN ASP GLU HIS SEQRES 17 A 293 TYR MET ARG ASP LEU THR PHE ARG GLU LYS THR SER GLY SEQRES 18 A 293 SER ARG TYR TYR GLY THR VAL ILE ASN ALA GLY TYR TYR SEQRES 19 A 293 VAL THR PRO ASN ALA LYS VAL PHE ALA GLU PHE THR TYR SEQRES 20 A 293 SER LYS TYR ASP GLU GLY LYS GLY GLY THR GLN THR ILE SEQRES 21 A 293 ASP LYS ASN SER GLY ASP SER VAL SER ILE GLY GLY ASP SEQRES 22 A 293 ALA ALA GLY ILE SER ASN LYS ASN TYR THR VAL THR ALA SEQRES 23 A 293 GLY LEU GLN TYR ARG PHE GLY HET C8E A1293 9 HET C8E A1294 8 HET C8E A1295 12 HET C8E A1296 14 HET C8E A1297 14 HET C8E A1298 13 HET C8E A1299 13 HET C8E A1300 11 HET C8E A1301 5 HET C8E A1302 8 HET C8E A1303 12 HET C8E A1304 9 HET C8E A1305 8 HET C8E A1306 6 HET C8E A1307 9 HET C8E A1308 8 HET C8E A1309 7 HET C8E A1310 12 HET C8E A1311 12 HET C8E A1312 4 HET C8E A1313 6 HET C8E A1314 6 HET C8E A1315 6 HET SO4 A1316 5 HET SO4 A1317 5 HETNAM C8E (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE HETNAM SO4 SULFATE ION FORMUL 2 C8E 23(C16 H34 O5) FORMUL 25 SO4 2(O4 S 2-) FORMUL 27 HOH *200(H2 O) HELIX 1 1 MET A 210 ASP A 212 5 3 HELIX 2 2 GLY A 271 ASP A 273 5 3 SHEET 1 AA11 PHE A 14 TYR A 32 0 SHEET 2 AA11 ALA A 275 PHE A 292 -1 O GLY A 276 N MET A 30 SHEET 3 AA11 ALA A 239 TYR A 250 -1 O LYS A 240 N GLN A 289 SHEET 4 AA11 LEU A 213 THR A 236 -1 O TYR A 225 N LYS A 249 SHEET 5 AA11 PHE A 188 HIS A 208 -1 O GLU A 189 N GLY A 232 SHEET 6 AA11 ARG A 164 ILE A 185 -1 O GLY A 167 N GLU A 207 SHEET 7 AA11 TYR A 126 THR A 144 -1 O LYS A 127 N GLN A 182 SHEET 8 AA11 ASP A 97 GLN A 122 1 O ALA A 103 N THR A 144 SHEET 9 AA11 LEU A 65 SER A 74 -1 O THR A 66 N LYS A 117 SHEET 10 AA11 LYS A 39 TYR A 62 1 O LEU A 53 N THR A 73 SHEET 11 AA11 PHE A 14 TYR A 32 0 SITE 1 AC1 1 C8E A1303 SITE 1 AC2 5 GLY A 55 GLY A 71 ASN A 110 TYR A 112 SITE 2 AC2 5 ARG A 138 SITE 1 AC3 6 ALA A 18 LEU A 53 SER A 74 LEU A 288 SITE 2 AC3 6 TYR A 290 C8E A1307 SITE 1 AC4 3 TRP A 59 PRO A 61 TYR A 62 SITE 1 AC5 3 GLY A 133 ILE A 177 TRP A 199 SITE 1 AC6 4 THR A 20 ASN A 49 C8E A1306 C8E A1307 SITE 1 AC7 1 C8E A1315 SITE 1 AC8 3 TYR A 62 LEU A 120 C8E A1311 SITE 1 AC9 4 ARG A 70 GLY A 71 TYR A 112 C8E A1293 SITE 1 BC1 4 LEU A 179 ALA A 192 PHE A 194 THR A 227 SITE 1 BC2 4 GLU A 29 HIS A 208 GLU A 217 C8E A1314 SITE 1 BC3 3 VAL A 284 ALA A 286 C8E A1300 SITE 1 BC4 8 ALA A 18 THR A 20 VAL A 241 ALA A 286 SITE 2 BC4 8 GLY A 287 C8E A1296 C8E A1300 C8E A1313 SITE 1 BC5 1 PHE A 245 SITE 1 BC6 1 C8E A1312 SITE 1 BC7 4 ILE A 130 ILE A 177 GLY A 178 LEU A 179 SITE 1 BC8 5 PHE A 64 VAL A 116 TRP A 119 LEU A 120 SITE 2 BC8 5 C8E A1302 SITE 1 BC9 2 PHE A 14 C8E A1309 SITE 1 CC1 2 PHE A 242 C8E A1307 SITE 1 CC2 2 ASP A 86 C8E A1305 SITE 1 CC3 2 TYR A 126 C8E A1301 SITE 1 CC4 4 TYR A 62 SER A 63 ASN A 89 ASN A 91 SITE 1 CC5 6 ARG A 171 SER A 173 ARG A 201 HIS A 203 SITE 2 CC5 6 HOH A2155 HOH A2200 CRYST1 140.341 140.341 130.426 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007126 0.004114 0.000000 0.00000 SCALE2 0.000000 0.008228 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007667 0.00000