HEADER TRANSFERASE 15-FEB-10 2X65 TITLE CRYSTAL STRUCTURE OF T. MARITIMA GDP-MANNOSE PYROPHOSPHORYLASE IN TITLE 2 COMPLEX WITH MANNOSE-1-PHOSPHATE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: MANNOSE-1-PHOSPHATE GUANYLYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GDP-MANNOSE PYROPHOSPHORYLASE; COMPND 5 EC: 2.7.7.13; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 243274; SOURCE 4 STRAIN: MSB8; SOURCE 5 ATCC: 43589; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: ORIGAMI(DE30 PLYSS); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMH1; SOURCE 12 OTHER_DETAILS: DSM 3109 KEYWDS TRANSFERASE, NUCLEOTIDYLTRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.C.PELISSIER,S.LESLEY,P.KUHN,Y.BOURNE REVDAT 6 20-DEC-23 2X65 1 HETSYN SHEET REVDAT 5 29-JUL-20 2X65 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE REVDAT 4 13-JUL-11 2X65 1 VERSN REVDAT 3 01-SEP-10 2X65 1 JRNL REVDAT 2 07-JUL-10 2X65 1 JRNL REVDAT 1 23-JUN-10 2X65 0 JRNL AUTH M.C.PELISSIER,S.LESLEY,P.KUHN,Y.BOURNE JRNL TITL STRUCTURAL INSIGHTS INTO THE CATALYTIC MECHANISM OF JRNL TITL 2 BACTERIAL GUANOSINE-DIPHOSPHO-D-MANNOSE PYROPHOSPHORYLASE JRNL TITL 3 AND ITS REGULATION BY DIVALENT IONS. JRNL REF J.BIOL.CHEM. V. 285 27468 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 20573954 JRNL DOI 10.1074/JBC.M109.095182 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0088 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 65.21 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 42013 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1352 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3117 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.2870 REMARK 3 BIN FREE R VALUE SET COUNT : 90 REMARK 3 BIN FREE R VALUE : 0.3170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5418 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 79 REMARK 3 SOLVENT ATOMS : 162 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 36.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.39000 REMARK 3 B22 (A**2) : 1.65000 REMARK 3 B33 (A**2) : 1.63000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.25000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.216 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.180 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.148 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.709 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5624 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3958 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7613 ; 1.335 ; 1.990 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9690 ; 0.843 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 670 ; 6.163 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 252 ;37.241 ;24.683 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1043 ;15.593 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;14.372 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 841 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6026 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1078 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3348 ; 0.600 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1332 ; 0.135 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5466 ; 1.101 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2276 ; 1.754 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2145 ; 2.773 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 100 REMARK 3 ORIGIN FOR THE GROUP (A): -2.0161 25.0530 19.0343 REMARK 3 T TENSOR REMARK 3 T11: 0.1149 T22: 0.0596 REMARK 3 T33: 0.1428 T12: 0.0348 REMARK 3 T13: -0.0424 T23: 0.0476 REMARK 3 L TENSOR REMARK 3 L11: 5.4963 L22: 2.8405 REMARK 3 L33: 2.5158 L12: 0.8054 REMARK 3 L13: -1.0767 L23: -0.6925 REMARK 3 S TENSOR REMARK 3 S11: -0.0126 S12: 0.4995 S13: 0.6114 REMARK 3 S21: -0.1934 S22: 0.0285 S23: 0.2418 REMARK 3 S31: -0.2109 S32: -0.1043 S33: -0.0159 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 100 REMARK 3 ORIGIN FOR THE GROUP (A): -54.4324 12.5638 52.6432 REMARK 3 T TENSOR REMARK 3 T11: 0.2774 T22: 0.2519 REMARK 3 T33: 0.1012 T12: -0.1131 REMARK 3 T13: 0.0225 T23: -0.1452 REMARK 3 L TENSOR REMARK 3 L11: 4.9225 L22: 2.6083 REMARK 3 L33: 3.0675 L12: 1.3036 REMARK 3 L13: -1.6808 L23: -0.7835 REMARK 3 S TENSOR REMARK 3 S11: 0.4397 S12: -1.0908 S13: 0.6564 REMARK 3 S21: 0.7173 S22: -0.3367 S23: 0.1603 REMARK 3 S31: -0.4845 S32: 0.2656 S33: -0.1030 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 101 A 199 REMARK 3 ORIGIN FOR THE GROUP (A): 4.9253 6.2238 13.8927 REMARK 3 T TENSOR REMARK 3 T11: 0.1372 T22: 0.1696 REMARK 3 T33: 0.1573 T12: 0.0408 REMARK 3 T13: -0.0106 T23: -0.1201 REMARK 3 L TENSOR REMARK 3 L11: 3.0297 L22: 3.4396 REMARK 3 L33: 3.9874 L12: -0.7533 REMARK 3 L13: -0.6374 L23: 0.0755 REMARK 3 S TENSOR REMARK 3 S11: 0.0308 S12: 0.5944 S13: -0.6756 REMARK 3 S21: -0.4856 S22: -0.2291 S23: 0.2553 REMARK 3 S31: 0.4803 S32: 0.0089 S33: 0.1983 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 101 B 199 REMARK 3 ORIGIN FOR THE GROUP (A): -61.7780 -4.8898 43.7050 REMARK 3 T TENSOR REMARK 3 T11: 0.0832 T22: 0.0114 REMARK 3 T33: 0.1508 T12: -0.0189 REMARK 3 T13: 0.0057 T23: 0.0251 REMARK 3 L TENSOR REMARK 3 L11: 4.5735 L22: 4.2297 REMARK 3 L33: 2.6744 L12: 1.3794 REMARK 3 L13: -1.3279 L23: -0.6310 REMARK 3 S TENSOR REMARK 3 S11: -0.0665 S12: -0.1347 S13: -0.7747 REMARK 3 S21: 0.1039 S22: -0.0747 S23: 0.0182 REMARK 3 S31: 0.4288 S32: -0.0537 S33: 0.1412 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 200 A 334 REMARK 3 ORIGIN FOR THE GROUP (A): -10.5420 14.2505 18.2204 REMARK 3 T TENSOR REMARK 3 T11: 0.1443 T22: 0.1049 REMARK 3 T33: 0.1149 T12: 0.0049 REMARK 3 T13: -0.0512 T23: -0.0276 REMARK 3 L TENSOR REMARK 3 L11: 5.4901 L22: 0.5892 REMARK 3 L33: 1.7104 L12: 0.4892 REMARK 3 L13: -2.1730 L23: -0.2025 REMARK 3 S TENSOR REMARK 3 S11: 0.0877 S12: 0.6893 S13: 0.0220 REMARK 3 S21: -0.2533 S22: 0.0422 S23: 0.1681 REMARK 3 S31: -0.1297 S32: -0.2232 S33: -0.1299 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 200 B 334 REMARK 3 ORIGIN FOR THE GROUP (A): -45.9953 3.5931 46.1648 REMARK 3 T TENSOR REMARK 3 T11: 0.1253 T22: 0.1086 REMARK 3 T33: 0.0943 T12: -0.0309 REMARK 3 T13: -0.0555 T23: 0.0312 REMARK 3 L TENSOR REMARK 3 L11: 5.9876 L22: 1.7642 REMARK 3 L33: 1.8728 L12: 1.7574 REMARK 3 L13: -2.2999 L23: -0.9177 REMARK 3 S TENSOR REMARK 3 S11: 0.1910 S12: -0.7990 S13: -0.2869 REMARK 3 S21: 0.4156 S22: -0.2681 S23: -0.1447 REMARK 3 S31: -0.0595 S32: 0.3312 S33: 0.0771 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS. REMARK 4 REMARK 4 2X65 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1290042884. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JAN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43388 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 65.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.47000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2X5S REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35% (V/V) MPD REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 45.86900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -79.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, MET 1 TO VAL REMARK 400 ENGINEERED RESIDUE IN CHAIN A, VAL 261 TO LEU REMARK 400 ENGINEERED RESIDUE IN CHAIN B, MET 1 TO VAL REMARK 400 ENGINEERED RESIDUE IN CHAIN B, VAL 261 TO LEU REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 335 REMARK 465 SER A 336 REMARK 465 THR B 335 REMARK 465 SER B 336 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 29 75.28 -101.42 REMARK 500 ASN A 85 -175.60 69.97 REMARK 500 ASP A 133 -162.49 59.04 REMARK 500 GLU A 208 82.64 -151.22 REMARK 500 VAL A 242 -51.38 -125.07 REMARK 500 HIS A 293 -89.14 -109.16 REMARK 500 PHE A 333 55.74 -119.96 REMARK 500 ALA B 8 73.98 -117.92 REMARK 500 PRO B 24 -177.39 -67.59 REMARK 500 ASN B 85 -165.61 68.30 REMARK 500 ASP B 133 -170.67 68.18 REMARK 500 HIS B 293 -86.10 -114.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 M1P A 600 O1P REMARK 620 2 HOH A2023 O 159.9 REMARK 620 3 HOH A2061 O 85.0 84.6 REMARK 620 4 HOH A2062 O 110.2 88.6 99.6 REMARK 620 5 HOH A2063 O 84.7 76.4 78.6 164.9 REMARK 620 6 HOH A2064 O 96.2 87.3 158.5 100.1 80.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 M1P B 600 O3P REMARK 620 2 HOH B2031 O 160.9 REMARK 620 3 HOH B2087 O 71.1 103.1 REMARK 620 4 HOH B2088 O 80.6 107.6 149.1 REMARK 620 5 HOH B2089 O 86.9 109.3 73.6 93.2 REMARK 620 N 1 2 3 4 REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 7-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 8-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 700 THE SHEETS PRESENTED AS "BA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 7-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 8-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2X5Z RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF T. MARITIMA GDP-MANNOSE PYROPHOSPHORYLASE IN REMARK 900 COMPLEX WITH GDP- MANNOSE. REMARK 900 RELATED ID: 2X5S RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF T. MARITIMA GDP-MANNOSE PYROPHOSPHORYLASE IN REMARK 900 APO STATE. REMARK 900 RELATED ID: 2X60 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF T. MARITIMA GDP-MANNOSE PYROPHOSPHORYLASE IN REMARK 900 COMPLEX WITH GTP. DBREF 2X65 A 1 336 UNP Q9X0C3 Q9X0C3_THEMA 1 336 DBREF 2X65 B 1 336 UNP Q9X0C3 Q9X0C3_THEMA 1 336 SEQADV 2X65 VAL A 1 UNP Q9X0C3 MET 1 ENGINEERED MUTATION SEQADV 2X65 LEU A 261 UNP Q9X0C3 VAL 261 ENGINEERED MUTATION SEQADV 2X65 VAL B 1 UNP Q9X0C3 MET 1 ENGINEERED MUTATION SEQADV 2X65 LEU B 261 UNP Q9X0C3 VAL 261 ENGINEERED MUTATION SEQRES 1 A 336 VAL MET LYS ALA LEU ILE LEU ALA GLY GLY SER GLY GLU SEQRES 2 A 336 ARG PHE TRP PRO LEU SER THR PRO GLU THR PRO LYS GLN SEQRES 3 A 336 PHE LEU LYS LEU PHE GLY ASN LYS SER LEU MET ARG TRP SEQRES 4 A 336 THR PHE GLU ARG VAL LEU GLU GLU MET ASP PRO LYS ASP SEQRES 5 A 336 VAL ILE VAL VAL THR HIS LYS ASP TYR VAL GLU ARG THR SEQRES 6 A 336 LYS LYS GLU LEU PRO GLU LEU PRO ASP GLU ASN ILE ILE SEQRES 7 A 336 ALA GLU PRO MET LYS LYS ASN THR ALA PRO ALA CYS PHE SEQRES 8 A 336 ILE GLY THR LYS LEU ALA ASP ASP ASP GLU PRO VAL LEU SEQRES 9 A 336 VAL LEU PRO ALA ASP HIS ARG ILE PRO ASP THR LYS LYS SEQRES 10 A 336 PHE TRP LYS THR VAL LYS LYS ALA LEU ASP ALA LEU GLU SEQRES 11 A 336 LYS TYR ASP GLY LEU PHE THR PHE GLY ILE VAL PRO THR SEQRES 12 A 336 ARG PRO GLU THR GLY TYR GLY TYR ILE GLU ILE GLY GLU SEQRES 13 A 336 GLU LEU GLU GLU GLY VAL HIS LYS VAL ALA GLN PHE ARG SEQRES 14 A 336 GLU LYS PRO ASP LEU GLU THR ALA LYS LYS PHE VAL GLU SEQRES 15 A 336 SER GLY ARG PHE LEU TRP ASN SER GLY MET PHE LEU TRP SEQRES 16 A 336 LYS ALA ARG GLU PHE ILE GLU GLU VAL LYS VAL CYS GLU SEQRES 17 A 336 PRO SER ILE TYR GLU ASN LEU LYS ASP VAL ASP PRO ARG SEQRES 18 A 336 ASN PHE GLU GLU LEU LYS LYS ALA TYR GLU LYS VAL PRO SEQRES 19 A 336 SER ILE SER VAL ASP TYR ALA VAL MET GLU LYS SER LYS SEQRES 20 A 336 LYS VAL ARG VAL VAL LYS ALA ASP PHE GLU TRP SER ASP SEQRES 21 A 336 LEU GLY ASN TRP SER SER VAL ARG GLU ILE GLU GLY TYR SEQRES 22 A 336 THR GLU GLU SER ASP GLU VAL ILE LEU VAL ASP SER ASP SEQRES 23 A 336 ARG VAL PHE VAL LYS THR HIS ASN LYS PRO ILE ALA VAL SEQRES 24 A 336 VAL GLY LEU SER ASP VAL ILE VAL ILE ASP THR PRO ASN SEQRES 25 A 336 GLY ILE LEU ILE CYS LYS GLU GLU TYR ALA GLN LYS VAL SEQRES 26 A 336 ARG GLU VAL VAL LYS LYS LEU PHE ARG THR SER SEQRES 1 B 336 VAL MET LYS ALA LEU ILE LEU ALA GLY GLY SER GLY GLU SEQRES 2 B 336 ARG PHE TRP PRO LEU SER THR PRO GLU THR PRO LYS GLN SEQRES 3 B 336 PHE LEU LYS LEU PHE GLY ASN LYS SER LEU MET ARG TRP SEQRES 4 B 336 THR PHE GLU ARG VAL LEU GLU GLU MET ASP PRO LYS ASP SEQRES 5 B 336 VAL ILE VAL VAL THR HIS LYS ASP TYR VAL GLU ARG THR SEQRES 6 B 336 LYS LYS GLU LEU PRO GLU LEU PRO ASP GLU ASN ILE ILE SEQRES 7 B 336 ALA GLU PRO MET LYS LYS ASN THR ALA PRO ALA CYS PHE SEQRES 8 B 336 ILE GLY THR LYS LEU ALA ASP ASP ASP GLU PRO VAL LEU SEQRES 9 B 336 VAL LEU PRO ALA ASP HIS ARG ILE PRO ASP THR LYS LYS SEQRES 10 B 336 PHE TRP LYS THR VAL LYS LYS ALA LEU ASP ALA LEU GLU SEQRES 11 B 336 LYS TYR ASP GLY LEU PHE THR PHE GLY ILE VAL PRO THR SEQRES 12 B 336 ARG PRO GLU THR GLY TYR GLY TYR ILE GLU ILE GLY GLU SEQRES 13 B 336 GLU LEU GLU GLU GLY VAL HIS LYS VAL ALA GLN PHE ARG SEQRES 14 B 336 GLU LYS PRO ASP LEU GLU THR ALA LYS LYS PHE VAL GLU SEQRES 15 B 336 SER GLY ARG PHE LEU TRP ASN SER GLY MET PHE LEU TRP SEQRES 16 B 336 LYS ALA ARG GLU PHE ILE GLU GLU VAL LYS VAL CYS GLU SEQRES 17 B 336 PRO SER ILE TYR GLU ASN LEU LYS ASP VAL ASP PRO ARG SEQRES 18 B 336 ASN PHE GLU GLU LEU LYS LYS ALA TYR GLU LYS VAL PRO SEQRES 19 B 336 SER ILE SER VAL ASP TYR ALA VAL MET GLU LYS SER LYS SEQRES 20 B 336 LYS VAL ARG VAL VAL LYS ALA ASP PHE GLU TRP SER ASP SEQRES 21 B 336 LEU GLY ASN TRP SER SER VAL ARG GLU ILE GLU GLY TYR SEQRES 22 B 336 THR GLU GLU SER ASP GLU VAL ILE LEU VAL ASP SER ASP SEQRES 23 B 336 ARG VAL PHE VAL LYS THR HIS ASN LYS PRO ILE ALA VAL SEQRES 24 B 336 VAL GLY LEU SER ASP VAL ILE VAL ILE ASP THR PRO ASN SEQRES 25 B 336 GLY ILE LEU ILE CYS LYS GLU GLU TYR ALA GLN LYS VAL SEQRES 26 B 336 ARG GLU VAL VAL LYS LYS LEU PHE ARG THR SER HET M1P A 600 16 HET MG A 601 1 HET MRD A1335 8 HET MRD A1336 8 HET MPD A1337 8 HET MPD A1338 8 HET MPD A1339 8 HET M1P B 600 16 HET MG B 601 1 HET PO4 B 602 5 HETNAM M1P 1-O-PHOSPHONO-ALPHA-D-MANNOPYRANOSE HETNAM MG MAGNESIUM ION HETNAM MRD (4R)-2-METHYLPENTANE-2,4-DIOL HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM PO4 PHOSPHATE ION HETSYN M1P ALPHA-D-MANNOSE 1-PHOSPHATE; 1-O-PHOSPHONO-ALPHA-D- HETSYN 2 M1P MANNOSE; 1-O-PHOSPHONO-D-MANNOSE; 1-O-PHOSPHONO- HETSYN 3 M1P MANNOSE FORMUL 3 M1P 2(C6 H13 O9 P) FORMUL 4 MG 2(MG 2+) FORMUL 5 MRD 2(C6 H14 O2) FORMUL 7 MPD 3(C6 H14 O2) FORMUL 12 PO4 O4 P 3- FORMUL 13 HOH *162(H2 O) HELIX 1 1 GLY A 12 TRP A 16 5 5 HELIX 2 2 LYS A 25 LEU A 28 5 4 HELIX 3 3 SER A 35 GLU A 46 1 12 HELIX 4 4 ASP A 49 LYS A 51 5 3 HELIX 5 5 TYR A 61 LEU A 69 1 9 HELIX 6 6 PRO A 73 GLU A 75 5 3 HELIX 7 7 ASN A 85 LYS A 95 1 11 HELIX 8 8 ASP A 114 ASP A 133 1 20 HELIX 9 9 ASP A 173 GLY A 184 1 12 HELIX 10 10 ALA A 197 GLU A 208 1 12 HELIX 11 11 GLU A 208 LYS A 216 1 9 HELIX 12 12 ASN A 222 VAL A 233 1 12 HELIX 13 13 SER A 237 VAL A 242 1 6 HELIX 14 14 ASN A 263 GLY A 272 1 10 HELIX 15 15 GLU A 320 GLN A 323 5 4 HELIX 16 16 LYS A 324 PHE A 333 1 10 HELIX 17 17 GLY B 12 TRP B 16 5 5 HELIX 18 18 PRO B 24 LEU B 28 5 5 HELIX 19 19 SER B 35 LEU B 45 1 11 HELIX 20 20 ASP B 49 LYS B 51 5 3 HELIX 21 21 TYR B 61 LEU B 69 1 9 HELIX 22 22 PRO B 73 GLU B 75 5 3 HELIX 23 23 ASN B 85 LYS B 95 1 11 HELIX 24 24 ASP B 114 ASP B 133 1 20 HELIX 25 25 ASP B 173 GLY B 184 1 12 HELIX 26 26 ALA B 197 GLU B 208 1 12 HELIX 27 27 GLU B 208 LYS B 216 1 9 HELIX 28 28 ASN B 222 LYS B 232 1 11 HELIX 29 29 SER B 237 VAL B 242 1 6 HELIX 30 30 ASN B 263 GLY B 272 1 10 HELIX 31 31 GLU B 320 GLN B 323 5 4 HELIX 32 32 LYS B 324 PHE B 333 1 10 SHEET 1 AA 8 LYS A 3 LEU A 7 0 SHEET 2 AA 8 PRO A 102 PRO A 107 1 O PRO A 102 N LYS A 3 SHEET 3 AA 8 PHE A 186 LYS A 196 -1 O PHE A 193 N VAL A 105 SHEET 4 AA 8 GLY A 150 GLU A 159 -1 O GLY A 150 N ASN A 189 SHEET 5 AA 8 VAL A 162 GLU A 170 -1 O VAL A 162 N LEU A 158 SHEET 6 AA 8 VAL A 249 LYS A 253 -1 O VAL A 249 N VAL A 165 SHEET 7 AA 8 LEU A 135 ILE A 140 1 O LEU A 135 N ARG A 250 SHEET 8 AA 8 LYS A 3 LEU A 7 1 O LYS A 3 N LEU A 104 SHEET 1 AB 5 VAL A 280 VAL A 283 0 SHEET 2 AB 5 ILE A 297 VAL A 300 1 O ILE A 297 N ILE A 281 SHEET 3 AB 5 GLY B 313 LYS B 318 1 O ILE B 314 N ALA A 298 SHEET 4 AB 5 VAL B 305 THR B 310 -1 O ILE B 306 N CYS B 317 SHEET 5 AB 5 VAL B 288 LYS B 291 1 O PHE B 289 N VAL B 307 SHEET 1 AC 5 VAL A 288 LYS A 291 0 SHEET 2 AC 5 VAL A 305 THR A 310 1 O VAL A 305 N PHE A 289 SHEET 3 AC 5 GLY A 313 LYS A 318 -1 O GLY A 313 N THR A 310 SHEET 4 AC 5 ILE B 297 VAL B 300 1 O ALA B 298 N ILE A 316 SHEET 5 AC 5 VAL B 280 VAL B 283 1 O ILE B 281 N VAL B 299 SHEET 1 BA 8 LYS B 3 ALA B 8 0 SHEET 2 BA 8 PRO B 102 PRO B 107 1 O PRO B 102 N LYS B 3 SHEET 3 BA 8 PHE B 186 LYS B 196 -1 O PHE B 193 N VAL B 105 SHEET 4 BA 8 GLY B 150 GLU B 159 -1 O GLY B 150 N ASN B 189 SHEET 5 BA 8 VAL B 162 GLU B 170 -1 O VAL B 162 N GLU B 159 SHEET 6 BA 8 VAL B 249 LYS B 253 -1 O VAL B 249 N VAL B 165 SHEET 7 BA 8 LEU B 135 ILE B 140 1 O LEU B 135 N ARG B 250 SHEET 8 BA 8 LYS B 3 ALA B 8 1 O LYS B 3 N LEU B 104 LINK O1P M1P A 600 MG MG A 601 1555 1555 2.02 LINK MG MG A 601 O HOH A2023 1555 1555 2.33 LINK MG MG A 601 O HOH A2061 1555 1555 2.10 LINK MG MG A 601 O HOH A2062 1555 1555 1.87 LINK MG MG A 601 O HOH A2063 1555 1555 2.41 LINK MG MG A 601 O HOH A2064 1555 1555 2.24 LINK O3P M1P B 600 MG MG B 601 1555 1555 2.16 LINK MG MG B 601 O HOH B2031 1555 1555 2.07 LINK MG MG B 601 O HOH B2087 1555 1555 2.15 LINK MG MG B 601 O HOH B2088 1555 1555 2.21 LINK MG MG B 601 O HOH B2089 1555 1555 2.11 CISPEP 1 TRP A 16 PRO A 17 0 3.90 CISPEP 2 TRP B 16 PRO B 17 0 1.70 CRYST1 63.933 91.738 69.730 90.00 110.75 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015641 0.000000 0.005926 0.00000 SCALE2 0.000000 0.010901 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015336 0.00000