HEADER IMMUNE SYSTEM 15-FEB-10 2X69 TITLE X-RAY STRUCTURE OF MACROPHAGE INFLAMMATORY PROTEIN-1 ALPHA POLYMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: C-C MOTIF CHEMOKINE 3; COMPND 3 CHAIN: A, B, C, D, E; COMPND 4 FRAGMENT: RESIDUES 23-92; COMPND 5 SYNONYM: SMALL-INDUCIBLE CYTOKINE A3, MACROPHAGE INFLAMMATORY PROTEIN COMPND 6 1-ALPHA, TONSILLAR LYMPHOCYTE LD78 ALPHA PROTEIN, G0/G1 SWITCH COMPND 7 REGULATORY PROTEIN 19-1, SIS- BETA, PAT 464.1, MIP-1-ALPHA(4-69), COMPND 8 LD78-ALPHA(4-69), MIP- 1-ALPHA; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_COMMON: HUMAN; SOURCE 5 ORGANISM_TAXID: 9606 KEYWDS IMMUNE SYSTEM, INFLAMMATORY RESPONSE, CYTOKINE, CHEMOTAXIS EXPDTA X-RAY DIFFRACTION AUTHOR Q.GUO,M.REN,W.TANG REVDAT 3 06-NOV-24 2X69 1 REMARK REVDAT 2 26-JAN-11 2X69 1 KEYWDS AUTHOR JRNL REVDAT 1 03-NOV-10 2X69 0 JRNL AUTH M.REN,Q.GUO,L.GUO,M.LENZ,F.QIAN,R.R.KOENEN,H.XU, JRNL AUTH 2 A.B.SCHILLING,C.WEBER,R.D.YE,A.R.DINNER,W.TANG JRNL TITL POLYMERIZATION OF MIP-1 CHEMOKINE (CCL3 AND CCL4) AND JRNL TITL 2 CLEARANCE OF MIP-1 BY INSULIN-DEGRADING ENZYME. JRNL REF EMBO J. V. 29 3952 2010 JRNL REFN ISSN 0261-4189 JRNL PMID 20959807 JRNL DOI 10.1038/EMBOJ.2010.256 REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 157.22 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 21083 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.235 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1133 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.72 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1504 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.3140 REMARK 3 BIN FREE R VALUE SET COUNT : 95 REMARK 3 BIN FREE R VALUE : 0.3760 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2605 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 13 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 52.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.08000 REMARK 3 B22 (A**2) : 0.08000 REMARK 3 B33 (A**2) : -0.12000 REMARK 3 B12 (A**2) : 0.04000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.312 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.261 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.204 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.787 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.933 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.907 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2675 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3640 ; 2.099 ; 1.946 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 325 ; 7.536 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 125 ;37.533 ;24.400 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 430 ;22.743 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;17.210 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 400 ; 0.159 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2045 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1660 ; 1.044 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2705 ; 2.045 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1015 ; 2.996 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 935 ; 5.137 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2X69 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1290042924. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-NOV-01 REMARK 200 TEMPERATURE (KELVIN) : 287 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22235 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.60 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 40.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.00 REMARK 200 R MERGE FOR SHELL (I) : 0.46000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.23000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 25.61500 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 51.23000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 25.61500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 51.23000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 25.61500 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 51.23000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 25.61500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -90.77050 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 157.21912 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 SER A 2 REMARK 465 LEU A 3 REMARK 465 ALA A 70 REMARK 465 ALA B 1 REMARK 465 SER B 2 REMARK 465 LEU B 3 REMARK 465 ALA B 70 REMARK 465 ALA C 1 REMARK 465 SER C 2 REMARK 465 LEU C 3 REMARK 465 ALA C 70 REMARK 465 ALA D 1 REMARK 465 SER D 2 REMARK 465 LEU D 3 REMARK 465 ALA D 70 REMARK 465 ALA E 1 REMARK 465 SER E 2 REMARK 465 LEU E 3 REMARK 465 ALA E 70 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER B 32 O HOH B 2003 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 53 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 LEU E 68 CA - CB - CG ANGL. DEV. = -14.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 6 62.66 -69.27 REMARK 500 PRO A 54 -6.93 -59.42 REMARK 500 LEU A 68 48.36 -74.48 REMARK 500 LEU B 68 46.58 -89.96 REMARK 500 ALA C 5 139.40 154.20 REMARK 500 ASP C 6 53.29 -67.50 REMARK 500 ALA D 5 177.35 -59.96 REMARK 500 ASN D 23 11.87 -69.23 REMARK 500 SER D 36 -55.42 -24.21 REMARK 500 SER D 47 14.94 98.51 REMARK 500 LEU D 68 23.19 -79.47 REMARK 500 THR E 16 154.05 -48.73 REMARK 500 PRO E 21 123.66 -39.54 REMARK 500 ASP E 27 166.43 178.02 REMARK 500 SER E 47 9.91 96.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1B50 RELATED DB: PDB REMARK 900 NMR STRUCTURE OF HUMAN MIP-1A D26A, 10 STRUCTURES REMARK 900 RELATED ID: 1B53 RELATED DB: PDB REMARK 900 NMR STRUCTURE OF HUMAN MIP-1A D26A, MINIMIZED AVERAGE STRUCTURE REMARK 900 RELATED ID: 2X6G RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF MACROPHAGE INFLAMMATORY PROTEIN-1 ALPHA (D27A) DBREF 2X69 A 1 70 UNP P10147 CCL3_HUMAN 23 92 DBREF 2X69 B 1 70 UNP P10147 CCL3_HUMAN 23 92 DBREF 2X69 C 1 70 UNP P10147 CCL3_HUMAN 23 92 DBREF 2X69 D 1 70 UNP P10147 CCL3_HUMAN 23 92 DBREF 2X69 E 1 70 UNP P10147 CCL3_HUMAN 23 92 SEQRES 1 A 70 ALA SER LEU ALA ALA ASP THR PRO THR ALA CYS CYS PHE SEQRES 2 A 70 SER TYR THR SER ARG GLN ILE PRO GLN ASN PHE ILE ALA SEQRES 3 A 70 ASP TYR PHE GLU THR SER SER GLN CYS SER LYS PRO GLY SEQRES 4 A 70 VAL ILE PHE LEU THR LYS ARG SER ARG GLN VAL CYS ALA SEQRES 5 A 70 ASP PRO SER GLU GLU TRP VAL GLN LYS TYR VAL SER ASP SEQRES 6 A 70 LEU GLU LEU SER ALA SEQRES 1 B 70 ALA SER LEU ALA ALA ASP THR PRO THR ALA CYS CYS PHE SEQRES 2 B 70 SER TYR THR SER ARG GLN ILE PRO GLN ASN PHE ILE ALA SEQRES 3 B 70 ASP TYR PHE GLU THR SER SER GLN CYS SER LYS PRO GLY SEQRES 4 B 70 VAL ILE PHE LEU THR LYS ARG SER ARG GLN VAL CYS ALA SEQRES 5 B 70 ASP PRO SER GLU GLU TRP VAL GLN LYS TYR VAL SER ASP SEQRES 6 B 70 LEU GLU LEU SER ALA SEQRES 1 C 70 ALA SER LEU ALA ALA ASP THR PRO THR ALA CYS CYS PHE SEQRES 2 C 70 SER TYR THR SER ARG GLN ILE PRO GLN ASN PHE ILE ALA SEQRES 3 C 70 ASP TYR PHE GLU THR SER SER GLN CYS SER LYS PRO GLY SEQRES 4 C 70 VAL ILE PHE LEU THR LYS ARG SER ARG GLN VAL CYS ALA SEQRES 5 C 70 ASP PRO SER GLU GLU TRP VAL GLN LYS TYR VAL SER ASP SEQRES 6 C 70 LEU GLU LEU SER ALA SEQRES 1 D 70 ALA SER LEU ALA ALA ASP THR PRO THR ALA CYS CYS PHE SEQRES 2 D 70 SER TYR THR SER ARG GLN ILE PRO GLN ASN PHE ILE ALA SEQRES 3 D 70 ASP TYR PHE GLU THR SER SER GLN CYS SER LYS PRO GLY SEQRES 4 D 70 VAL ILE PHE LEU THR LYS ARG SER ARG GLN VAL CYS ALA SEQRES 5 D 70 ASP PRO SER GLU GLU TRP VAL GLN LYS TYR VAL SER ASP SEQRES 6 D 70 LEU GLU LEU SER ALA SEQRES 1 E 70 ALA SER LEU ALA ALA ASP THR PRO THR ALA CYS CYS PHE SEQRES 2 E 70 SER TYR THR SER ARG GLN ILE PRO GLN ASN PHE ILE ALA SEQRES 3 E 70 ASP TYR PHE GLU THR SER SER GLN CYS SER LYS PRO GLY SEQRES 4 E 70 VAL ILE PHE LEU THR LYS ARG SER ARG GLN VAL CYS ALA SEQRES 5 E 70 ASP PRO SER GLU GLU TRP VAL GLN LYS TYR VAL SER ASP SEQRES 6 E 70 LEU GLU LEU SER ALA FORMUL 6 HOH *13(H2 O) HELIX 1 1 PRO A 21 ASN A 23 5 3 HELIX 2 2 GLU A 56 LEU A 68 1 13 HELIX 3 3 PRO B 21 ASN B 23 5 3 HELIX 4 4 GLU B 56 LEU B 68 1 13 HELIX 5 5 PRO C 21 ASN C 23 5 3 HELIX 6 6 GLU C 56 SER C 69 1 14 HELIX 7 7 PRO D 21 ASN D 23 5 3 HELIX 8 8 GLU D 56 LEU D 68 1 13 HELIX 9 9 GLU E 56 SER E 69 1 14 SHEET 1 AA 3 ILE A 25 GLU A 30 0 SHEET 2 AA 3 VAL A 40 THR A 44 -1 O ILE A 41 N PHE A 29 SHEET 3 AA 3 GLN A 49 ALA A 52 -1 O VAL A 50 N PHE A 42 SHEET 1 BA 2 THR B 9 CYS B 11 0 SHEET 2 BA 2 THR C 9 CYS C 11 -1 O THR C 9 N CYS B 11 SHEET 1 BB 3 ILE B 25 GLU B 30 0 SHEET 2 BB 3 VAL B 40 THR B 44 -1 O ILE B 41 N PHE B 29 SHEET 3 BB 3 GLN B 49 ALA B 52 -1 O VAL B 50 N PHE B 42 SHEET 1 CA 3 ILE C 25 GLU C 30 0 SHEET 2 CA 3 VAL C 40 THR C 44 -1 O ILE C 41 N PHE C 29 SHEET 3 CA 3 GLN C 49 ALA C 52 -1 O VAL C 50 N PHE C 42 SHEET 1 DA 2 THR D 9 CYS D 11 0 SHEET 2 DA 2 THR E 9 CYS E 11 -1 O THR E 9 N CYS D 11 SHEET 1 DB 3 ILE D 25 GLU D 30 0 SHEET 2 DB 3 VAL D 40 THR D 44 -1 O ILE D 41 N PHE D 29 SHEET 3 DB 3 GLN D 49 ALA D 52 -1 O VAL D 50 N PHE D 42 SHEET 1 EA 3 ILE E 25 GLU E 30 0 SHEET 2 EA 3 VAL E 40 THR E 44 -1 O ILE E 41 N PHE E 29 SHEET 3 EA 3 GLN E 49 ALA E 52 -1 O VAL E 50 N PHE E 42 SSBOND 1 CYS A 11 CYS A 35 1555 1555 2.13 SSBOND 2 CYS A 12 CYS A 51 1555 1555 2.18 SSBOND 3 CYS B 11 CYS B 35 1555 1555 2.14 SSBOND 4 CYS B 12 CYS B 51 1555 1555 2.13 SSBOND 5 CYS C 11 CYS C 35 1555 1555 2.14 SSBOND 6 CYS C 12 CYS C 51 1555 1555 2.15 SSBOND 7 CYS D 11 CYS D 35 1555 1555 2.12 SSBOND 8 CYS D 12 CYS D 51 1555 1555 2.11 SSBOND 9 CYS E 11 CYS E 35 1555 1555 2.12 SSBOND 10 CYS E 12 CYS E 51 1555 1555 2.12 CISPEP 1 ALA A 5 ASP A 6 0 0.85 CISPEP 2 ALA B 5 ASP B 6 0 9.54 CISPEP 3 ALA C 5 ASP C 6 0 18.10 CISPEP 4 ALA D 5 ASP D 6 0 1.79 CISPEP 5 ALA E 5 ASP E 6 0 25.37 CRYST1 181.541 181.541 76.845 90.00 90.00 120.00 P 62 2 2 60 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005508 0.003180 0.000000 0.00000 SCALE2 0.000000 0.006361 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013013 0.00000