HEADER VIRAL PROTEIN 22-FEB-10 2X6W TITLE TAILSPIKE PROTEIN MUTANT E372Q OF E.COLI BACTERIOPHAGE HK620 IN TITLE 2 COMPLEX WITH HEXASACCHARIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TAIL SPIKE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 111-710; COMPND 5 SYNONYM: TAILSPIKE PROTEIN HK620; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE HK620; SOURCE 3 ORGANISM_TAXID: 155148; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET11D KEYWDS VIRAL PROTEIN, BETA-HELIX, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR N.K.LORENZEN,J.J.MUELLER,U.HEINEMANN,R.SECKLER,S.BARBIRZ REVDAT 8 20-DEC-23 2X6W 1 HETSYN LINK REVDAT 7 29-JUL-20 2X6W 1 COMPND REMARK HETNAM LINK REVDAT 7 2 1 SITE ATOM REVDAT 6 06-FEB-19 2X6W 1 REMARK REVDAT 5 30-JAN-19 2X6W 1 REMARK REVDAT 4 12-JUL-17 2X6W 1 REVDAT 3 05-FEB-14 2X6W 1 COMPND JRNL REMARK VERSN REVDAT 2 16-MAR-11 2X6W 1 REMARK HET LINK HETATM REVDAT 2 2 1 ANISOU CONECT MASTER REVDAT 1 02-MAR-11 2X6W 0 JRNL AUTH N.K.BROEKER,U.GOHLKE,J.J.MULLER,C.UETRECHT,U.HEINEMANN, JRNL AUTH 2 R.SECKLER,S.BARBIRZ JRNL TITL SINGLE AMINO ACID EXCHANGE IN BACTERIOPHAGE HK620 TAILSPIKE JRNL TITL 2 PROTEIN RESULTS IN THOUSAND-FOLD INCREASE OF ITS JRNL TITL 3 OLIGOSACCHARIDE AFFINITY. JRNL REF GLYCOBIOLOGY V. 23 59 2013 JRNL REFN ISSN 0959-6658 JRNL PMID 22923442 JRNL DOI 10.1093/GLYCOB/CWS126 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.BARBIRZ,J.J.MULLER,C.UETRECHT,A.J.CLARK,U.HEINEMANN, REMARK 1 AUTH 2 R.SECKLER REMARK 1 TITL CRYSTAL STRUCTURE OF ESCHERICHIA COLI PHAGE HK620 TAILSPIKE: REMARK 1 TITL 2 PODOVIRAL TAILSPIKE ENDOGLYCOSIDASE MODULES ARE REMARK 1 TITL 3 EVOLUTIONARILY RELATED. REMARK 1 REF MOL.MICROBIOL. V. 69 303 2008 REMARK 1 REFN ISSN 0950-382X REMARK 1 PMID 18547389 REMARK 1 DOI 10.1111/J.1365-2958.2008.06311.X REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0108 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.44 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 114674 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.124 REMARK 3 R VALUE (WORKING SET) : 0.123 REMARK 3 FREE R VALUE : 0.156 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6078 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.39 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7106 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.26 REMARK 3 BIN R VALUE (WORKING SET) : 0.1820 REMARK 3 BIN FREE R VALUE SET COUNT : 404 REMARK 3 BIN FREE R VALUE : 0.2240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4525 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 98 REMARK 3 SOLVENT ATOMS : 687 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 10.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.69000 REMARK 3 B22 (A**2) : 0.69000 REMARK 3 B33 (A**2) : -1.04000 REMARK 3 B12 (A**2) : 0.35000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.049 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.047 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.029 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.565 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.980 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.971 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4872 ; 0.011 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 3107 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6640 ; 1.452 ; 1.947 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7532 ; 1.170 ; 3.013 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 604 ; 7.052 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 231 ;35.822 ;24.286 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 693 ;10.956 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;15.907 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 762 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5506 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1026 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3012 ; 1.705 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1248 ; 0.543 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4880 ; 2.460 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1860 ; 3.694 ; 4.500 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1760 ; 4.903 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 7978 ; 1.323 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY. REMARK 4 REMARK 4 2X6W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1290042439. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : SI-111 CRYSTAL REMARK 200 OPTICS : GLAS MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 114674 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 36.440 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 71.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.34000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2VJI REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOR DIFFUSION, HANGING DROP:PROTEIN REMARK 280 CONCENTRATION 8MG/ML. BUFFER: 40MM TRIS, PH7.8,2 MM EDTA,0.2M REMARK 280 NACL.RERVOIR: 100MM TRIS PH8.5,3.5 MNA-FORMIATE. DROPLET 1.5:1.5 REMARK 280 MICRO LITER. 0.3 MICRO LITER 33MM HEXASACCHARIDE.TEMPERATURE 20 REMARK 280 DEGREE CELSIUS., TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 30170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 48190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -90.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 37.26500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -64.54487 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 74.53000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2143 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2351 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, GLU 373 TO GLN REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 110 REMARK 465 PRO A 111 REMARK 465 ASP A 112 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 113 N CA CB CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 678 O HOH A 2643 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2562 O HOH A 2670 3655 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 303 67.48 62.63 REMARK 500 ASP A 339 148.12 -175.76 REMARK 500 ASP A 441 68.67 64.08 REMARK 500 MET A 523 -73.73 -85.93 REMARK 500 THR A 530 -115.21 -119.94 REMARK 500 THR A 613 -73.74 -113.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2189 DISTANCE = 5.81 ANGSTROMS REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 BOTH NAG AND NDG EXIST DUE TO MUTAROTATION. REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 712 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 211 O REMARK 620 2 HOH A2141 O 96.0 REMARK 620 3 HOH A2142 O 78.3 86.1 REMARK 620 4 HOH A2195 O 89.5 93.1 167.6 REMARK 620 5 RAM B 6 O2 163.5 99.0 109.5 82.8 REMARK 620 6 RAM B 6 O3 97.0 160.2 82.1 101.8 70.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 710 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 339 OD2 REMARK 620 2 HOH A2328 O 86.4 REMARK 620 3 HOH A2375 O 105.4 94.7 REMARK 620 4 HOH A2427 O 99.5 99.1 152.1 REMARK 620 5 HOH A2684 O 163.2 100.0 89.7 64.2 REMARK 620 6 NDG B 1 O1 80.0 158.5 73.2 99.5 97.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 711 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 339 OD1 REMARK 620 2 HIS A 340 O 86.3 REMARK 620 3 SER A 341 OG 121.2 67.0 REMARK 620 4 HOH A2362 O 100.5 88.5 128.3 REMARK 620 5 NDG B 1 O1 85.3 158.0 100.5 113.0 REMARK 620 6 NAG B 3 O1 115.1 144.6 77.6 113.0 31.1 REMARK 620 N 1 2 3 4 5 REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2X85 RELATED DB: PDB REMARK 900 TAILSPIKE PROTEIN OF E. COLI BACTERIOPHAGE HK620 IN COMPLEX WITH REMARK 900 HEXASACCHARIDE REMARK 900 RELATED ID: 2X6Y RELATED DB: PDB REMARK 900 TAILSPIKE PROTEIN MUTANT D339A OF E.COLI BACTERIOPHAGE HK620 IN REMARK 900 COMPLEX WITH HEXASACCHARIDE REMARK 900 RELATED ID: 2VJI RELATED DB: PDB REMARK 900 TAILSPIKE PROTEIN OF E.COLI BACTERIOPHAGE HK620 REMARK 900 RELATED ID: 2X6X RELATED DB: PDB REMARK 900 TAILSPIKE PROTEIN MUTANT D339N OF E.COLI BACTERIOPHAGE HK620 IN REMARK 900 COMPLEX WITH HEXASACCHARIDE REMARK 900 RELATED ID: 2VJJ RELATED DB: PDB REMARK 900 TAILSPIKE PROTEIN OF E.COLI BACTERIOPHAGE HK620 IN COMPLEX WITH REMARK 900 HEXASACCHARIDE DBREF 2X6W A 110 709 UNP Q9AYY6 Q9AYY6_BPHK6 111 710 SEQADV 2X6W GLN A 372 UNP Q9AYY6 GLU 373 ENGINEERED MUTATION SEQRES 1 A 600 ASP PRO ASP GLN PHE ARG ALA ILE ILE GLU SER PRO GLU SEQRES 2 A 600 GLY ALA GLY HIS VAL GLY TYR GLN TYR ARG ARG ASN THR SEQRES 3 A 600 GLY SER THR MET ARG MET VAL SER ASP VAL LEU ASP GLU SEQRES 4 A 600 ARG VAL SER LEU TRP ASP PHE HIS CYS ASP PRO SER GLY SEQRES 5 A 600 ASN VAL ILE GLN PRO GLY PRO ASN VAL ASP SER ARG GLN SEQRES 6 A 600 TYR LEU GLN ALA ALA ILE ASP TYR VAL SER SER ASN GLY SEQRES 7 A 600 GLY GLY THR ILE THR ILE PRO ALA GLY TYR THR TRP TYR SEQRES 8 A 600 LEU GLY SER TYR GLY VAL GLY GLY ILE ALA GLY HIS SER SEQRES 9 A 600 GLY ILE ILE GLN LEU ARG SER ASN VAL ASN LEU ASN ILE SEQRES 10 A 600 GLU GLY ARG ILE HIS LEU SER PRO PHE PHE ASP LEU LYS SEQRES 11 A 600 PRO PHE GLN VAL PHE VAL GLY PHE ASP ASN GLY ASP PRO SEQRES 12 A 600 ALA SER SER GLY ASN LEU GLU ASN CYS HIS ILE TYR GLY SEQRES 13 A 600 HIS GLY VAL VAL ASP PHE GLY GLY TYR GLU PHE GLY ALA SEQRES 14 A 600 SER SER GLN LEU ARG ASN GLY VAL ALA PHE GLY ARG SER SEQRES 15 A 600 TYR ASN CYS SER VAL THR GLY ILE THR PHE GLN ASN GLY SEQRES 16 A 600 ASP VAL THR TRP ALA ILE THR LEU GLY TRP ASN GLY TYR SEQRES 17 A 600 GLY SER ASN CYS TYR VAL ARG LYS CYS ARG PHE ILE ASN SEQRES 18 A 600 LEU VAL ASN SER SER VAL ASN ALA ASP HIS SER THR VAL SEQRES 19 A 600 TYR VAL ASN CYS PRO TYR SER GLY VAL GLU SER CYS TYR SEQRES 20 A 600 PHE SER MET SER SER SER PHE ALA ARG ASN ILE ALA CYS SEQRES 21 A 600 SER VAL GLN LEU HIS GLN HIS ASP THR PHE TYR ARG GLY SEQRES 22 A 600 SER THR VAL ASN GLY TYR CYS ARG GLY ALA TYR VAL VAL SEQRES 23 A 600 MET HIS ALA ALA GLU ALA ALA GLY ALA GLY SER TYR ALA SEQRES 24 A 600 TYR ASN MET GLN VAL GLU ASN ASN ILE ALA VAL ILE TYR SEQRES 25 A 600 GLY GLN PHE VAL ILE LEU GLY SER ASP VAL THR ALA THR SEQRES 26 A 600 VAL SER GLY HIS LEU ASN ASP VAL ILE VAL SER GLY ASN SEQRES 27 A 600 ILE VAL SER ILE GLY GLU ARG ALA ALA PHE SER ALA PRO SEQRES 28 A 600 PHE GLY ALA PHE ILE ASP ILE GLY PRO ASP ASN SER GLY SEQRES 29 A 600 ALA SER ASN VAL GLN ASP ILE GLN ARG VAL LEU VAL THR SEQRES 30 A 600 GLY ASN SER PHE TYR ALA PRO ALA ASN ILE THR ASP SER SEQRES 31 A 600 ALA ALA ILE THR LEU ARG ALA ASN LEU ASN GLY CYS THR SEQRES 32 A 600 PHE ILE ALA ASN ASN PHE ASP CYS ARG TYR MET VAL TYR SEQRES 33 A 600 ASN ALA PRO GLY THR THR SER PRO VAL VAL GLN ASN LEU SEQRES 34 A 600 VAL TRP ASP LYS SER ASN VAL ILE GLY GLY THR HIS ALA SEQRES 35 A 600 ASN GLN ARG ALA GLY GLN ASN LEU PHE ASP MET GLN PHE SEQRES 36 A 600 ALA SER VAL VAL ASN SER THR ILE GLU VAL GLN LEU SER SEQRES 37 A 600 CYS GLU ASP LEU SER MET PHE SER CYS ILE LEU PHE PRO SEQRES 38 A 600 ALA SER CYS GLN LEU SER TYR SER LYS ILE THR VAL ASP SEQRES 39 A 600 SER ALA TRP THR LYS SER MET SER ASN THR ALA VAL PHE SEQRES 40 A 600 GLU GLY ASN GLN GLN ALA GLY ALA ASN VAL TYR VAL SER SEQRES 41 A 600 TYR PRO ALA THR VAL ASN LEU THR SER TYR ASN THR GLN SEQRES 42 A 600 GLY ALA VAL PRO PHE PHE SER THR ASP THR ASN TYR ALA SEQRES 43 A 600 TRP VAL THR SER ALA TYR SER LEU SER ILE ASN GLU ASN SEQRES 44 A 600 LEU ASP PHE SER PRO PRO ALA THR TYR THR ASN LYS ALA SEQRES 45 A 600 ASN GLY GLN LEU VAL GLY VAL GLY TYR ASN GLU ILE GLY SEQRES 46 A 600 GLY VAL ARG SER VAL SER VAL ARG LEU MET LEU GLN ARG SEQRES 47 A 600 GLN VAL HET NDG B 1 15 HET GLA B 2 11 HET NAG B 3 15 HET GLC B 4 11 HET GLC B 5 11 HET RAM B 6 10 HET NAG B 7 14 HET NA A 710 1 HET NA A 711 1 HET NA A 712 1 HET TRS A 726 8 HETNAM NDG 2-ACETAMIDO-2-DEOXY-ALPHA-D-GLUCOPYRANOSE HETNAM GLA ALPHA-D-GALACTOPYRANOSE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM RAM ALPHA-L-RHAMNOPYRANOSE HETNAM NA SODIUM ION HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN NDG N-ACETYL-ALPHA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 NDG ALPHA-D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2- HETSYN 3 NDG ACETAMIDO-2-DEOXY-GLUCOSE; 2-(ACETYLAMINO)-2-DEOXY-A- HETSYN 4 NDG D-GLUCOPYRANOSE HETSYN GLA ALPHA-D-GALACTOSE; D-GALACTOSE; GALACTOSE; ALPHA D- HETSYN 2 GLA GALACTOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN RAM ALPHA-L-RHAMNOSE; 6-DEOXY-ALPHA-L-MANNOPYRANOSE; L- HETSYN 2 RAM RHAMNOSE; RHAMNOSE HETSYN TRS TRIS BUFFER FORMUL 2 NDG C8 H15 N O6 FORMUL 2 GLA C6 H12 O6 FORMUL 2 NAG 2(C8 H15 N O6) FORMUL 2 GLC 2(C6 H12 O6) FORMUL 2 RAM C6 H12 O5 FORMUL 3 NA 3(NA 1+) FORMUL 6 TRS C4 H12 N O3 1+ FORMUL 7 HOH *687(H2 O) HELIX 1 1 GLN A 113 SER A 120 1 8 HELIX 2 2 GLU A 122 HIS A 126 5 5 HELIX 3 3 GLN A 130 ASN A 134 5 5 HELIX 4 4 VAL A 142 ASP A 147 1 6 HELIX 5 5 LEU A 152 PHE A 155 5 4 HELIX 6 6 SER A 172 ASN A 186 1 15 HELIX 7 7 VAL A 206 HIS A 212 5 7 HELIX 8 8 PRO A 234 ASP A 237 5 4 HELIX 9 9 ASP A 251 SER A 255 5 5 HELIX 10 10 PHE A 363 ILE A 367 1 5 HELIX 11 11 HIS A 397 ALA A 401 5 5 HELIX 12 12 ASN A 619 GLY A 623 5 5 SHEET 1 AA18 GLY A 189 ILE A 193 0 SHEET 2 AA18 ASN A 221 GLU A 227 1 O ASN A 221 N GLY A 189 SHEET 3 AA18 ASN A 260 GLY A 265 1 O ASN A 260 N ASN A 221 SHEET 4 AA18 ASN A 293 THR A 297 1 O ASN A 293 N ASN A 260 SHEET 5 AA18 CYS A 321 LYS A 325 1 N TYR A 322 O CYS A 294 SHEET 6 AA18 SER A 350 SER A 354 1 N GLY A 351 O CYS A 321 SHEET 7 AA18 ASP A 377 GLY A 382 1 N PHE A 379 O SER A 350 SHEET 8 AA18 ASN A 410 ASN A 415 1 O ASN A 410 N THR A 378 SHEET 9 AA18 ASP A 441 GLY A 446 1 O ASP A 441 N MET A 411 SHEET 10 AA18 ARG A 482 GLY A 487 1 O ARG A 482 N VAL A 442 SHEET 11 AA18 CYS A 511 ILE A 514 1 N THR A 512 O VAL A 483 SHEET 12 AA18 ASN A 537 ASP A 541 1 O ASN A 537 N CYS A 511 SHEET 13 AA18 SER A 570 VAL A 574 1 N THR A 571 O LEU A 538 SHEET 14 AA18 SER A 598 ASP A 603 1 N LYS A 599 O SER A 570 SHEET 15 AA18 ASN A 625 TYR A 639 1 O ASN A 625 N SER A 598 SHEET 16 AA18 ARG A 697 ARG A 707 -1 O ARG A 697 N SER A 638 SHEET 17 AA18 SER A 659 LEU A 663 -1 O TYR A 661 N MET A 704 SHEET 18 AA18 ALA A 675 LYS A 680 -1 O ALA A 675 N SER A 662 SHEET 1 AB 3 LEU A 258 GLU A 259 0 SHEET 2 AB 3 ARG A 290 TYR A 292 1 O ARG A 290 N LEU A 258 SHEET 3 AB 3 TYR A 317 SER A 319 1 N SER A 319 O SER A 291 SHEET 1 AC 3 TYR A 407 TYR A 409 0 SHEET 2 AC 3 HIS A 438 ASN A 440 1 O HIS A 438 N ALA A 408 SHEET 3 AC 3 ASP A 479 GLN A 481 1 O ASP A 479 N LEU A 439 SHEET 1 AD 3 PRO A 533 GLN A 536 0 SHEET 2 AD 3 ALA A 565 ASN A 569 1 N VAL A 535 O SER A 566 SHEET 3 AD 3 GLN A 594 SER A 596 1 O GLN A 594 N VAL A 567 SHEET 1 AE12 TYR A 197 LEU A 201 0 SHEET 2 AE12 GLY A 228 SER A 233 1 O TYR A 197 N ARG A 229 SHEET 3 AE12 GLY A 267 PHE A 271 1 O GLY A 228 N VAL A 268 SHEET 4 AE12 ILE A 299 ASN A 303 1 O GLY A 267 N THR A 300 SHEET 5 AE12 CYS A 326 ASN A 330 1 O ILE A 299 N ARG A 327 SHEET 6 AE12 CYS A 355 MET A 359 1 O CYS A 326 N TYR A 356 SHEET 7 AE12 SER A 383 TYR A 388 1 O CYS A 355 N THR A 384 SHEET 8 AE12 ASN A 416 TYR A 421 1 O SER A 383 N ILE A 417 SHEET 9 AE12 ASN A 447 GLY A 452 1 O ASN A 416 N ILE A 448 SHEET 10 AE12 ASN A 488 ALA A 492 1 O ASN A 447 N SER A 489 SHEET 11 AE12 ASN A 516 ASP A 519 1 O ASN A 488 N ASN A 517 SHEET 12 AE12 VAL A 545 GLY A 547 1 O ASN A 516 N VAL A 545 SHEET 1 AF14 SER A 213 LEU A 218 0 SHEET 2 AF14 PHE A 241 GLY A 246 1 O SER A 213 N GLN A 242 SHEET 3 AF14 LEU A 282 PHE A 288 1 O PHE A 241 N ASN A 284 SHEET 4 AF14 ALA A 309 LEU A 312 1 N VAL A 286 O ALA A 309 SHEET 5 AF14 HIS A 340 ASN A 346 1 N ILE A 310 O THR A 342 SHEET 6 AF14 ALA A 368 HIS A 374 1 N VAL A 343 O SER A 370 SHEET 7 AF14 ARG A 390 MET A 396 1 N VAL A 371 O GLY A 391 SHEET 8 AF14 GLY A 422 ASP A 430 1 N ALA A 392 O PHE A 424 SHEET 9 AF14 GLY A 462 GLY A 468 1 N VAL A 425 O PHE A 464 SHEET 10 AF14 ASP A 498 ARG A 505 1 N ILE A 465 O ALA A 501 SHEET 11 AF14 TYR A 522 TYR A 525 1 N ALA A 501 O TYR A 522 SHEET 12 AF14 GLN A 557 MET A 562 1 N MET A 523 O LEU A 559 SHEET 13 AF14 SER A 585 PHE A 589 1 N LEU A 559 O SER A 585 SHEET 14 AF14 THR A 613 GLU A 617 1 N CYS A 586 O THR A 613 SHEET 1 AG 3 GLY A 643 THR A 650 0 SHEET 2 AG 3 GLN A 684 GLU A 692 -1 O GLY A 643 N ASN A 691 SHEET 3 AG 3 ASP A 670 SER A 672 -1 O ASP A 670 N GLU A 692 LINK O3 ANDG B 1 C1 GLA B 2 1555 1555 1.42 LINK O6 ANDG B 1 C1 GLC B 4 1555 1555 1.36 LINK C1 GLA B 2 O3 BNAG B 3 1555 1555 1.42 LINK O4 GLA B 2 C1 GLC B 5 1555 1555 1.41 LINK O3 GLA B 2 C1 NAG B 7 1555 1555 1.35 LINK O6 BNAG B 3 C1 GLC B 4 1555 1555 1.34 LINK O6 GLC B 5 C1 RAM B 6 1555 1555 1.41 LINK O GLY A 211 NA NA A 712 1555 1555 2.43 LINK OD2 ASP A 339 NA NA A 710 1555 1555 2.62 LINK OD1 ASP A 339 NA NA A 711 1555 1555 2.66 LINK O HIS A 340 NA NA A 711 1555 1555 3.13 LINK OG ASER A 341 NA NA A 711 1555 1555 2.90 LINK NA NA A 710 O HOH A2328 1555 1555 2.41 LINK NA NA A 710 O HOH A2375 1555 1555 2.49 LINK NA NA A 710 O HOH A2427 1555 1555 2.36 LINK NA NA A 710 O HOH A2684 1555 1555 2.17 LINK NA NA A 710 O1 ANDG B 1 1555 1555 2.42 LINK NA NA A 711 O HOH A2362 1555 1555 2.73 LINK NA NA A 711 O1 ANDG B 1 1555 1555 3.03 LINK NA NA A 711 O1 BNAG B 3 1555 1555 2.42 LINK NA NA A 712 O HOH A2141 1555 1555 2.49 LINK NA NA A 712 O HOH A2142 1555 1555 2.26 LINK NA NA A 712 O HOH A2195 1555 1555 2.45 LINK NA NA A 712 O2 RAM B 6 1555 1555 2.43 LINK NA NA A 712 O3 RAM B 6 1555 1555 2.41 CRYST1 74.530 74.530 174.610 90.00 90.00 120.00 P 3 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013417 0.007747 0.000000 0.00000 SCALE2 0.000000 0.015493 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005727 0.00000