HEADER TRANSFERASE 31-MAR-10 2XAL TITLE LEAD DERIVATIVE OF INOSITOL 1,3,4,5,6-PENTAKISPHOSPHATE 2-KINASE FROM TITLE 2 A. THALIANA IN COMPLEX WITH ADP AND IP6. COMPND MOL_ID: 1; COMPND 2 MOLECULE: INOSITOL-PENTAKISPHOSPHATE 2-KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: INOSITOL 1,3,4,5,6-PENTAKISPHOSPHATE 2-KINASE, INS(1,3,4,5, COMPND 5 6)P5 2-KINASE, INSP5 2-KINASE, ATIPK1; COMPND 6 EC: 2.7.1.158; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: ROSETTA PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PKLSLT KEYWDS TRANSFERASE, INOSITOL POLYPHOSPHATE KINASE, PHYTIC ACID SYNTHASE EXPDTA X-RAY DIFFRACTION AUTHOR B.GONZALEZ,J.I.BANOS-SANZ,M.VILLATE,C.A.BREARLEY,J.SANZ-APARICIO REVDAT 9 06-NOV-24 2XAL 1 REMARK REVDAT 8 07-OCT-20 2XAL 1 COMPND REMARK HET HETNAM REVDAT 8 2 1 HETSYN LINK SITE ATOM REVDAT 7 20-NOV-19 2XAL 1 LINK REVDAT 6 30-OCT-19 2XAL 1 REMARK LINK REVDAT 5 07-MAR-18 2XAL 1 SOURCE REVDAT 4 29-FEB-12 2XAL 1 HETSYN REVDAT 3 13-JUL-11 2XAL 1 VERSN REVDAT 2 09-JUN-10 2XAL 1 JRNL REMARK REVDAT 1 19-MAY-10 2XAL 0 JRNL AUTH B.GONZALEZ,J.I.BANOS-SANZ,M.VILLATE,C.A.BREARLEY, JRNL AUTH 2 J.SANZ-APARICIO JRNL TITL INOSITOL 1,3,4,5,6-PENTAKISPHOSPHATE 2-KINASE IS A DISTANT JRNL TITL 2 IPK MEMBER WITH A SINGULAR INOSITIDE BINDING SITE FOR AXIAL JRNL TITL 3 2-OH RECOGNITION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 107 9608 2010 JRNL REFN ISSN 0027-8424 JRNL PMID 20453199 JRNL DOI 10.1073/PNAS.0912979107 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0066 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 86.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 14634 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 768 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1072 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.65 REMARK 3 BIN R VALUE (WORKING SET) : 0.2650 REMARK 3 BIN FREE R VALUE SET COUNT : 56 REMARK 3 BIN FREE R VALUE : 0.3090 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6719 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 132 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 53.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.21000 REMARK 3 B22 (A**2) : 0.52000 REMARK 3 B33 (A**2) : -0.31000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.598 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.440 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 44.748 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.907 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.852 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6972 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9433 ; 1.462 ; 2.000 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 838 ; 6.086 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 312 ;37.156 ;24.647 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1279 ;21.203 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 39 ;19.587 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1049 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5095 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4203 ; 0.483 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6789 ; 0.933 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2769 ; 1.194 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2644 ; 2.172 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 6 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 5 A 45 2 REMARK 3 1 B 5 B 45 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 164 ; 0.04 ; 0.05 REMARK 3 TIGHT POSITIONAL 1 B (A): 164 ; 0.04 ; 0.05 REMARK 3 MEDIUM POSITIONAL 1 A (A): 152 ; 0.05 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 B (A): 152 ; 0.05 ; 0.50 REMARK 3 TIGHT THERMAL 1 A (A**2): 164 ; 0.18 ; 0.50 REMARK 3 TIGHT THERMAL 1 B (A**2): 164 ; 0.18 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 152 ; 0.21 ; 2.00 REMARK 3 MEDIUM THERMAL 1 B (A**2): 152 ; 0.21 ; 2.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 60 A 150 2 REMARK 3 1 B 60 B 150 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 2 A (A): 364 ; 0.05 ; 0.05 REMARK 3 TIGHT POSITIONAL 2 B (A): 364 ; 0.05 ; 0.05 REMARK 3 MEDIUM POSITIONAL 2 A (A): 366 ; 0.07 ; 0.50 REMARK 3 MEDIUM POSITIONAL 2 B (A): 366 ; 0.07 ; 0.50 REMARK 3 TIGHT THERMAL 2 A (A**2): 364 ; 0.28 ; 0.50 REMARK 3 TIGHT THERMAL 2 B (A**2): 364 ; 0.28 ; 0.50 REMARK 3 MEDIUM THERMAL 2 A (A**2): 366 ; 0.33 ; 2.00 REMARK 3 MEDIUM THERMAL 2 B (A**2): 366 ; 0.33 ; 2.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 3 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 162 A 271 2 REMARK 3 1 B 162 B 271 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 3 A (A): 440 ; 0.05 ; 0.05 REMARK 3 TIGHT POSITIONAL 3 B (A): 440 ; 0.05 ; 0.05 REMARK 3 MEDIUM POSITIONAL 3 A (A): 424 ; 0.06 ; 0.50 REMARK 3 MEDIUM POSITIONAL 3 B (A): 424 ; 0.06 ; 0.50 REMARK 3 TIGHT THERMAL 3 A (A**2): 440 ; 0.22 ; 0.50 REMARK 3 TIGHT THERMAL 3 B (A**2): 440 ; 0.22 ; 0.50 REMARK 3 MEDIUM THERMAL 3 A (A**2): 424 ; 0.25 ; 2.00 REMARK 3 MEDIUM THERMAL 3 B (A**2): 424 ; 0.25 ; 2.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 4 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 282 A 330 2 REMARK 3 1 B 282 B 330 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 4 A (A): 196 ; 0.04 ; 0.05 REMARK 3 TIGHT POSITIONAL 4 B (A): 196 ; 0.04 ; 0.05 REMARK 3 MEDIUM POSITIONAL 4 A (A): 196 ; 0.06 ; 0.50 REMARK 3 MEDIUM POSITIONAL 4 B (A): 196 ; 0.06 ; 0.50 REMARK 3 TIGHT THERMAL 4 A (A**2): 196 ; 0.30 ; 0.50 REMARK 3 TIGHT THERMAL 4 B (A**2): 196 ; 0.30 ; 0.50 REMARK 3 MEDIUM THERMAL 4 A (A**2): 196 ; 0.32 ; 2.00 REMARK 3 MEDIUM THERMAL 4 B (A**2): 196 ; 0.32 ; 2.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 5 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 349 A 376 2 REMARK 3 1 B 349 B 376 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 5 A (A): 112 ; 0.05 ; 0.05 REMARK 3 TIGHT POSITIONAL 5 B (A): 112 ; 0.05 ; 0.05 REMARK 3 MEDIUM POSITIONAL 5 A (A): 105 ; 0.06 ; 0.50 REMARK 3 MEDIUM POSITIONAL 5 B (A): 105 ; 0.06 ; 0.50 REMARK 3 TIGHT THERMAL 5 A (A**2): 112 ; 0.28 ; 0.50 REMARK 3 TIGHT THERMAL 5 B (A**2): 112 ; 0.28 ; 0.50 REMARK 3 MEDIUM THERMAL 5 A (A**2): 105 ; 0.33 ; 2.00 REMARK 3 MEDIUM THERMAL 5 B (A**2): 105 ; 0.33 ; 2.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 6 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 400 A 432 2 REMARK 3 1 B 400 B 432 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 6 A (A): 132 ; 0.04 ; 0.05 REMARK 3 TIGHT POSITIONAL 6 B (A): 132 ; 0.04 ; 0.05 REMARK 3 MEDIUM POSITIONAL 6 A (A): 161 ; 0.07 ; 0.50 REMARK 3 MEDIUM POSITIONAL 6 B (A): 161 ; 0.07 ; 0.50 REMARK 3 TIGHT THERMAL 6 A (A**2): 132 ; 0.24 ; 0.50 REMARK 3 TIGHT THERMAL 6 B (A**2): 132 ; 0.24 ; 0.50 REMARK 3 MEDIUM THERMAL 6 A (A**2): 161 ; 0.26 ; 2.00 REMARK 3 MEDIUM THERMAL 6 B (A**2): 161 ; 0.26 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 150 REMARK 3 ORIGIN FOR THE GROUP (A): 40.3078 69.1124 30.5380 REMARK 3 T TENSOR REMARK 3 T11: 0.0334 T22: 0.0384 REMARK 3 T33: 0.0099 T12: 0.0164 REMARK 3 T13: -0.0003 T23: -0.0115 REMARK 3 L TENSOR REMARK 3 L11: 2.0893 L22: 2.0364 REMARK 3 L33: 3.3032 L12: 1.1029 REMARK 3 L13: -0.9356 L23: -1.6020 REMARK 3 S TENSOR REMARK 3 S11: -0.0843 S12: 0.1255 S13: -0.1067 REMARK 3 S21: -0.2055 S22: 0.0416 S23: -0.0573 REMARK 3 S31: 0.2883 S32: 0.1964 S33: 0.0427 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 150 REMARK 3 ORIGIN FOR THE GROUP (A): 69.1461 53.4587 79.7310 REMARK 3 T TENSOR REMARK 3 T11: 0.0486 T22: 0.0223 REMARK 3 T33: 0.0077 T12: 0.0282 REMARK 3 T13: -0.0131 T23: -0.0106 REMARK 3 L TENSOR REMARK 3 L11: 3.8723 L22: 4.0631 REMARK 3 L33: 2.1700 L12: -0.9067 REMARK 3 L13: -0.9804 L23: 0.6603 REMARK 3 S TENSOR REMARK 3 S11: -0.2672 S12: -0.0953 S13: 0.0226 REMARK 3 S21: 0.1483 S22: 0.2112 S23: -0.0892 REMARK 3 S31: 0.0712 S32: 0.0427 S33: 0.0561 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 160 A 435 REMARK 3 ORIGIN FOR THE GROUP (A): 28.8654 72.7021 48.6354 REMARK 3 T TENSOR REMARK 3 T11: 0.0344 T22: 0.0024 REMARK 3 T33: 0.0155 T12: -0.0048 REMARK 3 T13: 0.0120 T23: -0.0006 REMARK 3 L TENSOR REMARK 3 L11: 0.6837 L22: 2.0031 REMARK 3 L33: 0.8313 L12: 0.0736 REMARK 3 L13: -0.0006 L23: -0.5099 REMARK 3 S TENSOR REMARK 3 S11: 0.0456 S12: -0.0131 S13: -0.0405 REMARK 3 S21: 0.0826 S22: 0.0088 S23: 0.1356 REMARK 3 S31: -0.1112 S32: -0.0131 S33: -0.0543 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 161 B 435 REMARK 3 ORIGIN FOR THE GROUP (A): 58.3886 50.4949 60.4650 REMARK 3 T TENSOR REMARK 3 T11: 0.0456 T22: 0.1008 REMARK 3 T33: 0.0215 T12: -0.0047 REMARK 3 T13: -0.0161 T23: -0.0113 REMARK 3 L TENSOR REMARK 3 L11: 1.1627 L22: 2.2881 REMARK 3 L33: 0.7664 L12: 0.0122 REMARK 3 L13: 0.1049 L23: -0.0765 REMARK 3 S TENSOR REMARK 3 S11: -0.0350 S12: 0.1208 S13: 0.0667 REMARK 3 S21: -0.0588 S22: -0.0633 S23: 0.0532 REMARK 3 S31: 0.0177 S32: -0.1251 S33: 0.0983 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 4 REMARK 4 2XAL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-MAR-10. REMARK 100 THE DEPOSITION ID IS D_1290043518. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 5.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.94780 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15450 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 138.690 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.680 REMARK 200 R MERGE (I) : 0.15000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.3400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.41000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.660 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, AUTOSHARP REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: HIGH RESOLUTION DATA FROM PDB ENTRY 2XAM WAS NECESARY FOR REMARK 200 MODEL COMPLETION AND REFINEMENT REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG 3350, 100 MM BIS-TRIS PH 5.9, REMARK 280 SOAKING IN 100 MM LEAD ACETATE. PROTEIN WAS MIXED WITH 2 MM ADP REMARK 280 AND 2 MM INOSITOL-6-P REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.03150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.34700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.48550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.34700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.03150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.48550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 ALA A 50 REMARK 465 ILE A 51 REMARK 465 LYS A 52 REMARK 465 ASN A 53 REMARK 465 SER A 54 REMARK 465 ASN A 55 REMARK 465 GLY A 56 REMARK 465 VAL A 57 REMARK 465 VAL A 58 REMARK 465 GLY A 336 REMARK 465 ARG A 337 REMARK 465 PRO A 338 REMARK 465 LEU A 339 REMARK 465 GLU A 340 REMARK 465 ALA A 341 REMARK 465 ASN A 438 REMARK 465 THR A 439 REMARK 465 ALA A 440 REMARK 465 GLU A 441 REMARK 465 GLN A 442 REMARK 465 ILE A 443 REMARK 465 GLY A 444 REMARK 465 ASN A 445 REMARK 465 SER A 446 REMARK 465 LYS A 447 REMARK 465 PRO A 448 REMARK 465 SER A 449 REMARK 465 HIS A 450 REMARK 465 SER A 451 REMARK 465 SER B 54 REMARK 465 ASN B 55 REMARK 465 GLY B 56 REMARK 465 SER B 153 REMARK 465 GLN B 154 REMARK 465 GLY B 155 REMARK 465 ILE B 156 REMARK 465 THR B 157 REMARK 465 SER B 158 REMARK 465 GLY B 159 REMARK 465 GLY B 160 REMARK 465 TRP B 381 REMARK 465 ASP B 382 REMARK 465 THR B 439 REMARK 465 ALA B 440 REMARK 465 GLU B 441 REMARK 465 GLN B 442 REMARK 465 ILE B 443 REMARK 465 GLY B 444 REMARK 465 ASN B 445 REMARK 465 SER B 446 REMARK 465 LYS B 447 REMARK 465 PRO B 448 REMARK 465 SER B 449 REMARK 465 HIS B 450 REMARK 465 SER B 451 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER B 383 OE2 GLU B 384 1.00 REMARK 500 SG CYS B 333 ZN ZN B 700 1.25 REMARK 500 C SER B 383 OE2 GLU B 384 1.70 REMARK 500 O ALA B 341 N LEU B 345 1.79 REMARK 500 NH1 ARG A 46 CG LYS B 182 1.86 REMARK 500 ND1 HIS B 320 SG CYS B 333 1.94 REMARK 500 CA GLY A 19 O3B ADP A 600 1.98 REMARK 500 O LEU A 97 NH2 ARG A 303 2.03 REMARK 500 CA LYS B 52 O VAL B 57 2.05 REMARK 500 ND1 HIS B 149 CB HIS B 404 2.05 REMARK 500 OD2 ASP B 407 O1B ADP B 600 2.08 REMARK 500 NH2 ARG B 378 OD1 ASP B 400 2.11 REMARK 500 ND2 ASN A 47 CE MET B 185 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 312 CG GLU B 202 1455 1.84 REMARK 500 NZ LYS B 124 O LYS B 273 4556 1.87 REMARK 500 NZ LYS A 312 CD GLU B 202 1455 2.04 REMARK 500 CE3 TRP A 381 OE1 GLU B 223 3655 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 385 C - N - CA ANGL. DEV. = 17.3 DEGREES REMARK 500 PRO B 385 C - N - CD ANGL. DEV. = -16.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 16 -33.71 -130.38 REMARK 500 SER A 30 19.63 -145.18 REMARK 500 SER A 77 48.43 -99.02 REMARK 500 ASN A 132 -38.32 -35.60 REMARK 500 ASP A 137 94.07 -68.97 REMARK 500 HIS A 149 3.65 -66.59 REMARK 500 ILE A 156 73.56 -16.61 REMARK 500 SER A 158 121.29 -6.97 REMARK 500 ASP A 161 158.87 -34.13 REMARK 500 LYS A 170 -160.73 60.56 REMARK 500 MET A 185 -15.67 -49.96 REMARK 500 LYS A 222 -28.67 -39.07 REMARK 500 GLN A 237 -119.57 25.43 REMARK 500 ASP A 314 148.48 78.03 REMARK 500 LEU A 343 -7.40 -39.96 REMARK 500 GLN A 376 130.14 -172.13 REMARK 500 ARG A 378 149.19 -39.92 REMARK 500 ALA A 380 31.56 -69.11 REMARK 500 PRO A 385 102.60 -55.60 REMARK 500 SER A 386 161.67 -28.93 REMARK 500 LYS A 393 -82.88 -25.62 REMARK 500 ASP A 407 60.35 39.32 REMARK 500 LEU A 408 47.79 -96.12 REMARK 500 ALA A 436 90.56 -62.81 REMARK 500 GLU B 2 -4.99 163.87 REMARK 500 ARG B 16 -31.37 -134.68 REMARK 500 SER B 30 16.70 -141.88 REMARK 500 ALA B 50 -141.74 -74.10 REMARK 500 GLU B 71 -53.17 -21.26 REMARK 500 SER B 77 49.17 -99.03 REMARK 500 HIS B 149 3.03 -57.65 REMARK 500 LYS B 170 -165.72 58.68 REMARK 500 MET B 185 -15.64 -47.88 REMARK 500 LYS B 222 -32.28 -32.53 REMARK 500 GLN B 237 -117.00 24.78 REMARK 500 PHE B 275 -50.15 -163.62 REMARK 500 GLN B 277 64.74 -116.04 REMARK 500 ASP B 280 39.85 -59.13 REMARK 500 ASP B 314 152.22 80.50 REMARK 500 TYR B 322 -72.17 -35.99 REMARK 500 ILE B 332 -74.30 -91.25 REMARK 500 CYS B 333 -8.66 -40.91 REMARK 500 ALA B 347 27.32 -73.83 REMARK 500 ASN B 379 74.89 -50.31 REMARK 500 PRO B 385 129.48 -36.23 REMARK 500 ASP B 407 59.04 38.72 REMARK 500 LEU B 408 45.17 -95.53 REMARK 500 LYS B 435 2.04 -61.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 700 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 320 ND1 REMARK 620 2 CYS A 330 SG 110.9 REMARK 620 3 CYS A 333 SG 106.7 94.6 REMARK 620 4 HIS A 346 NE2 101.7 122.8 119.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 PB A 501 PB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 407 OD2 REMARK 620 2 IHP A 500 O23 106.6 REMARK 620 3 IHP A 500 O43 56.1 51.1 REMARK 620 4 ADP A 600 O2B 46.9 99.6 60.3 REMARK 620 5 ADP A 600 O3B 95.6 71.1 71.6 50.7 REMARK 620 6 ADP A 600 O2A 89.4 141.6 126.3 66.0 72.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 PB A 502 PB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 407 OD1 REMARK 620 2 ASP A 407 OD2 52.7 REMARK 620 3 SER A 409 OG 55.6 106.1 REMARK 620 4 IHP A 500 O43 112.1 60.2 151.8 REMARK 620 5 ADP A 600 O2B 68.0 59.1 107.7 86.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 700 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 320 ND1 REMARK 620 2 CYS B 330 SG 81.4 REMARK 620 3 HIS B 346 NE2 108.3 134.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 PB B 503 PB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 407 OD2 REMARK 620 2 IHP B 500 O23 82.0 REMARK 620 3 ADP B 600 O1B 52.6 70.2 REMARK 620 4 ADP B 600 O1A 81.3 148.5 78.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 PB B 504 PB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 407 OD1 REMARK 620 2 ASP B 407 OD2 58.5 REMARK 620 3 SER B 409 OG 61.3 116.0 REMARK 620 4 IHP B 500 O43 134.0 78.4 140.8 REMARK 620 5 ADP B 600 O2B 67.4 85.5 90.4 128.2 REMARK 620 6 ADP B 600 O1B 87.2 51.5 141.5 76.8 55.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IHP A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PB A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PB A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 700 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IHP B 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PB B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PB B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 700 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2XAO RELATED DB: PDB REMARK 900 INOSITOL 1,3,4,5,6-PENTAKISPHOSPHATE 2- KINASE FROM A. THALIANA IN REMARK 900 COMPLEX WITH IP5 REMARK 900 RELATED ID: 2XAN RELATED DB: PDB REMARK 900 INOSITOL 1,3,4,5,6-PENTAKISPHOSPHATE 2- KINASE FROM A. THALIANA IN REMARK 900 COMPLEX WITH AMP PNP AND IP5 REMARK 900 RELATED ID: 2XAM RELATED DB: PDB REMARK 900 INOSITOL 1,3,4,5,6-PENTAKISPHOSPHATE 2- KINASE FROM A. THALIANA IN REMARK 900 COMPLEX WITH ADP AND IP6. REMARK 900 RELATED ID: 2XAR RELATED DB: PDB REMARK 900 INOSITOL 1,3,4,5,6-PENTAKISPHOSPHATE 2- KINASE FROM A. THALIANA IN REMARK 900 COMPLEX WITH IP6. REMARK 999 REMARK 999 SEQUENCE REMARK 999 THERE ARE SEVERAL DISCREPANCES IN SEQUENCE BETWEEN THE REMARK 999 DATABASE ANNOTATION AND THE CRYSTALLISED PROTEIN DBREF 2XAL A 1 451 UNP Q93YN9 IPPK_ARATH 1 451 DBREF 2XAL B 1 451 UNP Q93YN9 IPPK_ARATH 1 451 SEQADV 2XAL SER A 54 UNP Q93YN9 ALA 54 CONFLICT SEQADV 2XAL GLN A 90 UNP Q93YN9 LYS 90 CONFLICT SEQADV 2XAL THR A 157 UNP Q93YN9 SER 157 CONFLICT SEQADV 2XAL ILE A 204 UNP Q93YN9 ASN 204 CONFLICT SEQADV 2XAL ARG A 224 UNP Q93YN9 SER 224 CONFLICT SEQADV 2XAL CYS A 321 UNP Q93YN9 SER 321 CONFLICT SEQADV 2XAL ILE A 325 UNP Q93YN9 LEU 325 CONFLICT SEQADV 2XAL ARG A 337 UNP Q93YN9 LYS 337 CONFLICT SEQADV 2XAL SER B 54 UNP Q93YN9 ALA 54 CONFLICT SEQADV 2XAL GLN B 90 UNP Q93YN9 LYS 90 CONFLICT SEQADV 2XAL THR B 157 UNP Q93YN9 SER 157 CONFLICT SEQADV 2XAL ILE B 204 UNP Q93YN9 ASN 204 CONFLICT SEQADV 2XAL ARG B 224 UNP Q93YN9 SER 224 CONFLICT SEQADV 2XAL CYS B 321 UNP Q93YN9 SER 321 CONFLICT SEQADV 2XAL ILE B 325 UNP Q93YN9 LEU 325 CONFLICT SEQADV 2XAL ARG B 337 UNP Q93YN9 LYS 337 CONFLICT SEQRES 1 A 451 MET GLU MET ILE LEU GLU GLU LYS ASP ALA SER ASP TRP SEQRES 2 A 451 ILE TYR ARG GLY GLU GLY GLY ALA ASN LEU VAL LEU ALA SEQRES 3 A 451 TYR ALA GLY SER SER PRO LEU PHE VAL GLY LYS VAL ILE SEQRES 4 A 451 ARG ILE GLN LYS ALA ARG ARG ASN ASP LYS ALA ILE LYS SEQRES 5 A 451 ASN SER ASN GLY VAL VAL SER VAL LEU THR SER ASP GLU SEQRES 6 A 451 GLN HIS LEU TRP ARG GLU ASN ASN GLU LEU ILE SER SER SEQRES 7 A 451 PRO ASN LYS GLU VAL LEU GLU GLN ARG TYR VAL GLN ASN SEQRES 8 A 451 VAL ILE ILE PRO LEU LEU GLY PRO LYS HIS VAL ASP ALA SEQRES 9 A 451 GLY VAL ARG VAL SER VAL SER LYS GLU PHE LEU GLU CYS SEQRES 10 A 451 VAL ASP LYS LYS VAL THR LYS GLN ARG PRO LEU TRP ARG SEQRES 11 A 451 VAL ASN ALA ALA ASN VAL ASP THR SER HIS ASP SER ALA SEQRES 12 A 451 LEU ILE LEU ASN ASP HIS SER LEU PHE SER GLN GLY ILE SEQRES 13 A 451 THR SER GLY GLY ASP CYS ILE SER VAL GLU ILE LYS PRO SEQRES 14 A 451 LYS CYS GLY PHE LEU PRO THR SER ARG PHE ILE GLY LYS SEQRES 15 A 451 GLU ASN MET LEU LYS THR SER VAL SER ARG PHE LYS MET SEQRES 16 A 451 HIS GLN LEU LEU LYS LEU GLU TYR ILE GLU ILE SER GLU SEQRES 17 A 451 GLU SER GLU TYR ASP PRO LEU ASP LEU PHE SER GLY SER SEQRES 18 A 451 LYS GLU ARG VAL LEU GLU ALA ILE LYS ALA LEU TYR SER SEQRES 19 A 451 THR PRO GLN ASN ASN PHE ARG VAL PHE LEU ASN GLY SER SEQRES 20 A 451 LEU ILE LEU GLY GLY SER GLY GLU SER THR GLY ARG THR SEQRES 21 A 451 SER PRO GLU ILE GLY TYR ALA PHE GLU ASP ALA LEU LYS SEQRES 22 A 451 GLY PHE ILE GLN SER GLU ASP GLY HIS ARG THR GLU CYS SEQRES 23 A 451 PHE LEU GLN LEU VAL SER ASP ALA VAL TYR GLY SER GLY SEQRES 24 A 451 VAL LEU ASP ARG LEU LEU GLU ILE GLN LYS LEU ASP LYS SEQRES 25 A 451 LEU ASP ILE GLU GLY ALA ILE HIS CYS TYR TYR ASP ILE SEQRES 26 A 451 ILE ASN GLN PRO CYS PRO ILE CYS LYS GLU GLY ARG PRO SEQRES 27 A 451 LEU GLU ALA GLU LEU SER LEU HIS ALA LEU PRO LEU ASP SEQRES 28 A 451 GLU SER LEU LYS ILE VAL LYS GLU TYR LEU ILE ALA ALA SEQRES 29 A 451 THR ALA LYS ASP CYS SER ILE MET ILE SER PHE GLN SER SEQRES 30 A 451 ARG ASN ALA TRP ASP SER GLU PRO SER GLY ASP TYR VAL SEQRES 31 A 451 SER LEU LYS PRO THR ASN GLN THR PHE ASP TYR LYS VAL SEQRES 32 A 451 HIS PHE ILE ASP LEU SER LEU LYS PRO LEU LYS ARG MET SEQRES 33 A 451 GLU SER TYR TYR LYS LEU ASP LYS LYS ILE ILE SER PHE SEQRES 34 A 451 TYR ASN ARG LYS GLN LYS ALA GLU ASN THR ALA GLU GLN SEQRES 35 A 451 ILE GLY ASN SER LYS PRO SER HIS SER SEQRES 1 B 451 MET GLU MET ILE LEU GLU GLU LYS ASP ALA SER ASP TRP SEQRES 2 B 451 ILE TYR ARG GLY GLU GLY GLY ALA ASN LEU VAL LEU ALA SEQRES 3 B 451 TYR ALA GLY SER SER PRO LEU PHE VAL GLY LYS VAL ILE SEQRES 4 B 451 ARG ILE GLN LYS ALA ARG ARG ASN ASP LYS ALA ILE LYS SEQRES 5 B 451 ASN SER ASN GLY VAL VAL SER VAL LEU THR SER ASP GLU SEQRES 6 B 451 GLN HIS LEU TRP ARG GLU ASN ASN GLU LEU ILE SER SER SEQRES 7 B 451 PRO ASN LYS GLU VAL LEU GLU GLN ARG TYR VAL GLN ASN SEQRES 8 B 451 VAL ILE ILE PRO LEU LEU GLY PRO LYS HIS VAL ASP ALA SEQRES 9 B 451 GLY VAL ARG VAL SER VAL SER LYS GLU PHE LEU GLU CYS SEQRES 10 B 451 VAL ASP LYS LYS VAL THR LYS GLN ARG PRO LEU TRP ARG SEQRES 11 B 451 VAL ASN ALA ALA ASN VAL ASP THR SER HIS ASP SER ALA SEQRES 12 B 451 LEU ILE LEU ASN ASP HIS SER LEU PHE SER GLN GLY ILE SEQRES 13 B 451 THR SER GLY GLY ASP CYS ILE SER VAL GLU ILE LYS PRO SEQRES 14 B 451 LYS CYS GLY PHE LEU PRO THR SER ARG PHE ILE GLY LYS SEQRES 15 B 451 GLU ASN MET LEU LYS THR SER VAL SER ARG PHE LYS MET SEQRES 16 B 451 HIS GLN LEU LEU LYS LEU GLU TYR ILE GLU ILE SER GLU SEQRES 17 B 451 GLU SER GLU TYR ASP PRO LEU ASP LEU PHE SER GLY SER SEQRES 18 B 451 LYS GLU ARG VAL LEU GLU ALA ILE LYS ALA LEU TYR SER SEQRES 19 B 451 THR PRO GLN ASN ASN PHE ARG VAL PHE LEU ASN GLY SER SEQRES 20 B 451 LEU ILE LEU GLY GLY SER GLY GLU SER THR GLY ARG THR SEQRES 21 B 451 SER PRO GLU ILE GLY TYR ALA PHE GLU ASP ALA LEU LYS SEQRES 22 B 451 GLY PHE ILE GLN SER GLU ASP GLY HIS ARG THR GLU CYS SEQRES 23 B 451 PHE LEU GLN LEU VAL SER ASP ALA VAL TYR GLY SER GLY SEQRES 24 B 451 VAL LEU ASP ARG LEU LEU GLU ILE GLN LYS LEU ASP LYS SEQRES 25 B 451 LEU ASP ILE GLU GLY ALA ILE HIS CYS TYR TYR ASP ILE SEQRES 26 B 451 ILE ASN GLN PRO CYS PRO ILE CYS LYS GLU GLY ARG PRO SEQRES 27 B 451 LEU GLU ALA GLU LEU SER LEU HIS ALA LEU PRO LEU ASP SEQRES 28 B 451 GLU SER LEU LYS ILE VAL LYS GLU TYR LEU ILE ALA ALA SEQRES 29 B 451 THR ALA LYS ASP CYS SER ILE MET ILE SER PHE GLN SER SEQRES 30 B 451 ARG ASN ALA TRP ASP SER GLU PRO SER GLY ASP TYR VAL SEQRES 31 B 451 SER LEU LYS PRO THR ASN GLN THR PHE ASP TYR LYS VAL SEQRES 32 B 451 HIS PHE ILE ASP LEU SER LEU LYS PRO LEU LYS ARG MET SEQRES 33 B 451 GLU SER TYR TYR LYS LEU ASP LYS LYS ILE ILE SER PHE SEQRES 34 B 451 TYR ASN ARG LYS GLN LYS ALA GLU ASN THR ALA GLU GLN SEQRES 35 B 451 ILE GLY ASN SER LYS PRO SER HIS SER HET IHP A 500 36 HET PB A 501 1 HET PB A 502 1 HET ADP A 600 27 HET ZN A 700 1 HET IHP B 500 36 HET PB B 503 1 HET PB B 504 1 HET ADP B 600 27 HET ZN B 700 1 HETNAM IHP INOSITOL HEXAKISPHOSPHATE HETNAM PB LEAD (II) ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM ZN ZINC ION HETSYN IHP MYO-INOSITOL HEXAKISPHOSPHATE; INOSITOL 1,2,3,4,5,6- HETSYN 2 IHP HEXAKISPHOSPHATE FORMUL 3 IHP 2(C6 H18 O24 P6) FORMUL 4 PB 4(PB 2+) FORMUL 6 ADP 2(C10 H15 N5 O10 P2) FORMUL 7 ZN 2(ZN 2+) HELIX 1 1 GLU A 6 SER A 11 5 6 HELIX 2 2 THR A 62 TRP A 69 1 8 HELIX 3 3 ASN A 72 SER A 77 1 6 HELIX 4 4 ASN A 80 VAL A 92 1 13 HELIX 5 5 VAL A 92 GLY A 98 1 7 HELIX 6 6 SER A 111 LYS A 124 1 14 HELIX 7 7 PRO A 127 ALA A 133 1 7 HELIX 8 8 ASN A 184 SER A 189 5 6 HELIX 9 9 SER A 191 TYR A 203 1 13 HELIX 10 10 ASP A 213 SER A 219 1 7 HELIX 11 11 SER A 221 THR A 235 1 15 HELIX 12 12 SER A 261 LEU A 272 1 12 HELIX 13 13 HIS A 282 GLY A 299 1 18 HELIX 14 14 GLY A 299 LYS A 309 1 11 HELIX 15 15 ASP A 314 ILE A 326 1 13 HELIX 16 16 SER A 344 LEU A 348 5 5 HELIX 17 17 PRO A 349 CYS A 369 1 21 HELIX 18 18 LYS A 414 ALA A 436 1 23 HELIX 19 19 GLU B 6 SER B 11 5 6 HELIX 20 20 ASN B 47 LYS B 49 5 3 HELIX 21 21 THR B 62 TRP B 69 1 8 HELIX 22 22 ASN B 72 SER B 77 1 6 HELIX 23 23 ASN B 80 VAL B 92 1 13 HELIX 24 24 VAL B 92 GLY B 98 1 7 HELIX 25 25 SER B 111 LYS B 124 1 14 HELIX 26 26 PRO B 127 ALA B 133 1 7 HELIX 27 27 LYS B 182 SER B 189 5 8 HELIX 28 28 SER B 191 TYR B 203 1 13 HELIX 29 29 ASP B 213 SER B 219 1 7 HELIX 30 30 SER B 221 THR B 235 1 15 HELIX 31 31 SER B 261 LEU B 272 1 12 HELIX 32 32 HIS B 282 GLY B 299 1 18 HELIX 33 33 GLY B 299 LYS B 309 1 11 HELIX 34 34 ASP B 314 ILE B 326 1 13 HELIX 35 35 LEU B 339 ALA B 347 1 9 HELIX 36 36 PRO B 349 CYS B 369 1 21 HELIX 37 37 LYS B 414 LYS B 435 1 22 SHEET 1 AA 5 ILE A 4 LEU A 5 0 SHEET 2 AA 5 VAL A 106 VAL A 110 1 O SER A 109 N LEU A 5 SHEET 3 AA 5 SER A 142 ASN A 147 -1 O ALA A 143 N VAL A 108 SHEET 4 AA 5 LYS A 37 ARG A 45 -1 O VAL A 38 N LEU A 146 SHEET 5 AA 5 ALA A 134 VAL A 136 -1 O ASN A 135 N ALA A 44 SHEET 1 AB 6 ILE A 4 LEU A 5 0 SHEET 2 AB 6 VAL A 106 VAL A 110 1 O SER A 109 N LEU A 5 SHEET 3 AB 6 SER A 142 ASN A 147 -1 O ALA A 143 N VAL A 108 SHEET 4 AB 6 LYS A 37 ARG A 45 -1 O VAL A 38 N LEU A 146 SHEET 5 AB 6 ASN A 22 TYR A 27 -1 O LEU A 23 N ILE A 41 SHEET 6 AB 6 TRP A 13 GLU A 18 -1 O ILE A 14 N ALA A 26 SHEET 1 AC 2 ALA A 134 VAL A 136 0 SHEET 2 AC 2 LYS A 37 ARG A 45 -1 O ALA A 44 N ASN A 135 SHEET 1 AD 6 SER A 247 LEU A 250 0 SHEET 2 AD 6 PHE A 240 LEU A 244 -1 O VAL A 242 N ILE A 249 SHEET 3 AD 6 ILE A 163 ILE A 167 -1 O SER A 164 N PHE A 243 SHEET 4 AD 6 SER A 370 SER A 377 -1 O ILE A 371 N ILE A 167 SHEET 5 AD 6 GLN A 397 ILE A 406 -1 O ASP A 400 N GLN A 376 SHEET 6 AD 6 TYR A 389 LEU A 392 -1 O VAL A 390 N PHE A 399 SHEET 1 BA 5 ILE B 4 LEU B 5 0 SHEET 2 BA 5 VAL B 106 VAL B 110 1 O SER B 109 N LEU B 5 SHEET 3 BA 5 SER B 142 ASN B 147 -1 O ALA B 143 N VAL B 108 SHEET 4 BA 5 LYS B 37 ARG B 45 -1 O VAL B 38 N LEU B 146 SHEET 5 BA 5 ALA B 134 VAL B 136 -1 O ASN B 135 N ALA B 44 SHEET 1 BB 6 ILE B 4 LEU B 5 0 SHEET 2 BB 6 VAL B 106 VAL B 110 1 O SER B 109 N LEU B 5 SHEET 3 BB 6 SER B 142 ASN B 147 -1 O ALA B 143 N VAL B 108 SHEET 4 BB 6 LYS B 37 ARG B 45 -1 O VAL B 38 N LEU B 146 SHEET 5 BB 6 ASN B 22 TYR B 27 -1 O LEU B 23 N ILE B 41 SHEET 6 BB 6 TRP B 13 GLU B 18 -1 O ILE B 14 N ALA B 26 SHEET 1 BC 2 ALA B 134 VAL B 136 0 SHEET 2 BC 2 LYS B 37 ARG B 45 -1 O ALA B 44 N ASN B 135 SHEET 1 BD 6 SER B 247 LEU B 250 0 SHEET 2 BD 6 PHE B 240 LEU B 244 -1 O VAL B 242 N ILE B 249 SHEET 3 BD 6 CYS B 162 ILE B 167 -1 O SER B 164 N PHE B 243 SHEET 4 BD 6 SER B 370 SER B 377 -1 O ILE B 371 N ILE B 167 SHEET 5 BD 6 GLN B 397 ILE B 406 -1 O ASP B 400 N GLN B 376 SHEET 6 BD 6 TYR B 389 LEU B 392 -1 O VAL B 390 N PHE B 399 SSBOND 1 CYS B 330 CYS B 333 1555 1555 2.05 LINK ND1 HIS A 320 ZN ZN A 700 1555 1555 1.96 LINK SG CYS A 330 ZN ZN A 700 1555 1555 2.27 LINK SG CYS A 333 ZN ZN A 700 1555 1555 2.25 LINK NE2 HIS A 346 ZN ZN A 700 1555 1555 2.01 LINK OD2 ASP A 407 PB PB A 501 1555 1555 2.31 LINK OD1 ASP A 407 PB PB A 502 1555 1555 2.34 LINK OD2 ASP A 407 PB PB A 502 1555 1555 2.55 LINK OG SER A 409 PB PB A 502 1555 1555 3.08 LINK O23 IHP A 500 PB PB A 501 1555 1555 3.01 LINK O43 IHP A 500 PB PB A 501 1555 1555 2.87 LINK O43 IHP A 500 PB PB A 502 1555 1555 2.40 LINK PB PB A 501 O2B ADP A 600 1555 1555 3.13 LINK PB PB A 501 O3B ADP A 600 1555 1555 2.71 LINK PB PB A 501 O2A ADP A 600 1555 1555 2.32 LINK PB PB A 502 O2B ADP A 600 1555 1555 1.98 LINK ND1 HIS B 320 ZN ZN B 700 1555 1555 2.59 LINK SG CYS B 330 ZN ZN B 700 1555 1555 2.64 LINK NE2 HIS B 346 ZN ZN B 700 1555 1555 1.73 LINK OD2 ASP B 407 PB PB B 503 1555 1555 2.24 LINK OD1 ASP B 407 PB PB B 504 1555 1555 2.10 LINK OD2 ASP B 407 PB PB B 504 1555 1555 2.38 LINK OG SER B 409 PB PB B 504 1555 1555 2.74 LINK O23 IHP B 500 PB PB B 503 1555 1555 2.31 LINK O43 IHP B 500 PB PB B 504 1555 1555 2.28 LINK PB PB B 503 O1B ADP B 600 1555 1555 2.43 LINK PB PB B 503 O1A ADP B 600 1555 1555 2.27 LINK PB PB B 504 O2B ADP B 600 1555 1555 2.84 LINK PB PB B 504 O1B ADP B 600 1555 1555 2.39 SITE 1 AC1 18 GLY A 19 GLY A 20 ALA A 21 ARG A 45 SITE 2 AC1 18 ARG A 130 LYS A 168 LYS A 170 HIS A 196 SITE 3 AC1 18 LYS A 200 ASN A 238 ASP A 368 ASP A 407 SITE 4 AC1 18 LYS A 411 ARG A 415 TYR A 419 PB A 501 SITE 5 AC1 18 PB A 502 ADP A 600 SITE 1 AC2 3 ASP A 407 IHP A 500 ADP A 600 SITE 1 AC3 4 ASP A 407 SER A 409 IHP A 500 ADP A 600 SITE 1 AC4 17 GLY A 19 GLY A 20 ALA A 21 ASN A 22 SITE 2 AC4 17 VAL A 24 ARG A 40 ASN A 147 ASP A 148 SITE 3 AC4 17 HIS A 149 GLU A 166 ARG A 241 PHE A 243 SITE 4 AC4 17 MET A 372 ASP A 407 IHP A 500 PB A 501 SITE 5 AC4 17 PB A 502 SITE 1 AC5 4 HIS A 320 CYS A 330 CYS A 333 HIS A 346 SITE 1 AC6 17 GLY B 19 GLY B 20 ARG B 45 ARG B 130 SITE 2 AC6 17 LYS B 168 LYS B 170 HIS B 196 LYS B 200 SITE 3 AC6 17 ASN B 238 ASP B 368 ASP B 407 LYS B 411 SITE 4 AC6 17 ARG B 415 TYR B 419 PB B 503 PB B 504 SITE 5 AC6 17 ADP B 600 SITE 1 AC7 3 ASP B 407 IHP B 500 ADP B 600 SITE 1 AC8 4 ASP B 407 SER B 409 IHP B 500 ADP B 600 SITE 1 AC9 17 GLY B 19 GLY B 20 ALA B 21 ASN B 22 SITE 2 AC9 17 VAL B 24 VAL B 38 ARG B 40 ASN B 147 SITE 3 AC9 17 ASP B 148 HIS B 149 GLU B 166 MET B 372 SITE 4 AC9 17 ILE B 406 ASP B 407 IHP B 500 PB B 503 SITE 5 AC9 17 PB B 504 SITE 1 BC1 4 HIS B 320 CYS B 330 CYS B 333 HIS B 346 CRYST1 58.063 110.971 138.694 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017223 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009011 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007210 0.00000 MTRIX1 1 0.997760 0.055260 0.037590 -34.32505 1 MTRIX2 1 0.057990 -0.995430 -0.075920 123.48315 1 MTRIX3 1 0.033220 0.077930 -0.996410 103.57463 1