HEADER HYDROLASE 01-APR-10 2XB0 TITLE DNA-BINDING DOMAIN FROM SACCHAROMYCES CEREVISIAE CHROMATIN- TITLE 2 REMODELLING PROTEIN CHD1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHROMO DOMAIN-CONTAINING PROTEIN 1; COMPND 3 CHAIN: X; COMPND 4 FRAGMENT: DNA BINDING DOMAIN, RESIDUES 1009-1274; COMPND 5 SYNONYM: ATP-DEPENDENT HELICASE CHD1, CHD1; COMPND 6 EC: 3.6.1.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA2 PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-6P KEYWDS HYDROLASE, DNA-BINDING PROTEIN, TRANSCRIPTION, CHROMATIN REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR D.P.RYAN,R.SUNDARAMOORTHY,T.OWEN-HUGHES REVDAT 5 08-MAY-24 2XB0 1 REMARK REVDAT 4 06-MAR-13 2XB0 1 REMARK HETSYN REVDAT 3 27-JUL-11 2XB0 1 JRNL REMARK VERSN REVDAT 2 08-JUN-11 2XB0 1 SOURCE JRNL REMARK REVDAT 1 11-MAY-11 2XB0 0 JRNL AUTH D.P.RYAN,R.SUNDARAMOORTHY,D.MARTIN,V.SINGH,T.OWEN-HUGHES JRNL TITL THE DNA-BINDING DOMAIN OF THE CHD1 CHROMATIN- REMODELLING JRNL TITL 2 ENZYME CONTAINS SANT AND SLIDE DOMAINS. JRNL REF EMBO J. V. 30 2596 2011 JRNL REFN ISSN 0261-4189 JRNL PMID 21623345 JRNL DOI 10.1038/EMBOJ.2011.166 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.26 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 22894 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2263 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.2699 - 4.3081 0.97 2226 242 0.1866 0.1995 REMARK 3 2 4.3081 - 3.4197 0.99 2120 234 0.1754 0.2323 REMARK 3 3 3.4197 - 2.9875 0.98 2072 246 0.2173 0.2662 REMARK 3 4 2.9875 - 2.7144 0.98 2084 228 0.2091 0.2676 REMARK 3 5 2.7144 - 2.5198 0.98 2021 248 0.1961 0.2583 REMARK 3 6 2.5198 - 2.3713 0.97 2062 206 0.1984 0.2563 REMARK 3 7 2.3713 - 2.2525 0.96 2002 233 0.2126 0.2817 REMARK 3 8 2.2525 - 2.1544 0.96 2029 210 0.2413 0.3087 REMARK 3 9 2.1544 - 2.0715 0.98 2026 208 0.2838 0.3008 REMARK 3 10 2.0715 - 2.0000 0.95 1989 208 0.3270 0.3591 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 66.11 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.500 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.64 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.84280 REMARK 3 B22 (A**2) : 5.02380 REMARK 3 B33 (A**2) : -6.86660 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.018 1938 REMARK 3 ANGLE : 1.359 2598 REMARK 3 CHIRALITY : 0.085 279 REMARK 3 PLANARITY : 0.005 330 REMARK 3 DIHEDRAL : 14.263 752 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN X AND RESID 1:60) REMARK 3 ORIGIN FOR THE GROUP (A): 10.6756 65.3063 79.2636 REMARK 3 T TENSOR REMARK 3 T11: 0.4699 T22: 0.3210 REMARK 3 T33: 0.2512 T12: -0.0347 REMARK 3 T13: -0.0893 T23: 0.0324 REMARK 3 L TENSOR REMARK 3 L11: 0.5134 L22: 2.4028 REMARK 3 L33: 1.8240 L12: 0.2610 REMARK 3 L13: 0.4040 L23: 2.0332 REMARK 3 S TENSOR REMARK 3 S11: -0.0189 S12: -0.1516 S13: -0.0188 REMARK 3 S21: 0.7428 S22: 0.1675 S23: -0.2586 REMARK 3 S31: 0.3300 S32: 0.2885 S33: -0.1368 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN X AND RESID 61:108) REMARK 3 ORIGIN FOR THE GROUP (A): -10.6744 34.2717 55.7702 REMARK 3 T TENSOR REMARK 3 T11: 0.8428 T22: 0.3014 REMARK 3 T33: 0.2257 T12: -0.0351 REMARK 3 T13: -0.0412 T23: -0.0089 REMARK 3 L TENSOR REMARK 3 L11: 2.3943 L22: 3.2675 REMARK 3 L33: 0.8162 L12: 1.5120 REMARK 3 L13: 0.9081 L23: 0.0964 REMARK 3 S TENSOR REMARK 3 S11: -0.2821 S12: 0.2469 S13: -0.0041 REMARK 3 S21: -1.0554 S22: 0.3969 S23: -0.0605 REMARK 3 S31: 0.1143 S32: 0.0501 S33: -0.0829 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN X AND RESID 109:128) REMARK 3 ORIGIN FOR THE GROUP (A): -1.2847 52.3863 74.4755 REMARK 3 T TENSOR REMARK 3 T11: 0.6494 T22: 0.3681 REMARK 3 T33: 0.3873 T12: -0.1447 REMARK 3 T13: -0.0506 T23: 0.1101 REMARK 3 L TENSOR REMARK 3 L11: 2.3422 L22: 0.7180 REMARK 3 L33: 5.1544 L12: 0.1727 REMARK 3 L13: 2.3681 L23: 1.5019 REMARK 3 S TENSOR REMARK 3 S11: 0.2534 S12: -0.1417 S13: -0.7285 REMARK 3 S21: 0.0753 S22: -0.6913 S23: -0.1426 REMARK 3 S31: 0.8482 S32: -0.0586 S33: 0.1162 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN X AND RESID 129:205) REMARK 3 ORIGIN FOR THE GROUP (A): -1.8310 75.6372 58.5856 REMARK 3 T TENSOR REMARK 3 T11: 0.0630 T22: 0.1728 REMARK 3 T33: 0.2710 T12: 0.0027 REMARK 3 T13: -0.0073 T23: -0.1003 REMARK 3 L TENSOR REMARK 3 L11: 1.9885 L22: 1.3934 REMARK 3 L33: 1.8499 L12: 0.9547 REMARK 3 L13: 0.3068 L23: 0.8226 REMARK 3 S TENSOR REMARK 3 S11: 0.0822 S12: -0.1246 S13: 0.6320 REMARK 3 S21: 0.0012 S22: -0.1703 S23: 0.0882 REMARK 3 S31: -0.0359 S32: -0.2246 S33: 0.1405 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN X AND RESID 206:250) REMARK 3 ORIGIN FOR THE GROUP (A): -15.4940 75.1158 66.0314 REMARK 3 T TENSOR REMARK 3 T11: 0.1251 T22: 0.8782 REMARK 3 T33: 0.5123 T12: -0.1660 REMARK 3 T13: 0.0986 T23: -0.4324 REMARK 3 L TENSOR REMARK 3 L11: 0.9192 L22: 0.6396 REMARK 3 L33: 0.4060 L12: 0.7220 REMARK 3 L13: 0.5578 L23: 0.4402 REMARK 3 S TENSOR REMARK 3 S11: 0.3516 S12: -1.4781 S13: 0.9828 REMARK 3 S21: 0.3615 S22: -0.8365 S23: 0.4929 REMARK 3 S31: 0.1704 S32: -0.7768 S33: 0.4399 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN X AND RESID 251:266) REMARK 3 ORIGIN FOR THE GROUP (A): -4.3266 63.9790 56.8805 REMARK 3 T TENSOR REMARK 3 T11: 0.1906 T22: 0.2784 REMARK 3 T33: 0.2942 T12: -0.1045 REMARK 3 T13: -0.0073 T23: -0.0336 REMARK 3 L TENSOR REMARK 3 L11: 1.6454 L22: 2.2534 REMARK 3 L33: 3.7066 L12: 1.1824 REMARK 3 L13: -1.5309 L23: 0.6436 REMARK 3 S TENSOR REMARK 3 S11: 0.1182 S12: -0.1278 S13: -0.1652 REMARK 3 S21: 0.3804 S22: -0.3762 S23: -0.2347 REMARK 3 S31: 0.6517 S32: -0.8418 S33: 0.2000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RIDING HYDROGENS WERE USED IN REMARK 3 REFINEMENT AMINO ACIDS 209-240 (NEVHNPVAKKSASSSDTTPTPSKKGKGITGSS) REMARK 3 AND 266-270 (TKSPS) ARE DISORDERED WERE NOT MODELLED OWING TO REMARK 3 INSUFFICIENT ELECTRON DENSITY. REMARK 4 REMARK 4 2XB0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-APR-10. REMARK 100 THE DEPOSITION ID IS D_1290043078. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-SEP-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9775 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22943 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 49.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 9.700 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.9 REMARK 200 DATA REDUNDANCY IN SHELL : 9.40 REMARK 200 R MERGE FOR SHELL (I) : 0.82000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS, PH 8.5, 28% PEG 4K, 0.35 M REMARK 280 MGCL2, PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.72500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.25500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.56000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.25500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.72500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.56000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN X 209 REMARK 465 GLU X 210 REMARK 465 VAL X 211 REMARK 465 HIS X 212 REMARK 465 ASN X 213 REMARK 465 PRO X 214 REMARK 465 VAL X 215 REMARK 465 ALA X 216 REMARK 465 LYS X 217 REMARK 465 LYS X 218 REMARK 465 SER X 219 REMARK 465 ALA X 220 REMARK 465 SER X 221 REMARK 465 SER X 222 REMARK 465 SER X 223 REMARK 465 ASP X 224 REMARK 465 THR X 225 REMARK 465 THR X 226 REMARK 465 PRO X 227 REMARK 465 THR X 228 REMARK 465 PRO X 229 REMARK 465 SER X 230 REMARK 465 LYS X 231 REMARK 465 LYS X 232 REMARK 465 GLY X 233 REMARK 465 LYS X 234 REMARK 465 GLY X 235 REMARK 465 ILE X 236 REMARK 465 THR X 237 REMARK 465 GLY X 238 REMARK 465 SER X 239 REMARK 465 SER X 240 REMARK 465 THR X 266 REMARK 465 LYS X 267 REMARK 465 SER X 268 REMARK 465 PRO X 269 REMARK 465 SER X 270 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU X 43 CD OE1 OE2 REMARK 470 GLU X 62 CG CD OE1 OE2 REMARK 470 LYS X 65 CD CE NZ REMARK 470 LYS X 76 CD CE NZ REMARK 470 GLU X 93 CB CG CD OE1 OE2 REMARK 470 LYS X 97 CD CE NZ REMARK 470 ARG X 109 CZ NH1 NH2 REMARK 470 LYS X 111 CD CE NZ REMARK 470 LYS X 122 CD CE NZ REMARK 470 LYS X 241 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR X 255 CD1 TYR X 255 CE1 0.091 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP X 254 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN X 94 61.53 -151.98 REMARK 500 PHE X 118 -88.42 -110.46 REMARK 500 LYS X 119 59.13 -119.21 REMARK 500 ASP X 150 92.60 -161.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL X 1266 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL X 1267 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL X 1268 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL X 1269 REMARK 999 REMARK 999 SEQUENCE REMARK 999 PARTIAL SEQUENCE (AA 1009-1274) CORRESPONDING TO THE DNA- REMARK 999 BINDING DOMAIN OF YEAST CHD1. FIRST FOUR RESIDUES (GPLG) REMARK 999 ARE NON-NATIVE AND ARE LEFT FROM CLEAVAGE OF THE GST-TAG REMARK 999 WITH PRESCISSION PROTEASE. DBREF 2XB0 X 5 270 UNP P32657 CHD1_YEAST 1009 1274 SEQADV 2XB0 GLY X 1 UNP P32657 EXPRESSION TAG SEQADV 2XB0 PRO X 2 UNP P32657 EXPRESSION TAG SEQADV 2XB0 LEU X 3 UNP P32657 EXPRESSION TAG SEQADV 2XB0 GLY X 4 UNP P32657 EXPRESSION TAG SEQRES 1 X 270 GLY PRO LEU GLY SER ILE GLY GLU SER GLU VAL ARG ALA SEQRES 2 X 270 LEU TYR LYS ALA ILE LEU LYS PHE GLY ASN LEU LYS GLU SEQRES 3 X 270 ILE LEU ASP GLU LEU ILE ALA ASP GLY THR LEU PRO VAL SEQRES 4 X 270 LYS SER PHE GLU LYS TYR GLY GLU THR TYR ASP GLU MET SEQRES 5 X 270 MET GLU ALA ALA LYS ASP CYS VAL HIS GLU GLU GLU LYS SEQRES 6 X 270 ASN ARG LYS GLU ILE LEU GLU LYS LEU GLU LYS HIS ALA SEQRES 7 X 270 THR ALA TYR ARG ALA LYS LEU LYS SER GLY GLU ILE LYS SEQRES 8 X 270 ALA GLU ASN GLN PRO LYS ASP ASN PRO LEU THR ARG LEU SEQRES 9 X 270 SER LEU LYS LYS ARG GLU LYS LYS ALA VAL LEU PHE ASN SEQRES 10 X 270 PHE LYS GLY VAL LYS SER LEU ASN ALA GLU SER LEU LEU SEQRES 11 X 270 SER ARG VAL GLU ASP LEU LYS TYR LEU LYS ASN LEU ILE SEQRES 12 X 270 ASN SER ASN TYR LYS ASP ASP PRO LEU LYS PHE SER LEU SEQRES 13 X 270 GLY ASN ASN THR PRO LYS PRO VAL GLN ASN TRP SER SER SEQRES 14 X 270 ASN TRP THR LYS GLU GLU ASP GLU LYS LEU LEU ILE GLY SEQRES 15 X 270 VAL PHE LYS TYR GLY TYR GLY SER TRP THR GLN ILE ARG SEQRES 16 X 270 ASP ASP PRO PHE LEU GLY ILE THR ASP LYS ILE PHE LEU SEQRES 17 X 270 ASN GLU VAL HIS ASN PRO VAL ALA LYS LYS SER ALA SER SEQRES 18 X 270 SER SER ASP THR THR PRO THR PRO SER LYS LYS GLY LYS SEQRES 19 X 270 GLY ILE THR GLY SER SER LYS LYS VAL PRO GLY ALA ILE SEQRES 20 X 270 HIS LEU GLY ARG ARG VAL ASP TYR LEU LEU SER PHE LEU SEQRES 21 X 270 ARG GLY GLY LEU ASN THR LYS SER PRO SER HET GOL X1266 14 HET CL X1267 1 HET CL X1268 1 HET GOL X1269 14 HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL 2(C3 H8 O3) FORMUL 3 CL 2(CL 1-) FORMUL 6 HOH *109(H2 O) HELIX 1 1 GLY X 7 GLY X 22 1 16 HELIX 2 2 ILE X 27 ASP X 34 1 8 HELIX 3 3 SER X 41 GLY X 88 1 48 HELIX 4 4 ASN X 99 ARG X 109 1 11 HELIX 5 5 ALA X 126 TYR X 147 1 22 HELIX 6 6 ASP X 150 PHE X 154 5 5 HELIX 7 7 THR X 172 GLY X 187 1 16 HELIX 8 8 SER X 190 ASP X 197 1 8 HELIX 9 9 ILE X 202 ILE X 206 5 5 HELIX 10 10 GLY X 245 ARG X 261 1 17 SHEET 1 XA 2 LEU X 115 PHE X 116 0 SHEET 2 XA 2 LEU X 124 ASN X 125 -1 O LEU X 124 N PHE X 116 CISPEP 1 VAL X 243 PRO X 244 0 8.21 SITE 1 AC1 3 LYS X 112 ALA X 113 LEU X 115 SITE 1 AC2 3 SER X 190 GLN X 193 HOH X2029 SITE 1 AC3 4 GLY X 1 LEU X 3 SER X 41 LYS X 44 SITE 1 AC4 6 GLY X 7 GLU X 8 SER X 9 LYS X 91 SITE 2 AC4 6 ALA X 92 GLU X 93 CRYST1 37.450 91.120 98.510 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026702 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010975 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010151 0.00000