HEADER TRANSFERASE/DNA 20-APR-10 2XCA TITLE TERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE, 7,8- TITLE 2 DIHYDRO-8-OXODEOXYGUANINE MODIFIED DNA AND DGTP - MAGNESIUM FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE IV; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: POL IV; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*DOC)-3'; COMPND 9 CHAIN: P; COMPND 10 SYNONYM: 13-MER PRIMER; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: 5'-D(*TP*CP*AP*CP*8OGP*GP*AP*AP*TP*CP*CP*TP*TP*CP* COMPND 14 CP*CP*CP*C)-3'; COMPND 15 CHAIN: T; COMPND 16 SYNONYM: 18-MER TEMPLATE; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; SOURCE 3 ORGANISM_TAXID: 273057; SOURCE 4 STRAIN: P2; SOURCE 5 GENE: DPO4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B/DPO4-NHIS; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_TAXID: 32630; SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 ORGANISM_TAXID: 32630 KEYWDS TRANSFERASE-DNA COMPLEX, TRANSLESION NUCLEOTIDYLTRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.IRIMIA,M.EGLI REVDAT 3 20-DEC-23 2XCA 1 REMARK LINK REVDAT 2 18-APR-12 2XCA 1 JRNL REMARK VERSN REVDAT 1 08-SEP-10 2XCA 0 JRNL AUTH A.IRIMIA,L.V.LOUKACHEVITCH,R.L.EOFF,F.P.GUENGERICH,M.EGLI JRNL TITL METAL ION DEPENDENCE OF THE ACTIVE SITE CONFORMATION OF THE JRNL TITL 2 TRANS-LESION DNA POLYMERASE DPO4 FROM SULFOLOBUS JRNL TITL 3 SOLFATARICUS JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 66 1013 2010 JRNL REFN ESSN 1744-3091 JRNL PMID 20823515 JRNL DOI 10.1107/S1744309110029374 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.13 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1064868.770 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 18457 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 900 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.009 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2844 REMARK 3 BIN R VALUE (WORKING SET) : 0.2980 REMARK 3 BIN FREE R VALUE : 0.3670 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.40 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 161 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.029 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2744 REMARK 3 NUCLEIC ACID ATOMS : 608 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 192 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 46.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.73000 REMARK 3 B22 (A**2) : -0.90000 REMARK 3 B33 (A**2) : -3.82000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.32 REMARK 3 ESD FROM SIGMAA (A) : 0.28 REMARK 3 LOW RESOLUTION CUTOFF (A) : 50.0 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.41 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.38 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.550 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.340 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.240 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.930 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.010 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 62.52 REMARK 3 REMARK 3 NCS MODEL : NONE REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA1.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : DGTP.PARAM REMARK 3 PARAMETER FILE 5 : WATER.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA1.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : DGTP.TOP REMARK 3 TOPOLOGY FILE 5 : WATER.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2XCA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-APR-10. REMARK 100 THE DEPOSITION ID IS D_1290043613. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-FEB-07 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 5ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18457 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 29.130 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.49000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 2C22 REMARK 200 REMARK 200 REMARK: THE MODEL POSITION WAS OPTIMIZED BY SEVERAL ROUNDS OF REMARK 200 RIGID BODY REFINEMENT. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: RESERVOIR: 12-20% POLYETHYLENE GLYCOL REMARK 280 3350, 0.2 M AMMONIUM ACETATE, 0.1 M MAGNESIUM ACETATE, 20 MM REMARK 280 TRIS (PH 7.5) DROP: 10MM TRIS-CL PH 7.5, 30 MM NACL, 0.5MM DGTP, REMARK 280 2.5MM MGCL2, 6-10% POLYETHYLENE GLYCOL 3350 0.1M AMMONIUM REMARK 280 ACETATE, 0.05M MAGNESIUM ACETATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 47.22150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.95450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 47.22150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.95450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -70.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P, T REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 ALA A 343 REMARK 465 ILE A 344 REMARK 465 GLY A 345 REMARK 465 LEU A 346 REMARK 465 ASP A 347 REMARK 465 LYS A 348 REMARK 465 PHE A 349 REMARK 465 PHE A 350 REMARK 465 ASP A 351 REMARK 465 THR A 352 REMARK 465 DT T 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 342 CA C O CB CG CD OE1 REMARK 470 GLU A 342 OE2 REMARK 470 DC T 2 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 186 O HOH A 2097 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 238 NH1 - CZ - NH2 ANGL. DEV. = -7.6 DEGREES REMARK 500 ARG A 238 NE - CZ - NH2 ANGL. DEV. = 4.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 10 51.39 21.98 REMARK 500 ASN A 20 68.15 -166.12 REMARK 500 PRO A 21 -26.49 -39.83 REMARK 500 PHE A 37 -166.01 -173.31 REMARK 500 ASP A 39 25.83 87.39 REMARK 500 ARG A 77 71.75 -116.30 REMARK 500 GLU A 94 4.84 -61.33 REMARK 500 SER A 96 138.68 179.90 REMARK 500 ASP A 105 24.15 -143.16 REMARK 500 ASN A 161 57.78 35.10 REMARK 500 ASN A 234 27.03 -141.74 REMARK 500 ASP A 277 -103.68 66.98 REMARK 500 ASP A 292 33.40 -85.03 REMARK 500 LEU A 293 26.72 49.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2004 DISTANCE = 6.18 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A3000 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 7 OD1 REMARK 620 2 ASP A 105 OD2 89.0 REMARK 620 3 ASP A 105 OD1 117.7 49.2 REMARK 620 4 GLU A 106 OE2 94.8 148.4 102.7 REMARK 620 5 DGT A1000 O1A 101.2 59.0 93.2 149.1 REMARK 620 6 HOH A2006 O 77.2 131.0 164.1 80.3 77.7 REMARK 620 7 HOH A2070 O 159.5 111.1 80.4 70.6 86.4 86.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A3001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 7 OD2 REMARK 620 2 PHE A 8 O 105.0 REMARK 620 3 ASP A 105 OD2 96.3 91.4 REMARK 620 4 DGT A1000 O2G 78.6 125.1 143.3 REMARK 620 5 DGT A1000 O2B 156.1 97.7 90.4 82.3 REMARK 620 6 DGT A1000 O1A 87.0 160.1 71.2 72.3 73.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A3002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 294 OD1 REMARK 620 2 HOH A2137 O 84.7 REMARK 620 3 HOH A2138 O 114.2 70.8 REMARK 620 4 HOH A2139 O 87.4 168.7 105.3 REMARK 620 5 DA P 10 OP2 122.0 86.8 116.6 104.3 REMARK 620 6 HOH P2013 O 61.7 94.7 165.5 88.7 62.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A3003 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2039 O REMARK 620 2 HOH A2095 O 62.9 REMARK 620 3 HOH A2097 O 98.1 127.5 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DGT A 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 3000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 3001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 3002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 3003 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ASL RELATED DB: PDB REMARK 900 OXOG-MODIFIED POSTINSERTION BINARY COMPLEX REMARK 900 RELATED ID: 1S0M RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A BENZO[A]PYRENE DIOL EPOXIDE ADDUCTIN A REMARK 900 TERNARY COMPLEX WITH A DNA POLYMERASE REMARK 900 RELATED ID: 2JEG RELATED DB: PDB REMARK 900 THE MOLECULAR BASIS OF SELECTIVITY OF NUCLEOSIDE TRIPHOSPHATE REMARK 900 INCORPORATION OPPOSITE O6-BENZYLGUANINE BY SULFOLOBUS SOLFATARICUS REMARK 900 DNA POLYMERASE IV: STEADY-STATE AND PRE- STEADY-STATE KINETICS AND REMARK 900 X-RAY CRYSTALLOGRAPHY OF CORRECT AND INCORRECT PAIRING REMARK 900 RELATED ID: 1RYS RELATED DB: PDB REMARK 900 REPLICATION OF A CIS-SYN THYMINE DIMER AT ATOMIC RESOLUTION REMARK 900 RELATED ID: 2V4S RELATED DB: PDB REMARK 900 Y-FAMILY DNA POLYMERASE DPO4 BYPASSING N2- NAPHTHYL-GUANINE ADDUCT REMARK 900 IN SYN ORIENTATION REMARK 900 RELATED ID: 2J6T RELATED DB: PDB REMARK 900 TERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE, O6- REMARK 900 METHYLGUANINE MODIFIED DNA, AND DATP. REMARK 900 RELATED ID: 2W9B RELATED DB: PDB REMARK 900 BINARY COMPLEX OF DPO4 BOUND TO N2,N2- DIMETHYL-DEOXYGUANOSINE REMARK 900 MODIFIED DNA REMARK 900 RELATED ID: 1N56 RELATED DB: PDB REMARK 900 Y-FAMILY DNA POLYMERASE DPO4 IN COMPLEX WITH DNA CONTAININGABASIC REMARK 900 LESION REMARK 900 RELATED ID: 1JX4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A Y-FAMILY DNA POLYMERASE IN A TERNARYCOMPLEX REMARK 900 WITH DNA SUBSTRATES AND AN INCOMING NUCLEOTIDE REMARK 900 RELATED ID: 2ATL RELATED DB: PDB REMARK 900 UNMODIFIED INSERTION TERNARY COMPLEX REMARK 900 RELATED ID: 2C22 RELATED DB: PDB REMARK 900 EFFICIENT AND HIGH FIDELITY INCORPORATION OF DCTP OPPOSITE 7,8- REMARK 900 DIHYDRO-8- OXODEOXYGUANOSINE BY SULFOLOBUS SOLFATARICUS DNA REMARK 900 POLYMERASE DPO4 REMARK 900 RELATED ID: 2VA2 RELATED DB: PDB REMARK 900 COMPLEX STRUCTURE OF SULFOLOBUS SOLFATARICUS DPO4 AND DNA DUPLEX REMARK 900 CONTAINING A HYDROPHOBIC THYMINE ISOSTERE 2,4-DIFLUOROTOLUENE REMARK 900 NUCLEOTIDE IN THE TEMPLATE STRAND REMARK 900 RELATED ID: 1S97 RELATED DB: PDB REMARK 900 DPO4 WITH GT MISMATCH REMARK 900 RELATED ID: 2AGQ RELATED DB: PDB REMARK 900 FIDELITY OF DPO4: EFFECT OF METAL IONS, NUCLEOTIDESELECTION AND REMARK 900 PYROPHOSPHOROLYSIS REMARK 900 RELATED ID: 2JEJ RELATED DB: PDB REMARK 900 THE MOLECULAR BASIS OF SELECTIVITY OF NUCLEOSIDE TRIPHOSPHATE REMARK 900 INCORPORATION OPPOSITE O6-BENZYLGUANINE BY SULFOLOBUS SOLFATARICUS REMARK 900 DNA POLYMERASE IV: STEADY-STATE AND PRE- STEADY-STATE KINETICS AND REMARK 900 X-RAY CRYSTALLOGRAPHY OF CORRECT AND INCORRECT PAIRING REMARK 900 RELATED ID: 2W9C RELATED DB: PDB REMARK 900 TERNARY COMPLEX OF DPO4 BOUND TO N2,N2- DIMETHYL-DEOXYGUANOSINE REMARK 900 MODIFIED DNA WITH INCOMING DTTP REMARK 900 RELATED ID: 2ASJ RELATED DB: PDB REMARK 900 OXOG-MODIFIED PREINSERTION BINARY COMPLEX REMARK 900 RELATED ID: 2AGO RELATED DB: PDB REMARK 900 FIDELITY OF DPO4: EFFECT OF METAL IONS, NUCLEOTIDESELECTION AND REMARK 900 PYROPHOSPHOROLYSIS REMARK 900 RELATED ID: 2W9A RELATED DB: PDB REMARK 900 TERNARY COMPLEX OF DPO4 BOUND TO N2,N2- DIMETHYL-DEOXYGUANOSINE REMARK 900 MODIFIED DNA WITH INCOMING DGTP REMARK 900 RELATED ID: 2ASD RELATED DB: PDB REMARK 900 OXOG-MODIFIED INSERTION TERNARY COMPLEX REMARK 900 RELATED ID: 1JXL RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A Y-FAMILY DNA POLYMERASE IN A TERNARYCOMPLEX REMARK 900 WITH DNA SUBSTRATES AND AN INCOMING NUCLEOTIDE REMARK 900 RELATED ID: 1N48 RELATED DB: PDB REMARK 900 Y-FAMILY DNA POLYMERASE DPO4 IN COMPLEX WITH DNA CONTAININGABASIC REMARK 900 LESION REMARK 900 RELATED ID: 2BQ3 RELATED DB: PDB REMARK 900 DNA ADDUCT BYPASS POLYMERIZATION BY SULFOLOBUS SOLFATARICUS DPO4. REMARK 900 ANALYSIS AND CRYSTAL STRUCTURES OF MULTIPLE BASE-PAIR SUBSTITUTION REMARK 900 AND FRAMESHIFT PRODUCTS WITH THE ADDUCT 1 ,N2-ETHENOGUANINE REMARK 900 RELATED ID: 2UVU RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURES OF MUTANT DPO4 DNA POLYMERASES WITH 8-OXOG REMARK 900 CONTAINING DNA TEMPLATE-PRIMER CONSTRUCTS REMARK 900 RELATED ID: 2J6U RELATED DB: PDB REMARK 900 TERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE, O6- REMARK 900 METHYLGUANINE MODIFIED DNA, AND DGTP. REMARK 900 RELATED ID: 2AGP RELATED DB: PDB REMARK 900 FIDELITY OF DPO4: EFFECT OF METAL IONS, NUCLEOTIDESELECTION AND REMARK 900 PYROPHOSPHOROLYSIS REMARK 900 RELATED ID: 2C2R RELATED DB: PDB REMARK 900 EFFICIENT AND HIGH FIDELITY INCORPORATION OF DCTP OPPOSITE 7,8- REMARK 900 DIHYDRO-8- OXODEOXYGUANOSINE BY SULFOLOBUS SOLFATARICUS DNA REMARK 900 POLYMERASE DPO4 REMARK 900 RELATED ID: 1S0N RELATED DB: PDB REMARK 900 SNAPSHOTS OF REPLICATION THROUGH AN ABASIC LESION:STRUCTURAL BASIS REMARK 900 FOR BASE SUBSTITUTION AND FRAMESHIFT REMARK 900 RELATED ID: 1S0O RELATED DB: PDB REMARK 900 SNAPSHOTS OF REPLICATION THROUGH AN ABASIC LESION:STRUCTURAL BASIS REMARK 900 FOR BASE SUBSTITUTION AND FRAMESHIFT REMARK 900 RELATED ID: 2JEF RELATED DB: PDB REMARK 900 THE MOLECULAR BASIS OF SELECTIVITY OF NUCLEOTIDE TRIPHOSPHATE REMARK 900 INCORPORATION OPPOSITE O6-BENZYLGUANINE BY SULFOLOBUS SOLFATARICUS REMARK 900 DNA POLYMERASE IV: STEADY-STATE AND PRE- STEADY-STATE AND X-RAY REMARK 900 CRYSTALLOGRAPHY OF CORRECT AND INCORRECT PAIRING REMARK 900 RELATED ID: 2W8L RELATED DB: PDB REMARK 900 Y-FAMILY DNA POLYMERASE DPO4 BYPASSING N2- NAPHTHYL-GUANINE ADDUCT REMARK 900 IN ANTI ORIENTATION REMARK 900 RELATED ID: 2UVW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURES OF MUTANT DPO4 DNA POLYMERASES WITH 8-OXOG REMARK 900 CONTAINING DNA TEMPLATE-PRIMER CONSTRUCTS REMARK 900 RELATED ID: 2BQR RELATED DB: PDB REMARK 900 DNA ADDUCT BYPASS POLYMERIZATION BY SULFOLOBUS SOLFATARICUS DPO4. REMARK 900 ANALYSIS AND CRYSTAL STRUCTURES OF MULTIPLE BASE-PAIR SUBSTITUTION REMARK 900 AND FRAMESHIFT PRODUCTS WITH THE ADDUCT 1 ,N2-ETHENOGUANINE REMARK 900 RELATED ID: 2JEI RELATED DB: PDB REMARK 900 THE MOLECULAR BASIS OF SELECTIVITY OF NUCLEOSIDE TRIPHOSPHATE REMARK 900 INCORPORATION OPPOSITE O6-BENZYLGUANINE BY SULFOLOBUS SOLFATARICUS REMARK 900 DNA POLYMERASE IV: STEADY-STATE AND PRE- STEADY-STATE KINETICS AND REMARK 900 X-RAY CRYSTALLOGRAPHY OF CORRECT AND INCORRECT PAIRING REMARK 900 RELATED ID: 1S9F RELATED DB: PDB REMARK 900 DPO WITH AT MATCHED REMARK 900 RELATED ID: 2AU0 RELATED DB: PDB REMARK 900 UNMODIFIED PREINSERTION BINARY COMPLEX REMARK 900 RELATED ID: 2BQU RELATED DB: PDB REMARK 900 DNA ADDUCT BYPASS POLYMERIZATION BY SULFOLOBUS SOLFATARICUS DPO4. REMARK 900 ANALYSIS AND CRYSTAL STRUCTURES OF MULTIPLE BASE-PAIR SUBSTITUTION REMARK 900 AND FRAMESHIFT PRODUCTS WITH THE ADDUCT 1 ,N2-ETHENOGUANINE REMARK 900 RELATED ID: 2C28 RELATED DB: PDB REMARK 900 EFFICIENT AND HIGH FIDELITY INCORPORATION OF DCTP OPPOSITE 7,8- REMARK 900 DIHYDRO-8- OXODEOXYGUANOSINE BY SULFOLOBUS SOLFATARICUS DNA REMARK 900 POLYMERASE DPO4 REMARK 900 RELATED ID: 2V9W RELATED DB: PDB REMARK 900 COMPLEX STRUCTURE OF SULFOLOBUS SOLFATARICUS DPO4 AND DNA DUPLEX REMARK 900 CONTAINING A HYDROPHOBIC THYMINE ISOSTERE 2,4-DIFLUOROTOLUENE REMARK 900 NUCLEOTIDE IN THE TEMPLATE STRAND REMARK 900 RELATED ID: 2V4R RELATED DB: PDB REMARK 900 NON-PRODUCTIVE COMPLEX OF THE Y-FAMILY DNA POLYMERASE DPO4 WITH REMARK 900 DGTP SKIPPING THE M1DG ADDUCT TO PAIR WITH THE NEXT TEMPLATE REMARK 900 CYTOSINE REMARK 900 RELATED ID: 2C2E RELATED DB: PDB REMARK 900 EFFICIENT AND HIGH FIDELITY INCORPORATION OF DCTP OPPOSITE 7,8- REMARK 900 DIHYDRO-8- OXODEOXYGUANOSINE BY SULFOLOBUS SOLFATARICUS DNA REMARK 900 POLYMERASE DPO4 REMARK 900 RELATED ID: 1RYR RELATED DB: PDB REMARK 900 REPLICATION OF A CIS-SYN THYMINE DIMER AT ATOMIC RESOLUTION REMARK 900 RELATED ID: 2UVV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURES OF MUTANT DPO4 DNA POLYMERASES WITH 8-OXOG REMARK 900 CONTAINING DNA TEMPLATE-PRIMER CONSTRUCTS REMARK 900 RELATED ID: 2C2D RELATED DB: PDB REMARK 900 EFFICIENT AND HIGH FIDELITY INCORPORATION OF DCTP OPPOSITE 7,8- REMARK 900 DIHYDRO-8- OXODEOXYGUANOSINE BY SULFOLOBUS SOLFATARICUS DNA REMARK 900 POLYMERASE DPO4 REMARK 900 RELATED ID: 2V4Q RELATED DB: PDB REMARK 900 POST-INSERTION COMPLEX OF THE Y-FAMILY DNA POLYMERASE DPO4 WITH REMARK 900 M1DG CONTAINING TEMPLATE DNA REMARK 900 RELATED ID: 2BR0 RELATED DB: PDB REMARK 900 DNA ADDUCT BYPASS POLYMERIZATION BY SULFOLOBUS SOLFATARICUS DPO4. REMARK 900 ANALYSIS AND CRYSTAL STRUCTURES OF MULTIPLE BASE-PAIR SUBSTITUTION REMARK 900 AND FRAMESHIFT PRODUCTS WITH THE ADDUCT 1 ,N2-ETHENOGUANINE REMARK 900 RELATED ID: 1S10 RELATED DB: PDB REMARK 900 SNAPSHOTS OF REPLICATION THROUGH AN ABASIC LESION:STRUCTURAL BASIS REMARK 900 FOR BASE SUBSTITUTION AND FRAMESHIFT REMARK 900 RELATED ID: 2J6S RELATED DB: PDB REMARK 900 TERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE, O6- REMARK 900 METHYLGUANINE MODIFIED DNA, AND DATP. REMARK 900 RELATED ID: 2UVR RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURES OF MUTANT DPO4 DNA POLYMERASES WITH 8-OXOG REMARK 900 CONTAINING DNA TEMPLATE-PRIMER CONSTRUCTS REMARK 900 RELATED ID: 2VA3 RELATED DB: PDB REMARK 900 COMPLEX STRUCTURE OF SULFOLOBUS SOLFATARICUS DPO4 AND DNA DUPLEX REMARK 900 CONTAINING A HYDROPHOBIC THYMINE ISOSTERE 2,4-DIFLUOROTOLUENE REMARK 900 NUCLEOTIDE IN THE TEMPLATE STRAND REMARK 900 RELATED ID: 2W8K RELATED DB: PDB REMARK 900 Y-FAMILY DNA POLYMERASE DPO4 BYPASSING N2- NAPHTHYL-GUANINE ADDUCT REMARK 900 IN SYN ORIENTATION REMARK 900 RELATED ID: 2V4T RELATED DB: PDB REMARK 900 Y-FAMILY DNA POLYMERASE DPO4 BYPASSING N2- NAPHTHYL-GUANINE ADDUCT REMARK 900 IN ANTI ORIENTATION REMARK 900 RELATED ID: 2XC9 RELATED DB: PDB REMARK 900 BINARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE AND 1, REMARK 900 N2-ETHENOGUANINE MODIFIED DNA, MAGNESIUM FORM REMARK 900 RELATED ID: 2XCP RELATED DB: PDB REMARK 900 TERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE, 7,8- REMARK 900 DIHYDRO-8- OXODEOXYGUANINE MODIFIED DNA AND DCTP - MAGNESIUM FORM REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE N-TERMINAL 6 RESIDUES HIS TAG ARE DISORDERED AND REMARK 999 MISSING FROM THE STRUCTURE. THE C-TERMINAL 11 RESIDUES ARE REMARK 999 DISORDERED AND ABSENT FROM THE STRUCTURE. DBREF 2XCA A 1 352 UNP Q97W02 DPO42_SULSO 1 352 DBREF 2XCA P 1 13 PDB 2XCA 2XCA 1 13 DBREF 2XCA T 1 18 PDB 2XCA 2XCA 1 18 SEQADV 2XCA HIS A -5 UNP Q97W02 EXPRESSION TAG SEQADV 2XCA HIS A -4 UNP Q97W02 EXPRESSION TAG SEQADV 2XCA HIS A -3 UNP Q97W02 EXPRESSION TAG SEQADV 2XCA HIS A -2 UNP Q97W02 EXPRESSION TAG SEQADV 2XCA HIS A -1 UNP Q97W02 EXPRESSION TAG SEQADV 2XCA HIS A 0 UNP Q97W02 EXPRESSION TAG SEQRES 1 A 358 HIS HIS HIS HIS HIS HIS MET ILE VAL LEU PHE VAL ASP SEQRES 2 A 358 PHE ASP TYR PHE TYR ALA GLN VAL GLU GLU VAL LEU ASN SEQRES 3 A 358 PRO SER LEU LYS GLY LYS PRO VAL VAL VAL CYS VAL PHE SEQRES 4 A 358 SER GLY ARG PHE GLU ASP SER GLY ALA VAL ALA THR ALA SEQRES 5 A 358 ASN TYR GLU ALA ARG LYS PHE GLY VAL LYS ALA GLY ILE SEQRES 6 A 358 PRO ILE VAL GLU ALA LYS LYS ILE LEU PRO ASN ALA VAL SEQRES 7 A 358 TYR LEU PRO MET ARG LYS GLU VAL TYR GLN GLN VAL SER SEQRES 8 A 358 SER ARG ILE MET ASN LEU LEU ARG GLU TYR SER GLU LYS SEQRES 9 A 358 ILE GLU ILE ALA SER ILE ASP GLU ALA TYR LEU ASP ILE SEQRES 10 A 358 SER ASP LYS VAL ARG ASP TYR ARG GLU ALA TYR ASN LEU SEQRES 11 A 358 GLY LEU GLU ILE LYS ASN LYS ILE LEU GLU LYS GLU LYS SEQRES 12 A 358 ILE THR VAL THR VAL GLY ILE SER LYS ASN LYS VAL PHE SEQRES 13 A 358 ALA LYS ILE ALA ALA ASP MET ALA LYS PRO ASN GLY ILE SEQRES 14 A 358 LYS VAL ILE ASP ASP GLU GLU VAL LYS ARG LEU ILE ARG SEQRES 15 A 358 GLU LEU ASP ILE ALA ASP VAL PRO GLY ILE GLY ASN ILE SEQRES 16 A 358 THR ALA GLU LYS LEU LYS LYS LEU GLY ILE ASN LYS LEU SEQRES 17 A 358 VAL ASP THR LEU SER ILE GLU PHE ASP LYS LEU LYS GLY SEQRES 18 A 358 MET ILE GLY GLU ALA LYS ALA LYS TYR LEU ILE SER LEU SEQRES 19 A 358 ALA ARG ASP GLU TYR ASN GLU PRO ILE ARG THR ARG VAL SEQRES 20 A 358 ARG LYS SER ILE GLY ARG ILE VAL THR MET LYS ARG ASN SEQRES 21 A 358 SER ARG ASN LEU GLU GLU ILE LYS PRO TYR LEU PHE ARG SEQRES 22 A 358 ALA ILE GLU GLU SER TYR TYR LYS LEU ASP LYS ARG ILE SEQRES 23 A 358 PRO LYS ALA ILE HIS VAL VAL ALA VAL THR GLU ASP LEU SEQRES 24 A 358 ASP ILE VAL SER ARG GLY ARG THR PHE PRO HIS GLY ILE SEQRES 25 A 358 SER LYS GLU THR ALA TYR SER GLU SER VAL LYS LEU LEU SEQRES 26 A 358 GLN LYS ILE LEU GLU GLU ASP GLU ARG LYS ILE ARG ARG SEQRES 27 A 358 ILE GLY VAL ARG PHE SER LYS PHE ILE GLU ALA ILE GLY SEQRES 28 A 358 LEU ASP LYS PHE PHE ASP THR SEQRES 1 P 13 DG DG DG DG DG DA DA DG DG DA DT DT DOC SEQRES 1 T 18 DT DC DA DC 8OG DG DA DA DT DC DC DT DT SEQRES 2 T 18 DC DC DC DC DC MODRES 2XCA DOC P 13 DC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE MODRES 2XCA 8OG T 5 DG HET DOC P 13 18 HET 8OG T 5 23 HET DGT A1000 31 HET MG A3000 1 HET MG A3001 1 HET MG A3002 1 HET MG A3003 1 HETNAM DOC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE HETNAM 8OG 8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE HETNAM DGT 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETSYN 8OG 8-OXO-7,8-DIHYDRO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE FORMUL 2 DOC C9 H14 N3 O6 P FORMUL 3 8OG C10 H14 N5 O8 P FORMUL 4 DGT C10 H16 N5 O13 P3 FORMUL 5 MG 4(MG 2+) FORMUL 9 HOH *192(H2 O) HELIX 1 1 TYR A 10 LEU A 19 1 10 HELIX 2 2 ASN A 20 LYS A 24 5 5 HELIX 3 3 ASN A 47 PHE A 53 1 7 HELIX 4 4 PRO A 60 LEU A 68 1 9 HELIX 5 5 ARG A 77 GLU A 94 1 18 HELIX 6 6 ASP A 117 LYS A 137 1 21 HELIX 7 7 ASN A 147 LYS A 159 1 13 HELIX 8 8 ASP A 167 LEU A 178 1 12 HELIX 9 9 ILE A 180 VAL A 183 5 4 HELIX 10 10 GLY A 187 LEU A 197 1 11 HELIX 11 11 LEU A 202 ILE A 208 5 7 HELIX 12 12 GLU A 209 ARG A 230 1 22 HELIX 13 13 ASN A 257 ASP A 277 1 21 HELIX 14 14 SER A 307 ASP A 326 1 20 SHEET 1 AA 5 ILE A 99 SER A 103 0 SHEET 2 AA 5 GLU A 106 ASP A 110 -1 O GLU A 106 N ALA A 102 SHEET 3 AA 5 VAL A 3 PHE A 8 -1 O LEU A 4 N LEU A 109 SHEET 4 AA 5 VAL A 140 SER A 145 -1 O THR A 141 N ASP A 7 SHEET 5 AA 5 ILE A 163 VAL A 165 1 O LYS A 164 N ILE A 144 SHEET 1 AB 3 GLY A 41 ALA A 46 0 SHEET 2 AB 3 VAL A 28 PHE A 33 -1 O VAL A 30 N ALA A 44 SHEET 3 AB 3 VAL A 72 PRO A 75 1 O VAL A 72 N VAL A 29 SHEET 1 AC 4 SER A 244 SER A 255 0 SHEET 2 AC 4 ILE A 330 PHE A 340 -1 O ILE A 330 N SER A 255 SHEET 3 AC 4 PRO A 281 THR A 290 -1 N LYS A 282 O SER A 338 SHEET 4 AC 4 ILE A 295 THR A 301 -1 O VAL A 296 N ALA A 288 LINK O3' DT P 12 P DOC P 13 1555 1555 1.61 LINK O3' DC T 4 P 8OG T 5 1555 1555 1.60 LINK O3' 8OG T 5 P DG T 6 1555 1555 1.61 LINK OD1 ASP A 7 MG MG A3000 1555 1555 2.14 LINK OD2 ASP A 7 MG MG A3001 1555 1555 2.23 LINK O PHE A 8 MG MG A3001 1555 1555 2.03 LINK OD2 ASP A 105 MG MG A3000 1555 1555 2.90 LINK OD1 ASP A 105 MG MG A3000 1555 1555 2.09 LINK OD2 ASP A 105 MG MG A3001 1555 1555 2.34 LINK OE2 GLU A 106 MG MG A3000 1555 1555 2.27 LINK OD1 ASP A 294 MG MG A3002 1555 1555 2.58 LINK O1A DGT A1000 MG MG A3000 1555 1555 2.44 LINK O2G DGT A1000 MG MG A3001 1555 1555 2.16 LINK O2B DGT A1000 MG MG A3001 1555 1555 2.15 LINK O1A DGT A1000 MG MG A3001 1555 1555 2.23 LINK O HOH A2006 MG MG A3000 1555 1555 2.24 LINK O HOH A2039 MG MG A3003 1555 1555 2.90 LINK O HOH A2070 MG MG A3000 1555 1555 2.30 LINK O HOH A2095 MG MG A3003 1555 1555 2.06 LINK O HOH A2097 MG MG A3003 1555 1555 2.08 LINK O HOH A2137 MG MG A3002 1555 1555 2.09 LINK O HOH A2138 MG MG A3002 1555 1555 2.35 LINK O HOH A2139 MG MG A3002 1555 1555 1.98 LINK MG MG A3002 OP2 DA P 10 1555 1555 2.52 LINK MG MG A3002 O HOH P2013 1555 1555 2.18 CISPEP 1 LYS A 159 PRO A 160 0 -0.27 SITE 1 AC1 22 ASP A 7 PHE A 8 ASP A 9 TYR A 10 SITE 2 AC1 22 PHE A 11 TYR A 12 ALA A 44 THR A 45 SITE 3 AC1 22 TYR A 48 ARG A 51 ASP A 105 LYS A 159 SITE 4 AC1 22 HOH A2006 HOH A2009 HOH A2070 HOH A2154 SITE 5 AC1 22 HOH A2155 HOH A2156 MG A3000 MG A3001 SITE 6 AC1 22 DC T 4 8OG T 5 SITE 1 AC2 7 ASP A 7 SER A 103 ASP A 105 GLU A 106 SITE 2 AC2 7 DGT A1000 HOH A2006 HOH A2070 SITE 1 AC3 5 ASP A 7 PHE A 8 ASP A 105 LYS A 159 SITE 2 AC3 5 DGT A1000 SITE 1 AC4 6 ASP A 294 HOH A2137 HOH A2138 HOH A2139 SITE 2 AC4 6 DA P 10 HOH P2013 SITE 1 AC5 8 ALA A 181 VAL A 183 ILE A 186 HOH A2039 SITE 2 AC5 8 HOH A2092 HOH A2095 HOH A2097 DOC P 13 CRYST1 94.443 103.909 52.707 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010588 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009624 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018973 0.00000