data_2XCB # _entry.id 2XCB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2XCB PDBE EBI-43653 WWPDB D_1290043653 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2XCC _pdbx_database_related.content_type unspecified _pdbx_database_related.details 'CRYSTAL STRUCTURE OF PCRH FROM PSEUDOMONAS AERUGINOSA' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2XCB _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2010-04-22 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Job, V.' 1 'Mattei, P.-J.' 2 'Lemaire, D.' 3 'Attree, I.' 4 'Dessen, A.' 5 # _citation.id primary _citation.title 'Structural Basis of Chaperone Recognition of Type III Secretion System Minor Translocator Proteins.' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 285 _citation.page_first 23224 _citation.page_last ? _citation.year 2010 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20385547 _citation.pdbx_database_id_DOI 10.1074/JBC.M110.111278 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Job, V.' 1 primary 'Mattei, P.-J.' 2 primary 'Lemaire, D.' 3 primary 'Attree, I.' 4 primary 'Dessen, A.' 5 # _cell.entry_id 2XCB _cell.length_a 44.370 _cell.length_b 97.720 _cell.length_c 73.590 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XCB _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'REGULATORY PROTEIN PCRH' 15486.300 2 ? ? 'RESIDUES 21-160' ? 2 polymer syn PEPD 1199.317 1 ? ? 'CHAPERONE BINDING DOMAIN, RESIDUES 47-56' ? 3 non-polymer syn 'NITRATE ION' 62.005 1 ? ? ? ? 4 water nat water 18.015 95 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 PCRH 2 POPD # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GSDGGTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGAL MDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVTARKDR ; ;GSDGGTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGAL MDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVTARKDR ; A,B ? 2 'polypeptide(L)' no no DRVELNAPRQ DRVELNAPRQ C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 ASP n 1 4 GLY n 1 5 GLY n 1 6 THR n 1 7 LEU n 1 8 ALA n 1 9 MET n 1 10 LEU n 1 11 ARG n 1 12 GLY n 1 13 LEU n 1 14 SER n 1 15 GLU n 1 16 ASP n 1 17 THR n 1 18 LEU n 1 19 GLU n 1 20 GLN n 1 21 LEU n 1 22 TYR n 1 23 ALA n 1 24 LEU n 1 25 GLY n 1 26 PHE n 1 27 ASN n 1 28 GLN n 1 29 TYR n 1 30 GLN n 1 31 ALA n 1 32 GLY n 1 33 LYS n 1 34 TRP n 1 35 ASP n 1 36 ASP n 1 37 ALA n 1 38 GLN n 1 39 LYS n 1 40 ILE n 1 41 PHE n 1 42 GLN n 1 43 ALA n 1 44 LEU n 1 45 CYS n 1 46 MET n 1 47 LEU n 1 48 ASP n 1 49 HIS n 1 50 TYR n 1 51 ASP n 1 52 ALA n 1 53 ARG n 1 54 TYR n 1 55 PHE n 1 56 LEU n 1 57 GLY n 1 58 LEU n 1 59 GLY n 1 60 ALA n 1 61 CYS n 1 62 ARG n 1 63 GLN n 1 64 SER n 1 65 LEU n 1 66 GLY n 1 67 LEU n 1 68 TYR n 1 69 GLU n 1 70 GLN n 1 71 ALA n 1 72 LEU n 1 73 GLN n 1 74 SER n 1 75 TYR n 1 76 SER n 1 77 TYR n 1 78 GLY n 1 79 ALA n 1 80 LEU n 1 81 MET n 1 82 ASP n 1 83 ILE n 1 84 ASN n 1 85 GLU n 1 86 PRO n 1 87 ARG n 1 88 PHE n 1 89 PRO n 1 90 PHE n 1 91 HIS n 1 92 ALA n 1 93 ALA n 1 94 GLU n 1 95 CYS n 1 96 HIS n 1 97 LEU n 1 98 GLN n 1 99 LEU n 1 100 GLY n 1 101 ASP n 1 102 LEU n 1 103 ASP n 1 104 GLY n 1 105 ALA n 1 106 GLU n 1 107 SER n 1 108 GLY n 1 109 PHE n 1 110 TYR n 1 111 SER n 1 112 ALA n 1 113 ARG n 1 114 ALA n 1 115 LEU n 1 116 ALA n 1 117 ALA n 1 118 ALA n 1 119 GLN n 1 120 PRO n 1 121 ALA n 1 122 HIS n 1 123 GLU n 1 124 ALA n 1 125 LEU n 1 126 ALA n 1 127 ALA n 1 128 ARG n 1 129 ALA n 1 130 GLY n 1 131 ALA n 1 132 MET n 1 133 LEU n 1 134 GLU n 1 135 ALA n 1 136 VAL n 1 137 THR n 1 138 ALA n 1 139 ARG n 1 140 LYS n 1 141 ASP n 1 142 ARG n 2 1 ASP n 2 2 ARG n 2 3 VAL n 2 4 GLU n 2 5 LEU n 2 6 ASN n 2 7 ALA n 2 8 PRO n 2 9 ARG n 2 10 GLN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain CHA _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'PSEUDOMONAS AERUGINOSA' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 287 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'PET DUET 1' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'PSEUDOMONAS AERUGINOSA' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 287 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP Q9I325_PSEAE 1 ? ? Q9I325 ? 2 UNP O50280_PSEAE 2 ? ? O50280 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2XCB A 3 ? 142 ? Q9I325 21 ? 160 ? 21 160 2 1 2XCB B 3 ? 142 ? Q9I325 21 ? 160 ? 21 160 3 2 2XCB C 1 ? 10 ? O50280 47 ? 56 ? 47 56 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2XCB GLY A 1 ? UNP Q9I325 ? ? 'expression tag' 19 1 1 2XCB SER A 2 ? UNP Q9I325 ? ? 'expression tag' 20 2 2 2XCB GLY B 1 ? UNP Q9I325 ? ? 'expression tag' 19 3 2 2XCB SER B 2 ? UNP Q9I325 ? ? 'expression tag' 20 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NO3 non-polymer . 'NITRATE ION' ? 'N O3 -1' 62.005 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2XCB _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.85 _exptl_crystal.density_percent_sol 44.5 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.1 M TRIS-HCL PH 8.0, 1.5 M LICL, 16% PEG6000' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2009-11-23 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.933 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-2' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-2 _diffrn_source.pdbx_wavelength 0.933 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2XCB _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.00 _reflns.d_resolution_high 1.85 _reflns.number_obs 26728 _reflns.number_all ? _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs 0.07 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 29.19 _reflns.B_iso_Wilson_estimate 35.706 _reflns.pdbx_redundancy 14 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.85 _reflns_shell.d_res_low 1.96 _reflns_shell.percent_possible_all 99.4 _reflns_shell.Rmerge_I_obs 0.70 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.70 _reflns_shell.pdbx_redundancy 14 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2XCB _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 25212 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 40.70 _refine.ls_d_res_high 1.85 _refine.ls_percent_reflns_obs 99.91 _refine.ls_R_factor_obs 0.23319 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.22991 _refine.ls_R_factor_R_free 0.26218 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.1 _refine.ls_number_reflns_R_free 2826 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.945 _refine.correlation_coeff_Fo_to_Fc_free 0.933 _refine.B_iso_mean 32.511 _refine.aniso_B[1][1] -0.33 _refine.aniso_B[2][2] 2.66 _refine.aniso_B[3][3] -2.33 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.167 _refine.pdbx_overall_ESU_R_Free 0.152 _refine.overall_SU_ML 0.132 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 4.574 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2097 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 95 _refine_hist.number_atoms_total 2196 _refine_hist.d_res_high 1.85 _refine_hist.d_res_low 40.70 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.021 0.021 ? 2259 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.731 1.953 ? 3079 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.995 5.000 ? 305 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 40.339 24.390 ? 123 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 17.109 15.000 ? 357 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 19.319 15.000 ? 15 'X-RAY DIFFRACTION' ? r_chiral_restr 0.116 0.200 ? 318 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.010 0.020 ? 1825 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.075 1.500 ? 1407 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.897 2.000 ? 2199 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 3.175 3.000 ? 852 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 4.826 4.500 ? 863 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso 1 A 962 0.63 5.00 'loose positional' 1 1 'X-RAY DIFFRACTION' ? ? ? 2 B 962 0.63 5.00 'loose positional' 1 2 'X-RAY DIFFRACTION' ? ? ? 1 A 962 6.59 10.00 'loose thermal' 1 3 'X-RAY DIFFRACTION' ? ? ? 2 B 962 6.59 10.00 'loose thermal' 1 4 'X-RAY DIFFRACTION' ? ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.850 _refine_ls_shell.d_res_low 1.898 _refine_ls_shell.number_reflns_R_work 1811 _refine_ls_shell.R_factor_R_work 0.355 _refine_ls_shell.percent_reflns_obs 99.90 _refine_ls_shell.R_factor_R_free 0.401 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 201 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _struct_ncs_dom.id _struct_ncs_dom.details _struct_ncs_dom.pdbx_ens_id 1 A 1 2 B 1 # loop_ _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.selection_details 1 A 27 A 157 1 6 ? ? ? ? ? ? ? ? 1 ? 2 B 27 B 157 1 6 ? ? ? ? ? ? ? ? 1 ? # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 2XCB _struct.title 'Crystal structure of PcrH in complex with the chaperone binding region of PopD' _struct.pdbx_descriptor 'REGULATORY PROTEIN PCRH, PEPD' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2XCB _struct_keywords.pdbx_keywords 'PROTEIN BINDING' _struct_keywords.text 'PROTEIN TRANSPORT, BACTERIAL TOXIN, TYPE III SECRETION, PROTEIN BINDING' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 14 ? ALA A 31 ? SER A 32 ALA A 49 1 ? 18 HELX_P HELX_P2 2 LYS A 33 ? ASP A 48 ? LYS A 51 ASP A 66 1 ? 16 HELX_P HELX_P3 3 ASP A 51 ? LEU A 65 ? ASP A 69 LEU A 83 1 ? 15 HELX_P HELX_P4 4 LEU A 67 ? ASP A 82 ? LEU A 85 ASP A 100 1 ? 16 HELX_P HELX_P5 5 PRO A 86 ? LEU A 99 ? PRO A 104 LEU A 117 1 ? 14 HELX_P HELX_P6 6 ASP A 101 ? ALA A 118 ? ASP A 119 ALA A 136 1 ? 18 HELX_P HELX_P7 7 GLN A 119 ? ALA A 121 ? GLN A 137 ALA A 139 5 ? 3 HELX_P HELX_P8 8 HIS A 122 ? ASP A 141 ? HIS A 140 ASP A 159 1 ? 20 HELX_P HELX_P9 9 SER B 14 ? ALA B 31 ? SER B 32 ALA B 49 1 ? 18 HELX_P HELX_P10 10 LYS B 33 ? ASP B 48 ? LYS B 51 ASP B 66 1 ? 16 HELX_P HELX_P11 11 ASP B 51 ? LEU B 65 ? ASP B 69 LEU B 83 1 ? 15 HELX_P HELX_P12 12 LEU B 67 ? ASP B 82 ? LEU B 85 ASP B 100 1 ? 16 HELX_P HELX_P13 13 PRO B 86 ? LEU B 99 ? PRO B 104 LEU B 117 1 ? 14 HELX_P HELX_P14 14 ASP B 101 ? ALA B 118 ? ASP B 119 ALA B 136 1 ? 18 HELX_P HELX_P15 15 GLN B 119 ? GLU B 123 ? GLN B 137 GLU B 141 5 ? 5 HELX_P HELX_P16 16 ALA B 124 ? ALA B 138 ? ALA B 142 ALA B 156 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 9 _struct_site.details 'BINDING SITE FOR RESIDUE NO3 B 1157' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 HIS A 49 ? HIS A 67 . ? 1_555 ? 2 AC1 9 TYR A 50 ? TYR A 68 . ? 1_555 ? 3 AC1 9 GLN B 42 ? GLN B 60 . ? 1_555 ? 4 AC1 9 CYS B 45 ? CYS B 63 . ? 1_555 ? 5 AC1 9 MET B 46 ? MET B 64 . ? 1_555 ? 6 AC1 9 PHE B 55 ? PHE B 73 . ? 1_555 ? 7 AC1 9 LEU B 58 ? LEU B 76 . ? 1_555 ? 8 AC1 9 HOH F . ? HOH B 2035 . ? 1_555 ? 9 AC1 9 HOH F . ? HOH B 2036 . ? 1_555 ? # _database_PDB_matrix.entry_id 2XCB _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2XCB _atom_sites.fract_transf_matrix[1][1] 0.022538 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010233 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013589 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 19 ? ? ? A . n A 1 2 SER 2 20 ? ? ? A . n A 1 3 ASP 3 21 ? ? ? A . n A 1 4 GLY 4 22 ? ? ? A . n A 1 5 GLY 5 23 ? ? ? A . n A 1 6 THR 6 24 ? ? ? A . n A 1 7 LEU 7 25 ? ? ? A . n A 1 8 ALA 8 26 ? ? ? A . n A 1 9 MET 9 27 27 MET MET A . n A 1 10 LEU 10 28 28 LEU LEU A . n A 1 11 ARG 11 29 29 ARG ARG A . n A 1 12 GLY 12 30 30 GLY GLY A . n A 1 13 LEU 13 31 31 LEU LEU A . n A 1 14 SER 14 32 32 SER SER A . n A 1 15 GLU 15 33 33 GLU GLU A . n A 1 16 ASP 16 34 34 ASP ASP A . n A 1 17 THR 17 35 35 THR THR A . n A 1 18 LEU 18 36 36 LEU LEU A . n A 1 19 GLU 19 37 37 GLU GLU A . n A 1 20 GLN 20 38 38 GLN GLN A . n A 1 21 LEU 21 39 39 LEU LEU A . n A 1 22 TYR 22 40 40 TYR TYR A . n A 1 23 ALA 23 41 41 ALA ALA A . n A 1 24 LEU 24 42 42 LEU LEU A . n A 1 25 GLY 25 43 43 GLY GLY A . n A 1 26 PHE 26 44 44 PHE PHE A . n A 1 27 ASN 27 45 45 ASN ASN A . n A 1 28 GLN 28 46 46 GLN GLN A . n A 1 29 TYR 29 47 47 TYR TYR A . n A 1 30 GLN 30 48 48 GLN GLN A . n A 1 31 ALA 31 49 49 ALA ALA A . n A 1 32 GLY 32 50 50 GLY GLY A . n A 1 33 LYS 33 51 51 LYS LYS A . n A 1 34 TRP 34 52 52 TRP TRP A . n A 1 35 ASP 35 53 53 ASP ASP A . n A 1 36 ASP 36 54 54 ASP ASP A . n A 1 37 ALA 37 55 55 ALA ALA A . n A 1 38 GLN 38 56 56 GLN GLN A . n A 1 39 LYS 39 57 57 LYS LYS A . n A 1 40 ILE 40 58 58 ILE ILE A . n A 1 41 PHE 41 59 59 PHE PHE A . n A 1 42 GLN 42 60 60 GLN GLN A . n A 1 43 ALA 43 61 61 ALA ALA A . n A 1 44 LEU 44 62 62 LEU LEU A . n A 1 45 CYS 45 63 63 CYS CYS A . n A 1 46 MET 46 64 64 MET MET A . n A 1 47 LEU 47 65 65 LEU LEU A . n A 1 48 ASP 48 66 66 ASP ASP A . n A 1 49 HIS 49 67 67 HIS HIS A . n A 1 50 TYR 50 68 68 TYR TYR A . n A 1 51 ASP 51 69 69 ASP ASP A . n A 1 52 ALA 52 70 70 ALA ALA A . n A 1 53 ARG 53 71 71 ARG ARG A . n A 1 54 TYR 54 72 72 TYR TYR A . n A 1 55 PHE 55 73 73 PHE PHE A . n A 1 56 LEU 56 74 74 LEU LEU A . n A 1 57 GLY 57 75 75 GLY GLY A . n A 1 58 LEU 58 76 76 LEU LEU A . n A 1 59 GLY 59 77 77 GLY GLY A . n A 1 60 ALA 60 78 78 ALA ALA A . n A 1 61 CYS 61 79 79 CYS CYS A . n A 1 62 ARG 62 80 80 ARG ARG A . n A 1 63 GLN 63 81 81 GLN GLN A . n A 1 64 SER 64 82 82 SER SER A . n A 1 65 LEU 65 83 83 LEU LEU A . n A 1 66 GLY 66 84 84 GLY GLY A . n A 1 67 LEU 67 85 85 LEU LEU A . n A 1 68 TYR 68 86 86 TYR TYR A . n A 1 69 GLU 69 87 87 GLU GLU A . n A 1 70 GLN 70 88 88 GLN GLN A . n A 1 71 ALA 71 89 89 ALA ALA A . n A 1 72 LEU 72 90 90 LEU LEU A . n A 1 73 GLN 73 91 91 GLN GLN A . n A 1 74 SER 74 92 92 SER SER A . n A 1 75 TYR 75 93 93 TYR TYR A . n A 1 76 SER 76 94 94 SER SER A . n A 1 77 TYR 77 95 95 TYR TYR A . n A 1 78 GLY 78 96 96 GLY GLY A . n A 1 79 ALA 79 97 97 ALA ALA A . n A 1 80 LEU 80 98 98 LEU LEU A . n A 1 81 MET 81 99 99 MET MET A . n A 1 82 ASP 82 100 100 ASP ASP A . n A 1 83 ILE 83 101 101 ILE ILE A . n A 1 84 ASN 84 102 102 ASN ASN A . n A 1 85 GLU 85 103 103 GLU GLU A . n A 1 86 PRO 86 104 104 PRO PRO A . n A 1 87 ARG 87 105 105 ARG ARG A . n A 1 88 PHE 88 106 106 PHE PHE A . n A 1 89 PRO 89 107 107 PRO PRO A . n A 1 90 PHE 90 108 108 PHE PHE A . n A 1 91 HIS 91 109 109 HIS HIS A . n A 1 92 ALA 92 110 110 ALA ALA A . n A 1 93 ALA 93 111 111 ALA ALA A . n A 1 94 GLU 94 112 112 GLU GLU A . n A 1 95 CYS 95 113 113 CYS CYS A . n A 1 96 HIS 96 114 114 HIS HIS A . n A 1 97 LEU 97 115 115 LEU LEU A . n A 1 98 GLN 98 116 116 GLN GLN A . n A 1 99 LEU 99 117 117 LEU LEU A . n A 1 100 GLY 100 118 118 GLY GLY A . n A 1 101 ASP 101 119 119 ASP ASP A . n A 1 102 LEU 102 120 120 LEU LEU A . n A 1 103 ASP 103 121 121 ASP ASP A . n A 1 104 GLY 104 122 122 GLY GLY A . n A 1 105 ALA 105 123 123 ALA ALA A . n A 1 106 GLU 106 124 124 GLU GLU A . n A 1 107 SER 107 125 125 SER SER A . n A 1 108 GLY 108 126 126 GLY GLY A . n A 1 109 PHE 109 127 127 PHE PHE A . n A 1 110 TYR 110 128 128 TYR TYR A . n A 1 111 SER 111 129 129 SER SER A . n A 1 112 ALA 112 130 130 ALA ALA A . n A 1 113 ARG 113 131 131 ARG ARG A . n A 1 114 ALA 114 132 132 ALA ALA A . n A 1 115 LEU 115 133 133 LEU LEU A . n A 1 116 ALA 116 134 134 ALA ALA A . n A 1 117 ALA 117 135 135 ALA ALA A . n A 1 118 ALA 118 136 136 ALA ALA A . n A 1 119 GLN 119 137 137 GLN GLN A . n A 1 120 PRO 120 138 138 PRO PRO A . n A 1 121 ALA 121 139 139 ALA ALA A . n A 1 122 HIS 122 140 140 HIS HIS A . n A 1 123 GLU 123 141 141 GLU GLU A . n A 1 124 ALA 124 142 142 ALA ALA A . n A 1 125 LEU 125 143 143 LEU LEU A . n A 1 126 ALA 126 144 144 ALA ALA A . n A 1 127 ALA 127 145 145 ALA ALA A . n A 1 128 ARG 128 146 146 ARG ARG A . n A 1 129 ALA 129 147 147 ALA ALA A . n A 1 130 GLY 130 148 148 GLY GLY A . n A 1 131 ALA 131 149 149 ALA ALA A . n A 1 132 MET 132 150 150 MET MET A . n A 1 133 LEU 133 151 151 LEU LEU A . n A 1 134 GLU 134 152 152 GLU GLU A . n A 1 135 ALA 135 153 153 ALA ALA A . n A 1 136 VAL 136 154 154 VAL VAL A . n A 1 137 THR 137 155 155 THR THR A . n A 1 138 ALA 138 156 156 ALA ALA A . n A 1 139 ARG 139 157 157 ARG ARG A . n A 1 140 LYS 140 158 158 LYS LYS A . n A 1 141 ASP 141 159 159 ASP ASP A . n A 1 142 ARG 142 160 ? ? ? A . n B 1 1 GLY 1 19 ? ? ? B . n B 1 2 SER 2 20 ? ? ? B . n B 1 3 ASP 3 21 ? ? ? B . n B 1 4 GLY 4 22 ? ? ? B . n B 1 5 GLY 5 23 ? ? ? B . n B 1 6 THR 6 24 ? ? ? B . n B 1 7 LEU 7 25 25 LEU LEU B . n B 1 8 ALA 8 26 26 ALA ALA B . n B 1 9 MET 9 27 27 MET MET B . n B 1 10 LEU 10 28 28 LEU LEU B . n B 1 11 ARG 11 29 29 ARG ARG B . n B 1 12 GLY 12 30 30 GLY GLY B . n B 1 13 LEU 13 31 31 LEU LEU B . n B 1 14 SER 14 32 32 SER SER B . n B 1 15 GLU 15 33 33 GLU GLU B . n B 1 16 ASP 16 34 34 ASP ASP B . n B 1 17 THR 17 35 35 THR THR B . n B 1 18 LEU 18 36 36 LEU LEU B . n B 1 19 GLU 19 37 37 GLU GLU B . n B 1 20 GLN 20 38 38 GLN GLN B . n B 1 21 LEU 21 39 39 LEU LEU B . n B 1 22 TYR 22 40 40 TYR TYR B . n B 1 23 ALA 23 41 41 ALA ALA B . n B 1 24 LEU 24 42 42 LEU LEU B . n B 1 25 GLY 25 43 43 GLY GLY B . n B 1 26 PHE 26 44 44 PHE PHE B . n B 1 27 ASN 27 45 45 ASN ASN B . n B 1 28 GLN 28 46 46 GLN GLN B . n B 1 29 TYR 29 47 47 TYR TYR B . n B 1 30 GLN 30 48 48 GLN GLN B . n B 1 31 ALA 31 49 49 ALA ALA B . n B 1 32 GLY 32 50 50 GLY GLY B . n B 1 33 LYS 33 51 51 LYS LYS B . n B 1 34 TRP 34 52 52 TRP TRP B . n B 1 35 ASP 35 53 53 ASP ASP B . n B 1 36 ASP 36 54 54 ASP ASP B . n B 1 37 ALA 37 55 55 ALA ALA B . n B 1 38 GLN 38 56 56 GLN GLN B . n B 1 39 LYS 39 57 57 LYS LYS B . n B 1 40 ILE 40 58 58 ILE ILE B . n B 1 41 PHE 41 59 59 PHE PHE B . n B 1 42 GLN 42 60 60 GLN GLN B . n B 1 43 ALA 43 61 61 ALA ALA B . n B 1 44 LEU 44 62 62 LEU LEU B . n B 1 45 CYS 45 63 63 CYS CYS B . n B 1 46 MET 46 64 64 MET MET B . n B 1 47 LEU 47 65 65 LEU LEU B . n B 1 48 ASP 48 66 66 ASP ASP B . n B 1 49 HIS 49 67 67 HIS HIS B . n B 1 50 TYR 50 68 68 TYR TYR B . n B 1 51 ASP 51 69 69 ASP ASP B . n B 1 52 ALA 52 70 70 ALA ALA B . n B 1 53 ARG 53 71 71 ARG ARG B . n B 1 54 TYR 54 72 72 TYR TYR B . n B 1 55 PHE 55 73 73 PHE PHE B . n B 1 56 LEU 56 74 74 LEU LEU B . n B 1 57 GLY 57 75 75 GLY GLY B . n B 1 58 LEU 58 76 76 LEU LEU B . n B 1 59 GLY 59 77 77 GLY GLY B . n B 1 60 ALA 60 78 78 ALA ALA B . n B 1 61 CYS 61 79 79 CYS CYS B . n B 1 62 ARG 62 80 80 ARG ARG B . n B 1 63 GLN 63 81 81 GLN GLN B . n B 1 64 SER 64 82 82 SER SER B . n B 1 65 LEU 65 83 83 LEU LEU B . n B 1 66 GLY 66 84 84 GLY GLY B . n B 1 67 LEU 67 85 85 LEU LEU B . n B 1 68 TYR 68 86 86 TYR TYR B . n B 1 69 GLU 69 87 87 GLU GLU B . n B 1 70 GLN 70 88 88 GLN GLN B . n B 1 71 ALA 71 89 89 ALA ALA B . n B 1 72 LEU 72 90 90 LEU LEU B . n B 1 73 GLN 73 91 91 GLN GLN B . n B 1 74 SER 74 92 92 SER SER B . n B 1 75 TYR 75 93 93 TYR TYR B . n B 1 76 SER 76 94 94 SER SER B . n B 1 77 TYR 77 95 95 TYR TYR B . n B 1 78 GLY 78 96 96 GLY GLY B . n B 1 79 ALA 79 97 97 ALA ALA B . n B 1 80 LEU 80 98 98 LEU LEU B . n B 1 81 MET 81 99 99 MET MET B . n B 1 82 ASP 82 100 100 ASP ASP B . n B 1 83 ILE 83 101 101 ILE ILE B . n B 1 84 ASN 84 102 102 ASN ASN B . n B 1 85 GLU 85 103 103 GLU GLU B . n B 1 86 PRO 86 104 104 PRO PRO B . n B 1 87 ARG 87 105 105 ARG ARG B . n B 1 88 PHE 88 106 106 PHE PHE B . n B 1 89 PRO 89 107 107 PRO PRO B . n B 1 90 PHE 90 108 108 PHE PHE B . n B 1 91 HIS 91 109 109 HIS HIS B . n B 1 92 ALA 92 110 110 ALA ALA B . n B 1 93 ALA 93 111 111 ALA ALA B . n B 1 94 GLU 94 112 112 GLU GLU B . n B 1 95 CYS 95 113 113 CYS CYS B . n B 1 96 HIS 96 114 114 HIS HIS B . n B 1 97 LEU 97 115 115 LEU LEU B . n B 1 98 GLN 98 116 116 GLN GLN B . n B 1 99 LEU 99 117 117 LEU LEU B . n B 1 100 GLY 100 118 118 GLY GLY B . n B 1 101 ASP 101 119 119 ASP ASP B . n B 1 102 LEU 102 120 120 LEU LEU B . n B 1 103 ASP 103 121 121 ASP ASP B . n B 1 104 GLY 104 122 122 GLY GLY B . n B 1 105 ALA 105 123 123 ALA ALA B . n B 1 106 GLU 106 124 124 GLU GLU B . n B 1 107 SER 107 125 125 SER SER B . n B 1 108 GLY 108 126 126 GLY GLY B . n B 1 109 PHE 109 127 127 PHE PHE B . n B 1 110 TYR 110 128 128 TYR TYR B . n B 1 111 SER 111 129 129 SER SER B . n B 1 112 ALA 112 130 130 ALA ALA B . n B 1 113 ARG 113 131 131 ARG ARG B . n B 1 114 ALA 114 132 132 ALA ALA B . n B 1 115 LEU 115 133 133 LEU LEU B . n B 1 116 ALA 116 134 134 ALA ALA B . n B 1 117 ALA 117 135 135 ALA ALA B . n B 1 118 ALA 118 136 136 ALA ALA B . n B 1 119 GLN 119 137 137 GLN GLN B . n B 1 120 PRO 120 138 138 PRO PRO B . n B 1 121 ALA 121 139 139 ALA ALA B . n B 1 122 HIS 122 140 140 HIS HIS B . n B 1 123 GLU 123 141 141 GLU GLU B . n B 1 124 ALA 124 142 142 ALA ALA B . n B 1 125 LEU 125 143 143 LEU LEU B . n B 1 126 ALA 126 144 144 ALA ALA B . n B 1 127 ALA 127 145 145 ALA ALA B . n B 1 128 ARG 128 146 146 ARG ARG B . n B 1 129 ALA 129 147 147 ALA ALA B . n B 1 130 GLY 130 148 148 GLY GLY B . n B 1 131 ALA 131 149 149 ALA ALA B . n B 1 132 MET 132 150 150 MET MET B . n B 1 133 LEU 133 151 151 LEU LEU B . n B 1 134 GLU 134 152 152 GLU GLU B . n B 1 135 ALA 135 153 153 ALA ALA B . n B 1 136 VAL 136 154 154 VAL VAL B . n B 1 137 THR 137 155 155 THR THR B . n B 1 138 ALA 138 156 156 ALA ALA B . n B 1 139 ARG 139 157 ? ? ? B . n B 1 140 LYS 140 158 ? ? ? B . n B 1 141 ASP 141 159 ? ? ? B . n B 1 142 ARG 142 160 ? ? ? B . n C 2 1 ASP 1 47 ? ? ? C . n C 2 2 ARG 2 48 48 ARG ARG C . n C 2 3 VAL 3 49 49 VAL VAL C . n C 2 4 GLU 4 50 50 GLU GLU C . n C 2 5 LEU 5 51 51 LEU LEU C . n C 2 6 ASN 6 52 52 ASN ASN C . n C 2 7 ALA 7 53 53 ALA ALA C . n C 2 8 PRO 8 54 54 PRO PRO C . n C 2 9 ARG 9 55 55 ARG ARG C . n C 2 10 GLN 10 56 ? ? ? C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 NO3 1 1157 1157 NO3 NO3 B . E 4 HOH 1 2001 2001 HOH HOH A . E 4 HOH 2 2002 2002 HOH HOH A . E 4 HOH 3 2003 2003 HOH HOH A . E 4 HOH 4 2004 2004 HOH HOH A . E 4 HOH 5 2005 2005 HOH HOH A . E 4 HOH 6 2006 2006 HOH HOH A . E 4 HOH 7 2007 2007 HOH HOH A . E 4 HOH 8 2008 2008 HOH HOH A . E 4 HOH 9 2009 2009 HOH HOH A . E 4 HOH 10 2010 2010 HOH HOH A . E 4 HOH 11 2011 2011 HOH HOH A . E 4 HOH 12 2012 2012 HOH HOH A . E 4 HOH 13 2013 2013 HOH HOH A . E 4 HOH 14 2014 2014 HOH HOH A . E 4 HOH 15 2015 2015 HOH HOH A . E 4 HOH 16 2016 2016 HOH HOH A . E 4 HOH 17 2017 2017 HOH HOH A . E 4 HOH 18 2018 2018 HOH HOH A . E 4 HOH 19 2019 2019 HOH HOH A . E 4 HOH 20 2020 2020 HOH HOH A . E 4 HOH 21 2021 2021 HOH HOH A . E 4 HOH 22 2022 2022 HOH HOH A . E 4 HOH 23 2023 2023 HOH HOH A . E 4 HOH 24 2024 2024 HOH HOH A . E 4 HOH 25 2025 2025 HOH HOH A . E 4 HOH 26 2026 2026 HOH HOH A . E 4 HOH 27 2027 2027 HOH HOH A . E 4 HOH 28 2028 2028 HOH HOH A . E 4 HOH 29 2029 2029 HOH HOH A . E 4 HOH 30 2030 2030 HOH HOH A . E 4 HOH 31 2031 2031 HOH HOH A . E 4 HOH 32 2032 2032 HOH HOH A . E 4 HOH 33 2033 2033 HOH HOH A . E 4 HOH 34 2034 2034 HOH HOH A . E 4 HOH 35 2035 2035 HOH HOH A . E 4 HOH 36 2036 2036 HOH HOH A . E 4 HOH 37 2037 2037 HOH HOH A . E 4 HOH 38 2038 2038 HOH HOH A . E 4 HOH 39 2039 2039 HOH HOH A . E 4 HOH 40 2040 2040 HOH HOH A . E 4 HOH 41 2041 2041 HOH HOH A . E 4 HOH 42 2042 2042 HOH HOH A . E 4 HOH 43 2043 2043 HOH HOH A . E 4 HOH 44 2044 2044 HOH HOH A . E 4 HOH 45 2045 2045 HOH HOH A . E 4 HOH 46 2046 2046 HOH HOH A . E 4 HOH 47 2047 2047 HOH HOH A . E 4 HOH 48 2048 2048 HOH HOH A . E 4 HOH 49 2049 2049 HOH HOH A . E 4 HOH 50 2050 2050 HOH HOH A . E 4 HOH 51 2051 2051 HOH HOH A . E 4 HOH 52 2052 2052 HOH HOH A . E 4 HOH 53 2053 2053 HOH HOH A . F 4 HOH 1 2001 2001 HOH HOH B . F 4 HOH 2 2002 2002 HOH HOH B . F 4 HOH 3 2003 2003 HOH HOH B . F 4 HOH 4 2004 2004 HOH HOH B . F 4 HOH 5 2005 2005 HOH HOH B . F 4 HOH 6 2006 2006 HOH HOH B . F 4 HOH 7 2007 2007 HOH HOH B . F 4 HOH 8 2008 2008 HOH HOH B . F 4 HOH 9 2009 2009 HOH HOH B . F 4 HOH 10 2010 2010 HOH HOH B . F 4 HOH 11 2011 2011 HOH HOH B . F 4 HOH 12 2012 2012 HOH HOH B . F 4 HOH 13 2013 2013 HOH HOH B . F 4 HOH 14 2014 2014 HOH HOH B . F 4 HOH 15 2015 2015 HOH HOH B . F 4 HOH 16 2016 2016 HOH HOH B . F 4 HOH 17 2017 2017 HOH HOH B . F 4 HOH 18 2018 2018 HOH HOH B . F 4 HOH 19 2019 2019 HOH HOH B . F 4 HOH 20 2020 2020 HOH HOH B . F 4 HOH 21 2021 2021 HOH HOH B . F 4 HOH 22 2022 2022 HOH HOH B . F 4 HOH 23 2023 2023 HOH HOH B . F 4 HOH 24 2024 2024 HOH HOH B . F 4 HOH 25 2025 2025 HOH HOH B . F 4 HOH 26 2026 2026 HOH HOH B . F 4 HOH 27 2027 2027 HOH HOH B . F 4 HOH 28 2028 2028 HOH HOH B . F 4 HOH 29 2029 2029 HOH HOH B . F 4 HOH 30 2030 2030 HOH HOH B . F 4 HOH 31 2031 2031 HOH HOH B . F 4 HOH 32 2032 2032 HOH HOH B . F 4 HOH 33 2033 2033 HOH HOH B . F 4 HOH 34 2034 2034 HOH HOH B . F 4 HOH 35 2035 2035 HOH HOH B . F 4 HOH 36 2036 2036 HOH HOH B . G 4 HOH 1 2001 2001 HOH HOH C . G 4 HOH 2 2002 2002 HOH HOH C . G 4 HOH 3 2003 2003 HOH HOH C . G 4 HOH 4 2004 2004 HOH HOH C . G 4 HOH 5 2005 2005 HOH HOH C . G 4 HOH 6 2006 2006 HOH HOH C . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA trimeric 3 2 author_and_software_defined_assembly PISA trimeric 3 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 B,D,F 1 2 A,C,E,G 2 2 A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2780 ? 1 MORE -15.5 ? 1 'SSA (A^2)' 13630 ? 2 'ABSA (A^2)' 2710 ? 2 MORE -11.4 ? 2 'SSA (A^2)' 13700 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'crystal symmetry operation' 4_454 x-1/2,-y+1/2,-z-1 1.0000000000 0.0000000000 0.0000000000 -22.1850000000 0.0000000000 -1.0000000000 0.0000000000 48.8600000000 0.0000000000 0.0000000000 -1.0000000000 -73.5900000000 2 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-05-05 2 'Structure model' 1 1 2012-10-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Derived calculations' 2 2 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.5.0102 ? 1 XDS 'data reduction' . ? 2 XDS 'data scaling' . ? 3 PHASER phasing . ? 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 2028 ? ? O A HOH 2030 ? ? 1.94 2 1 OH B TYR 68 ? ? O B HOH 2015 ? ? 2.05 3 1 CE2 B TYR 68 ? ? O B HOH 2015 ? ? 2.11 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 CG _pdbx_validate_symm_contact.auth_asym_id_1 B _pdbx_validate_symm_contact.auth_comp_id_1 LYS _pdbx_validate_symm_contact.auth_seq_id_1 51 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 2001 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 4_554 _pdbx_validate_symm_contact.dist 2.10 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A ASP 54 ? ? CG A ASP 54 ? ? OD1 A ASP 54 ? ? 124.35 118.30 6.05 0.90 N 2 1 CB A ASP 119 ? ? CG A ASP 119 ? ? OD1 A ASP 119 ? ? 124.53 118.30 6.23 0.90 N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id PRO _pdbx_validate_torsion.auth_asym_id C _pdbx_validate_torsion.auth_seq_id 54 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -72.53 _pdbx_validate_torsion.psi -115.27 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A MET 27 ? CG ? A MET 9 CG 2 1 Y 1 A MET 27 ? SD ? A MET 9 SD 3 1 Y 1 A MET 27 ? CE ? A MET 9 CE 4 1 Y 1 B LEU 25 ? CG ? B LEU 7 CG 5 1 Y 1 B LEU 25 ? CD1 ? B LEU 7 CD1 6 1 Y 1 B LEU 25 ? CD2 ? B LEU 7 CD2 7 1 Y 1 B VAL 154 ? CG1 ? B VAL 136 CG1 8 1 Y 1 B VAL 154 ? CG2 ? B VAL 136 CG2 9 1 Y 1 C ARG 48 ? CG ? C ARG 2 CG 10 1 Y 1 C ARG 48 ? CD ? C ARG 2 CD 11 1 Y 1 C ARG 48 ? NE ? C ARG 2 NE 12 1 Y 1 C ARG 48 ? CZ ? C ARG 2 CZ 13 1 Y 1 C ARG 48 ? NH1 ? C ARG 2 NH1 14 1 Y 1 C ARG 48 ? NH2 ? C ARG 2 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 19 ? A GLY 1 2 1 Y 1 A SER 20 ? A SER 2 3 1 Y 1 A ASP 21 ? A ASP 3 4 1 Y 1 A GLY 22 ? A GLY 4 5 1 Y 1 A GLY 23 ? A GLY 5 6 1 Y 1 A THR 24 ? A THR 6 7 1 Y 1 A LEU 25 ? A LEU 7 8 1 Y 1 A ALA 26 ? A ALA 8 9 1 Y 1 A ARG 160 ? A ARG 142 10 1 Y 1 B GLY 19 ? B GLY 1 11 1 Y 1 B SER 20 ? B SER 2 12 1 Y 1 B ASP 21 ? B ASP 3 13 1 Y 1 B GLY 22 ? B GLY 4 14 1 Y 1 B GLY 23 ? B GLY 5 15 1 Y 1 B THR 24 ? B THR 6 16 1 Y 1 B ARG 157 ? B ARG 139 17 1 Y 1 B LYS 158 ? B LYS 140 18 1 Y 1 B ASP 159 ? B ASP 141 19 1 Y 1 B ARG 160 ? B ARG 142 20 1 Y 1 C ASP 47 ? C ASP 1 21 1 Y 1 C GLN 56 ? C GLN 10 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'NITRATE ION' NO3 4 water HOH #