HEADER DNA/TRANSFERASE 24-APR-10 2XCP TITLE TERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE, 7,8- TITLE 2 DIHYDRO-8-OXODEOXYGUANINE MODIFIED DNA AND DCTP - MAGNESIUM FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE IV; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: POL IV; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP *TP*DOC)-3'; COMPND 9 CHAIN: E, P; COMPND 10 ENGINEERED: YES; COMPND 11 OTHER_DETAILS: 13-MER PRIMER; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: 5'-D(*TP*CP*AP*CP*8OGP*GP*AP*AP*TP*CP*CP COMPND 14 *TP*TP*CP*CP*CP*CP*C)-3'; COMPND 15 CHAIN: F, T; COMPND 16 ENGINEERED: YES; COMPND 17 OTHER_DETAILS: 18-MER TEMPLATE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; SOURCE 3 ORGANISM_TAXID: 273057; SOURCE 4 STRAIN: P2; SOURCE 5 GENE: DPO4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B/DPO4-NHIS; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES KEYWDS DNA-TRANSFERASE COMPLEX, TRANSLESION DNA POLYMERASE, KEYWDS 2 NUCLEOTIDYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.IRIMIA,M.EGLI REVDAT 3 20-DEC-23 2XCP 1 REMARK LINK REVDAT 2 18-APR-12 2XCP 1 JRNL REMARK VERSN REVDAT 1 08-SEP-10 2XCP 0 JRNL AUTH A.IRIMIA,L.V.LOUKACHEVITCH,R.L.EOFF,F.P.GUENGERICH,M.EGLI JRNL TITL METAL ION DEPENDENCE OF THE ACTIVE SITE CONFORMATION OF THE JRNL TITL 2 TRANS-LESION DNA POLYMERASE DPO4 FROM SULFOLOBUS JRNL TITL 3 SOLFATARICUS JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 66 1013 2010 JRNL REFN ESSN 1744-3091 JRNL PMID 20823515 JRNL DOI 10.1107/S1744309110029374 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1081851.970 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 37629 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1874 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.76 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5393 REMARK 3 BIN R VALUE (WORKING SET) : 0.3360 REMARK 3 BIN FREE R VALUE : 0.3830 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 292 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.022 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5498 REMARK 3 NUCLEIC ACID ATOMS : 1223 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 305 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 47.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.25000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : -4.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 3.08000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.34 REMARK 3 ESD FROM SIGMAA (A) : 0.34 REMARK 3 LOW RESOLUTION CUTOFF (A) : 50.0 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.42 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.42 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.000 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.330 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.290 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.980 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.090 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.33 REMARK 3 BSOL : 57.57 REMARK 3 REMARK 3 NCS MODEL : NONE REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA1.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : DCTP.PARAM REMARK 3 PARAMETER FILE 5 : WATER.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA1.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : DCTP.TOP REMARK 3 TOPOLOGY FILE 5 : WATER.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2XCP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-APR-10. REMARK 100 THE DEPOSITION ID IS D_1290043671. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : ROSENBAUM-ROCK MONOCHROMATOR REMARK 200 HIGH -RESOLUTION DOUBLE- CRYSTAL REMARK 200 SI(220) SAGITTAL FOCUSING, REMARK 200 ROSENBAUM-ROCK VERTICAL FOCUSING REMARK 200 MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37629 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 49.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.49000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2C2E REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: RESERVOIR:12-20% POLYETHYLENE GLYCOL REMARK 280 3350, 0.2 M AMMONIUM ACETATE, 0.1 M MAGNESIUM ACETATE, AND 20 MM REMARK 280 TRIS (PH 7.5) DROP: 10MM TRIS-CL PH 7.5, 30 MM NACL, 0.5MM DCTP, REMARK 280 2.5MM MGCL2, 6-10% POLYETHYLENE GLYCOL 3350, 0.1M AMMONIUM REMARK 280 ACETATE, 0.05M MAGNESIUM ACETATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 50.21450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -57.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P, T REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 ALA A 343 REMARK 465 ILE A 344 REMARK 465 GLY A 345 REMARK 465 LEU A 346 REMARK 465 ASP A 347 REMARK 465 LYS A 348 REMARK 465 PHE A 349 REMARK 465 PHE A 350 REMARK 465 ASP A 351 REMARK 465 THR A 352 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 ALA B 343 REMARK 465 ILE B 344 REMARK 465 GLY B 345 REMARK 465 LEU B 346 REMARK 465 ASP B 347 REMARK 465 LYS B 348 REMARK 465 PHE B 349 REMARK 465 PHE B 350 REMARK 465 ASP B 351 REMARK 465 THR B 352 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 342 CA C O CB CG CD OE1 REMARK 470 GLU A 342 OE2 REMARK 470 GLU B 342 CA C O CB CG CD OE1 REMARK 470 GLU B 342 OE2 REMARK 470 DT E 12 C7 REMARK 470 DT F 1 O5' C5' C4' O4' C3' C2' C1' REMARK 470 DT F 1 N1 C2 O2 N3 C4 O4 C5 REMARK 470 DT F 1 C7 C6 REMARK 470 DT T 1 O5' C5' C4' O4' C3' C2' C1' REMARK 470 DT T 1 N1 C2 O2 N3 C4 O4 C5 REMARK 470 DT T 1 C7 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3A DCP B 5000 O HOH A 2130 2.16 REMARK 500 O1A DCP B 5000 O HOH A 2130 2.16 REMARK 500 O3A DCP A 5000 O HOH A 2120 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT F 1 O3' DC F 2 P -0.092 REMARK 500 DT T 1 O3' DC T 2 P -0.089 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 10 46.42 24.65 REMARK 500 ASN A 20 88.28 -153.07 REMARK 500 VAL A 55 90.72 -66.88 REMARK 500 LEU A 68 68.57 -116.86 REMARK 500 ARG A 77 73.91 -107.50 REMARK 500 SER A 145 -169.26 -165.17 REMARK 500 GLU A 177 -142.47 -83.34 REMARK 500 LEU A 178 115.05 50.42 REMARK 500 ARG A 256 17.40 -141.59 REMARK 500 ASP A 277 -125.02 60.68 REMARK 500 ASP A 292 40.30 -105.94 REMARK 500 LEU A 293 26.63 46.32 REMARK 500 TYR B 10 52.74 18.84 REMARK 500 PRO B 21 -9.57 -53.92 REMARK 500 ARG B 36 -76.59 -49.69 REMARK 500 LEU B 68 53.75 -150.15 REMARK 500 ASN B 70 46.49 -109.51 REMARK 500 SER B 145 -168.32 -172.16 REMARK 500 ASN B 161 66.00 29.44 REMARK 500 ARG B 173 -76.39 -75.43 REMARK 500 LEU B 174 -30.14 -37.00 REMARK 500 LEU B 178 -90.73 -49.25 REMARK 500 ASP B 179 -136.47 165.79 REMARK 500 ILE B 180 -40.33 -158.60 REMARK 500 ILE B 199 44.53 -68.01 REMARK 500 LYS B 201 127.32 55.30 REMARK 500 ASP B 204 10.68 -69.67 REMARK 500 ILE B 208 157.69 -47.04 REMARK 500 PHE B 210 32.82 -79.11 REMARK 500 TYR B 224 -76.73 -87.14 REMARK 500 ASN B 234 85.38 -160.78 REMARK 500 ARG B 240 120.75 76.75 REMARK 500 ARG B 256 16.30 -143.89 REMARK 500 ASP B 277 -138.79 58.05 REMARK 500 PRO B 303 20.51 -76.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DT E 12 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1000 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 7 OD1 REMARK 620 2 PHE A 8 O 70.8 REMARK 620 3 ASP A 105 OD2 96.4 110.2 REMARK 620 4 HOH A2120 O 57.3 127.4 84.8 REMARK 620 5 DCP A5000 O3A 112.2 156.3 93.0 57.1 REMARK 620 6 DCP A5000 O2B 145.3 101.6 117.5 115.6 61.9 REMARK 620 7 DCP A5000 O2G 74.9 71.7 170.2 86.6 86.2 70.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1004 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 7 OD2 REMARK 620 2 ASP A 105 OD1 101.7 REMARK 620 3 GLU A 106 OE1 84.8 82.8 REMARK 620 4 HOH A2120 O 75.0 103.6 159.6 REMARK 620 5 HOH A2121 O 88.4 162.2 83.6 93.1 REMARK 620 6 DCP A5000 O1A 142.6 107.8 120.8 76.2 69.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 294 OD1 REMARK 620 2 HOH A2100 O 65.2 REMARK 620 3 DG P 9 OP2 170.6 124.1 REMARK 620 4 HOH P2014 O 100.5 164.9 70.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1005 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2126 O REMARK 620 2 HOH A2130 O 96.3 REMARK 620 3 ASP B 7 OD1 81.8 91.9 REMARK 620 4 ASP B 105 OD1 148.4 68.8 124.7 REMARK 620 5 GLU B 106 OE1 100.4 157.4 105.5 89.2 REMARK 620 6 DCP B5000 O1A 54.8 52.3 112.3 95.9 129.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2130 O REMARK 620 2 ASP B 7 OD2 79.6 REMARK 620 3 PHE B 8 O 147.0 83.7 REMARK 620 4 ASP B 105 OD2 60.4 90.8 91.9 REMARK 620 5 DCP B5000 O2B 116.4 160.3 87.1 107.0 REMARK 620 6 DCP B5000 O1G 98.3 79.2 106.2 158.0 86.7 REMARK 620 7 DCP B5000 O3A 58.8 127.3 148.1 94.7 61.1 76.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1003 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 294 OD2 REMARK 620 2 HOH B2085 O 88.0 REMARK 620 3 DG E 9 OP2 154.9 92.9 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DCP A 5000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DCP B 5000 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1S0M RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A BENZO[A]PYRENE DIOL EPOXIDE ADDUCTIN A REMARK 900 TERNARY COMPLEX WITH A DNA POLYMERASE REMARK 900 RELATED ID: 2ASL RELATED DB: PDB REMARK 900 OXOG-MODIFIED POSTINSERTION BINARY COMPLEX REMARK 900 RELATED ID: 2JEG RELATED DB: PDB REMARK 900 THE MOLECULAR BASIS OF SELECTIVITY OF NUCLEOSIDE TRIPHOSPHATE REMARK 900 INCORPORATION OPPOSITE O6-BENZYLGUANINE BY SULFOLOBUS SOLFATARICUS REMARK 900 DNA POLYMERASE IV: STEADY-STATE AND PRE- STEADY-STATE KINETICS AND REMARK 900 X-RAY CRYSTALLOGRAPHY OF CORRECT AND INCORRECT PAIRING REMARK 900 RELATED ID: 1RYS RELATED DB: PDB REMARK 900 REPLICATION OF A CIS-SYN THYMINE DIMER AT ATOMIC RESOLUTION REMARK 900 RELATED ID: 2V4S RELATED DB: PDB REMARK 900 Y-FAMILY DNA POLYMERASE DPO4 BYPASSING N2- NAPHTHYL-GUANINE ADDUCT REMARK 900 IN SYN ORIENTATION REMARK 900 RELATED ID: 2J6T RELATED DB: PDB REMARK 900 TERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE, O6- REMARK 900 METHYLGUANINE MODIFIED DNA, AND DATP. REMARK 900 RELATED ID: 2W9B RELATED DB: PDB REMARK 900 BINARY COMPLEX OF DPO4 BOUND TO N2,N2- DIMETHYL-DEOXYGUANOSINE REMARK 900 MODIFIED DNA REMARK 900 RELATED ID: 1N56 RELATED DB: PDB REMARK 900 Y-FAMILY DNA POLYMERASE DPO4 IN COMPLEX WITH DNA CONTAININGABASIC REMARK 900 LESION REMARK 900 RELATED ID: 2ATL RELATED DB: PDB REMARK 900 UNMODIFIED INSERTION TERNARY COMPLEX REMARK 900 RELATED ID: 1JX4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A Y-FAMILY DNA POLYMERASE IN A TERNARYCOMPLEX REMARK 900 WITH DNA SUBSTRATES AND AN INCOMING NUCLEOTIDE REMARK 900 RELATED ID: 2C22 RELATED DB: PDB REMARK 900 EFFICIENT AND HIGH FIDELITY INCORPORATION OF DCTP OPPOSITE 7,8- REMARK 900 DIHYDRO-8- OXODEOXYGUANOSINE BY SULFOLOBUS SOLFATARICUS DNA REMARK 900 POLYMERASE DPO4 REMARK 900 RELATED ID: 2VA2 RELATED DB: PDB REMARK 900 COMPLEX STRUCTURE OF SULFOLOBUS SOLFATARICUS DPO4 AND DNA DUPLEX REMARK 900 CONTAINING A HYDROPHOBIC THYMINE ISOSTERE 2,4-DIFLUOROTOLUENE REMARK 900 NUCLEOTIDE IN THE TEMPLATE STRAND REMARK 900 RELATED ID: 1S97 RELATED DB: PDB REMARK 900 DPO4 WITH GT MISMATCH REMARK 900 RELATED ID: 2AGQ RELATED DB: PDB REMARK 900 FIDELITY OF DPO4: EFFECT OF METAL IONS, NUCLEOTIDESELECTION AND REMARK 900 PYROPHOSPHOROLYSIS REMARK 900 RELATED ID: 2JEJ RELATED DB: PDB REMARK 900 THE MOLECULAR BASIS OF SELECTIVITY OF NUCLEOSIDE TRIPHOSPHATE REMARK 900 INCORPORATION OPPOSITE O6-BENZYLGUANINE BY SULFOLOBUS SOLFATARICUS REMARK 900 DNA POLYMERASE IV: STEADY-STATE AND PRE- STEADY-STATE KINETICS AND REMARK 900 X-RAY CRYSTALLOGRAPHY OF CORRECT AND INCORRECT PAIRING REMARK 900 RELATED ID: 2W9C RELATED DB: PDB REMARK 900 TERNARY COMPLEX OF DPO4 BOUND TO N2,N2- DIMETHYL-DEOXYGUANOSINE REMARK 900 MODIFIED DNA WITH INCOMING DTTP REMARK 900 RELATED ID: 2AGO RELATED DB: PDB REMARK 900 FIDELITY OF DPO4: EFFECT OF METAL IONS, NUCLEOTIDESELECTION AND REMARK 900 PYROPHOSPHOROLYSIS REMARK 900 RELATED ID: 2ASJ RELATED DB: PDB REMARK 900 OXOG-MODIFIED PREINSERTION BINARY COMPLEX REMARK 900 RELATED ID: 2ASD RELATED DB: PDB REMARK 900 OXOG-MODIFIED INSERTION TERNARY COMPLEX REMARK 900 RELATED ID: 2W9A RELATED DB: PDB REMARK 900 TERNARY COMPLEX OF DPO4 BOUND TO N2,N2- DIMETHYL-DEOXYGUANOSINE REMARK 900 MODIFIED DNA WITH INCOMING DGTP REMARK 900 RELATED ID: 1JXL RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A Y-FAMILY DNA POLYMERASE IN A TERNARYCOMPLEX REMARK 900 WITH DNA SUBSTRATES AND AN INCOMING NUCLEOTIDE REMARK 900 RELATED ID: 1N48 RELATED DB: PDB REMARK 900 Y-FAMILY DNA POLYMERASE DPO4 IN COMPLEX WITH DNA CONTAININGABASIC REMARK 900 LESION REMARK 900 RELATED ID: 2BQ3 RELATED DB: PDB REMARK 900 DNA ADDUCT BYPASS POLYMERIZATION BY SULFOLOBUS SOLFATARICUS DPO4. REMARK 900 ANALYSIS AND CRYSTAL STRUCTURES OF MULTIPLE BASE-PAIR SUBSTITUTION REMARK 900 AND FRAMESHIFT PRODUCTS WITH THE ADDUCT 1 ,N2-ETHENOGUANINE REMARK 900 RELATED ID: 2J6U RELATED DB: PDB REMARK 900 TERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE, O6- REMARK 900 METHYLGUANINE MODIFIED DNA, AND DGTP. REMARK 900 RELATED ID: 2UVU RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURES OF MUTANT DPO4 DNA POLYMERASES WITH 8-OXOG REMARK 900 CONTAINING DNA TEMPLATE-PRIMER CONSTRUCTS REMARK 900 RELATED ID: 2AGP RELATED DB: PDB REMARK 900 FIDELITY OF DPO4: EFFECT OF METAL IONS, NUCLEOTIDESELECTION AND REMARK 900 PYROPHOSPHOROLYSIS REMARK 900 RELATED ID: 2C2R RELATED DB: PDB REMARK 900 EFFICIENT AND HIGH FIDELITY INCORPORATION OF DCTP OPPOSITE 7,8- REMARK 900 DIHYDRO-8- OXODEOXYGUANOSINE BY SULFOLOBUS SOLFATARICUS DNA REMARK 900 POLYMERASE DPO4 REMARK 900 RELATED ID: 1S0N RELATED DB: PDB REMARK 900 SNAPSHOTS OF REPLICATION THROUGH AN ABASIC LESION:STRUCTURAL BASIS REMARK 900 FOR BASE SUBSTITUTION AND FRAMESHIFT REMARK 900 RELATED ID: 2XC9 RELATED DB: PDB REMARK 900 BINARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE AND 1, REMARK 900 N2-ETHENOGUANINE MODIFIED DNA, MAGNESIUM FORM REMARK 900 RELATED ID: 2JEF RELATED DB: PDB REMARK 900 THE MOLECULAR BASIS OF SELECTIVITY OF NUCLEOTIDE TRIPHOSPHATE REMARK 900 INCORPORATION OPPOSITE O6-BENZYLGUANINE BY SULFOLOBUS SOLFATARICUS REMARK 900 DNA POLYMERASE IV: STEADY-STATE AND PRE- STEADY-STATE AND X-RAY REMARK 900 CRYSTALLOGRAPHY OF CORRECT AND INCORRECT PAIRING REMARK 900 RELATED ID: 1S0O RELATED DB: PDB REMARK 900 SNAPSHOTS OF REPLICATION THROUGH AN ABASIC LESION:STRUCTURAL BASIS REMARK 900 FOR BASE SUBSTITUTION AND FRAMESHIFT REMARK 900 RELATED ID: 2W8L RELATED DB: PDB REMARK 900 Y-FAMILY DNA POLYMERASE DPO4 BYPASSING N2- NAPHTHYL-GUANINE ADDUCT REMARK 900 IN ANTI ORIENTATION REMARK 900 RELATED ID: 2UVW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURES OF MUTANT DPO4 DNA POLYMERASES WITH 8-OXOG REMARK 900 CONTAINING DNA TEMPLATE-PRIMER CONSTRUCTS REMARK 900 RELATED ID: 2BQR RELATED DB: PDB REMARK 900 DNA ADDUCT BYPASS POLYMERIZATION BY SULFOLOBUS SOLFATARICUS DPO4. REMARK 900 ANALYSIS AND CRYSTAL STRUCTURES OF MULTIPLE BASE-PAIR SUBSTITUTION REMARK 900 AND FRAMESHIFT PRODUCTS WITH THE ADDUCT 1 ,N2-ETHENOGUANINE REMARK 900 RELATED ID: 2JEI RELATED DB: PDB REMARK 900 THE MOLECULAR BASIS OF SELECTIVITY OF NUCLEOSIDE TRIPHOSPHATE REMARK 900 INCORPORATION OPPOSITE O6-BENZYLGUANINE BY SULFOLOBUS SOLFATARICUS REMARK 900 DNA POLYMERASE IV: STEADY-STATE AND PRE- STEADY-STATE KINETICS AND REMARK 900 X-RAY CRYSTALLOGRAPHY OF CORRECT AND INCORRECT PAIRING REMARK 900 RELATED ID: 2AU0 RELATED DB: PDB REMARK 900 UNMODIFIED PREINSERTION BINARY COMPLEX REMARK 900 RELATED ID: 1S9F RELATED DB: PDB REMARK 900 DPO WITH AT MATCHED REMARK 900 RELATED ID: 2BQU RELATED DB: PDB REMARK 900 DNA ADDUCT BYPASS POLYMERIZATION BY SULFOLOBUS SOLFATARICUS DPO4. REMARK 900 ANALYSIS AND CRYSTAL STRUCTURES OF MULTIPLE BASE-PAIR SUBSTITUTION REMARK 900 AND FRAMESHIFT PRODUCTS WITH THE ADDUCT 1 ,N2-ETHENOGUANINE REMARK 900 RELATED ID: 2XCA RELATED DB: PDB REMARK 900 TERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE, 7,8- REMARK 900 DIHYDRO-8- OXODEOXYGUANINE MODIFIED DNA AND DGTP - MAGNESIUM FORM REMARK 900 RELATED ID: 2C28 RELATED DB: PDB REMARK 900 EFFICIENT AND HIGH FIDELITY INCORPORATION OF DCTP OPPOSITE 7,8- REMARK 900 DIHYDRO-8- OXODEOXYGUANOSINE BY SULFOLOBUS SOLFATARICUS DNA REMARK 900 POLYMERASE DPO4 REMARK 900 RELATED ID: 2V9W RELATED DB: PDB REMARK 900 COMPLEX STRUCTURE OF SULFOLOBUS SOLFATARICUS DPO4 AND DNA DUPLEX REMARK 900 CONTAINING A HYDROPHOBIC THYMINE ISOSTERE 2,4-DIFLUOROTOLUENE REMARK 900 NUCLEOTIDE IN THE TEMPLATE STRAND REMARK 900 RELATED ID: 2V4R RELATED DB: PDB REMARK 900 NON-PRODUCTIVE COMPLEX OF THE Y-FAMILY DNA POLYMERASE DPO4 WITH REMARK 900 DGTP SKIPPING THE M1DG ADDUCT TO PAIR WITH THE NEXT TEMPLATE REMARK 900 CYTOSINE REMARK 900 RELATED ID: 2C2E RELATED DB: PDB REMARK 900 EFFICIENT AND HIGH FIDELITY INCORPORATION OF DCTP OPPOSITE 7,8- REMARK 900 DIHYDRO-8- OXODEOXYGUANOSINE BY SULFOLOBUS SOLFATARICUS DNA REMARK 900 POLYMERASE DPO4 REMARK 900 RELATED ID: 1RYR RELATED DB: PDB REMARK 900 REPLICATION OF A CIS-SYN THYMINE DIMER AT ATOMIC RESOLUTION REMARK 900 RELATED ID: 2UVV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURES OF MUTANT DPO4 DNA POLYMERASES WITH 8-OXOG REMARK 900 CONTAINING DNA TEMPLATE-PRIMER CONSTRUCTS REMARK 900 RELATED ID: 2C2D RELATED DB: PDB REMARK 900 EFFICIENT AND HIGH FIDELITY INCORPORATION OF DCTP OPPOSITE 7,8- REMARK 900 DIHYDRO-8- OXODEOXYGUANOSINE BY SULFOLOBUS SOLFATARICUS DNA REMARK 900 POLYMERASE DPO4 REMARK 900 RELATED ID: 2V4Q RELATED DB: PDB REMARK 900 POST-INSERTION COMPLEX OF THE Y-FAMILY DNA POLYMERASE DPO4 WITH REMARK 900 M1DG CONTAINING TEMPLATE DNA REMARK 900 RELATED ID: 1S10 RELATED DB: PDB REMARK 900 SNAPSHOTS OF REPLICATION THROUGH AN ABASIC LESION:STRUCTURAL BASIS REMARK 900 FOR BASE SUBSTITUTION AND FRAMESHIFT REMARK 900 RELATED ID: 2BR0 RELATED DB: PDB REMARK 900 DNA ADDUCT BYPASS POLYMERIZATION BY SULFOLOBUS SOLFATARICUS DPO4. REMARK 900 ANALYSIS AND CRYSTAL STRUCTURES OF MULTIPLE BASE-PAIR SUBSTITUTION REMARK 900 AND FRAMESHIFT PRODUCTS WITH THE ADDUCT 1 ,N2-ETHENOGUANINE REMARK 900 RELATED ID: 2J6S RELATED DB: PDB REMARK 900 TERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE, O6- REMARK 900 METHYLGUANINE MODIFIED DNA, AND DATP. REMARK 900 RELATED ID: 2UVR RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURES OF MUTANT DPO4 DNA POLYMERASES WITH 8-OXOG REMARK 900 CONTAINING DNA TEMPLATE-PRIMER CONSTRUCTS REMARK 900 RELATED ID: 2VA3 RELATED DB: PDB REMARK 900 COMPLEX STRUCTURE OF SULFOLOBUS SOLFATARICUS DPO4 AND DNA DUPLEX REMARK 900 CONTAINING A HYDROPHOBIC THYMINE ISOSTERE 2,4-DIFLUOROTOLUENE REMARK 900 NUCLEOTIDE IN THE TEMPLATE STRAND REMARK 900 RELATED ID: 2W8K RELATED DB: PDB REMARK 900 Y-FAMILY DNA POLYMERASE DPO4 BYPASSING N2- NAPHTHYL-GUANINE ADDUCT REMARK 900 IN SYN ORIENTATION REMARK 900 RELATED ID: 2V4T RELATED DB: PDB REMARK 900 Y-FAMILY DNA POLYMERASE DPO4 BYPASSING N2- NAPHTHYL-GUANINE ADDUCT REMARK 900 IN ANTI ORIENTATION REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE N-TERMINAL 6 RESIDUES HIS TAG ARE DISORDERED AND REMARK 999 MISSING FROM THE STRUCTURE. THE C-TERMINAL 11 RESIDUES ARE REMARK 999 DISORDERED AND ABSENT FROM THE STRUCTURE. REMARK 999 THE N-TERMINAL 5 RESIDUES OF THE HIS TAG ARE DISORDERED REMARK 999 AND MISSING FROM THE STRUCTURE. THE C-TERMINAL 11 RESIDUES REMARK 999 ARE DISORDERED AND ABSENT FROM THE STRUCTURE. DBREF 2XCP A 1 352 UNP Q97W02 DPO42_SULSO 1 352 DBREF 2XCP B 1 352 UNP Q97W02 DPO42_SULSO 1 352 DBREF 2XCP E 1 13 PDB 2XCP 2XCP 1 13 DBREF 2XCP F 1 18 PDB 2XCP 2XCP 1 18 DBREF 2XCP P 1 13 PDB 2XCP 2XCP 1 13 DBREF 2XCP T 1 18 PDB 2XCP 2XCP 1 18 SEQADV 2XCP HIS A -5 UNP Q97W02 EXPRESSION TAG SEQADV 2XCP HIS A -4 UNP Q97W02 EXPRESSION TAG SEQADV 2XCP HIS A -3 UNP Q97W02 EXPRESSION TAG SEQADV 2XCP HIS A -2 UNP Q97W02 EXPRESSION TAG SEQADV 2XCP HIS A -1 UNP Q97W02 EXPRESSION TAG SEQADV 2XCP HIS A 0 UNP Q97W02 EXPRESSION TAG SEQADV 2XCP HIS B -5 UNP Q97W02 EXPRESSION TAG SEQADV 2XCP HIS B -4 UNP Q97W02 EXPRESSION TAG SEQADV 2XCP HIS B -3 UNP Q97W02 EXPRESSION TAG SEQADV 2XCP HIS B -2 UNP Q97W02 EXPRESSION TAG SEQADV 2XCP HIS B -1 UNP Q97W02 EXPRESSION TAG SEQADV 2XCP HIS B 0 UNP Q97W02 EXPRESSION TAG SEQRES 1 A 358 HIS HIS HIS HIS HIS HIS MET ILE VAL LEU PHE VAL ASP SEQRES 2 A 358 PHE ASP TYR PHE TYR ALA GLN VAL GLU GLU VAL LEU ASN SEQRES 3 A 358 PRO SER LEU LYS GLY LYS PRO VAL VAL VAL CYS VAL PHE SEQRES 4 A 358 SER GLY ARG PHE GLU ASP SER GLY ALA VAL ALA THR ALA SEQRES 5 A 358 ASN TYR GLU ALA ARG LYS PHE GLY VAL LYS ALA GLY ILE SEQRES 6 A 358 PRO ILE VAL GLU ALA LYS LYS ILE LEU PRO ASN ALA VAL SEQRES 7 A 358 TYR LEU PRO MET ARG LYS GLU VAL TYR GLN GLN VAL SER SEQRES 8 A 358 SER ARG ILE MET ASN LEU LEU ARG GLU TYR SER GLU LYS SEQRES 9 A 358 ILE GLU ILE ALA SER ILE ASP GLU ALA TYR LEU ASP ILE SEQRES 10 A 358 SER ASP LYS VAL ARG ASP TYR ARG GLU ALA TYR ASN LEU SEQRES 11 A 358 GLY LEU GLU ILE LYS ASN LYS ILE LEU GLU LYS GLU LYS SEQRES 12 A 358 ILE THR VAL THR VAL GLY ILE SER LYS ASN LYS VAL PHE SEQRES 13 A 358 ALA LYS ILE ALA ALA ASP MET ALA LYS PRO ASN GLY ILE SEQRES 14 A 358 LYS VAL ILE ASP ASP GLU GLU VAL LYS ARG LEU ILE ARG SEQRES 15 A 358 GLU LEU ASP ILE ALA ASP VAL PRO GLY ILE GLY ASN ILE SEQRES 16 A 358 THR ALA GLU LYS LEU LYS LYS LEU GLY ILE ASN LYS LEU SEQRES 17 A 358 VAL ASP THR LEU SER ILE GLU PHE ASP LYS LEU LYS GLY SEQRES 18 A 358 MET ILE GLY GLU ALA LYS ALA LYS TYR LEU ILE SER LEU SEQRES 19 A 358 ALA ARG ASP GLU TYR ASN GLU PRO ILE ARG THR ARG VAL SEQRES 20 A 358 ARG LYS SER ILE GLY ARG ILE VAL THR MET LYS ARG ASN SEQRES 21 A 358 SER ARG ASN LEU GLU GLU ILE LYS PRO TYR LEU PHE ARG SEQRES 22 A 358 ALA ILE GLU GLU SER TYR TYR LYS LEU ASP LYS ARG ILE SEQRES 23 A 358 PRO LYS ALA ILE HIS VAL VAL ALA VAL THR GLU ASP LEU SEQRES 24 A 358 ASP ILE VAL SER ARG GLY ARG THR PHE PRO HIS GLY ILE SEQRES 25 A 358 SER LYS GLU THR ALA TYR SER GLU SER VAL LYS LEU LEU SEQRES 26 A 358 GLN LYS ILE LEU GLU GLU ASP GLU ARG LYS ILE ARG ARG SEQRES 27 A 358 ILE GLY VAL ARG PHE SER LYS PHE ILE GLU ALA ILE GLY SEQRES 28 A 358 LEU ASP LYS PHE PHE ASP THR SEQRES 1 B 358 HIS HIS HIS HIS HIS HIS MET ILE VAL LEU PHE VAL ASP SEQRES 2 B 358 PHE ASP TYR PHE TYR ALA GLN VAL GLU GLU VAL LEU ASN SEQRES 3 B 358 PRO SER LEU LYS GLY LYS PRO VAL VAL VAL CYS VAL PHE SEQRES 4 B 358 SER GLY ARG PHE GLU ASP SER GLY ALA VAL ALA THR ALA SEQRES 5 B 358 ASN TYR GLU ALA ARG LYS PHE GLY VAL LYS ALA GLY ILE SEQRES 6 B 358 PRO ILE VAL GLU ALA LYS LYS ILE LEU PRO ASN ALA VAL SEQRES 7 B 358 TYR LEU PRO MET ARG LYS GLU VAL TYR GLN GLN VAL SER SEQRES 8 B 358 SER ARG ILE MET ASN LEU LEU ARG GLU TYR SER GLU LYS SEQRES 9 B 358 ILE GLU ILE ALA SER ILE ASP GLU ALA TYR LEU ASP ILE SEQRES 10 B 358 SER ASP LYS VAL ARG ASP TYR ARG GLU ALA TYR ASN LEU SEQRES 11 B 358 GLY LEU GLU ILE LYS ASN LYS ILE LEU GLU LYS GLU LYS SEQRES 12 B 358 ILE THR VAL THR VAL GLY ILE SER LYS ASN LYS VAL PHE SEQRES 13 B 358 ALA LYS ILE ALA ALA ASP MET ALA LYS PRO ASN GLY ILE SEQRES 14 B 358 LYS VAL ILE ASP ASP GLU GLU VAL LYS ARG LEU ILE ARG SEQRES 15 B 358 GLU LEU ASP ILE ALA ASP VAL PRO GLY ILE GLY ASN ILE SEQRES 16 B 358 THR ALA GLU LYS LEU LYS LYS LEU GLY ILE ASN LYS LEU SEQRES 17 B 358 VAL ASP THR LEU SER ILE GLU PHE ASP LYS LEU LYS GLY SEQRES 18 B 358 MET ILE GLY GLU ALA LYS ALA LYS TYR LEU ILE SER LEU SEQRES 19 B 358 ALA ARG ASP GLU TYR ASN GLU PRO ILE ARG THR ARG VAL SEQRES 20 B 358 ARG LYS SER ILE GLY ARG ILE VAL THR MET LYS ARG ASN SEQRES 21 B 358 SER ARG ASN LEU GLU GLU ILE LYS PRO TYR LEU PHE ARG SEQRES 22 B 358 ALA ILE GLU GLU SER TYR TYR LYS LEU ASP LYS ARG ILE SEQRES 23 B 358 PRO LYS ALA ILE HIS VAL VAL ALA VAL THR GLU ASP LEU SEQRES 24 B 358 ASP ILE VAL SER ARG GLY ARG THR PHE PRO HIS GLY ILE SEQRES 25 B 358 SER LYS GLU THR ALA TYR SER GLU SER VAL LYS LEU LEU SEQRES 26 B 358 GLN LYS ILE LEU GLU GLU ASP GLU ARG LYS ILE ARG ARG SEQRES 27 B 358 ILE GLY VAL ARG PHE SER LYS PHE ILE GLU ALA ILE GLY SEQRES 28 B 358 LEU ASP LYS PHE PHE ASP THR SEQRES 1 E 13 DG DG DG DG DG DA DA DG DG DA DT DT DOC SEQRES 1 F 18 DT DC DA DC 8OG DG DA DA DT DC DC DT DT SEQRES 2 F 18 DC DC DC DC DC SEQRES 1 P 13 DG DG DG DG DG DA DA DG DG DA DT DT DOC SEQRES 1 T 18 DT DC DA DC 8OG DG DA DA DT DC DC DT DT SEQRES 2 T 18 DC DC DC DC DC MODRES 2XCP DOC E 13 DC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE MODRES 2XCP 8OG F 5 DG MODRES 2XCP DOC P 13 DC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE MODRES 2XCP 8OG T 5 DG HET DOC E 13 18 HET 8OG F 5 23 HET DOC P 13 18 HET 8OG T 5 23 HET MG A1000 1 HET MG A1002 1 HET MG A1004 1 HET DCP A5000 28 HET MG B1001 1 HET MG B1003 1 HET MG B1005 1 HET DCP B5000 28 HETNAM DOC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE HETNAM 8OG 8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM DCP 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE HETSYN 8OG 8-OXO-7,8-DIHYDRO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE FORMUL 3 DOC 2(C9 H14 N3 O6 P) FORMUL 4 8OG 2(C10 H14 N5 O8 P) FORMUL 7 MG 6(MG 2+) FORMUL 10 DCP 2(C9 H16 N3 O13 P3) FORMUL 15 HOH *305(H2 O) HELIX 1 1 TYR A 10 ASN A 20 1 11 HELIX 2 2 PRO A 21 LYS A 24 5 4 HELIX 3 3 ASN A 47 PHE A 53 1 7 HELIX 4 4 PRO A 60 LEU A 68 1 9 HELIX 5 5 ARG A 77 GLU A 94 1 18 HELIX 6 6 ASP A 117 GLU A 136 1 20 HELIX 7 7 ASN A 147 LYS A 159 1 13 HELIX 8 8 ASP A 167 GLU A 177 1 11 HELIX 9 9 ASP A 179 VAL A 183 5 5 HELIX 10 10 GLY A 187 LYS A 196 1 10 HELIX 11 11 VAL A 203 ILE A 208 1 6 HELIX 12 12 GLU A 209 ARG A 230 1 22 HELIX 13 13 ASN A 257 ASP A 277 1 21 HELIX 14 14 SER A 307 ASP A 326 1 20 HELIX 15 15 TYR B 10 ASN B 20 1 11 HELIX 16 16 PRO B 21 LYS B 24 5 4 HELIX 17 17 ASN B 47 LYS B 52 1 6 HELIX 18 18 PRO B 60 LYS B 66 1 7 HELIX 19 19 ARG B 77 GLU B 94 1 18 HELIX 20 20 ASP B 117 LYS B 137 1 21 HELIX 21 21 ASN B 147 LYS B 159 1 13 HELIX 22 22 ASP B 167 LEU B 178 1 12 HELIX 23 23 GLY B 187 LYS B 195 1 9 HELIX 24 24 GLY B 218 ARG B 230 1 13 HELIX 25 25 ASN B 257 LEU B 276 1 20 HELIX 26 26 SER B 307 ASP B 326 1 20 SHEET 1 AA 5 ILE A 99 SER A 103 0 SHEET 2 AA 5 GLU A 106 ASP A 110 -1 O GLU A 106 N SER A 103 SHEET 3 AA 5 VAL A 3 PHE A 8 -1 O LEU A 4 N LEU A 109 SHEET 4 AA 5 VAL A 140 SER A 145 -1 O THR A 141 N ASP A 7 SHEET 5 AA 5 ILE A 163 VAL A 165 1 O LYS A 164 N ILE A 144 SHEET 1 AB 3 GLY A 41 ALA A 46 0 SHEET 2 AB 3 VAL A 28 PHE A 33 -1 O VAL A 30 N ALA A 44 SHEET 3 AB 3 VAL A 72 PRO A 75 1 O VAL A 72 N VAL A 29 SHEET 1 AC 4 SER A 244 SER A 255 0 SHEET 2 AC 4 ILE A 330 PHE A 340 -1 O ILE A 330 N SER A 255 SHEET 3 AC 4 PRO A 281 THR A 290 -1 N LYS A 282 O LYS A 339 SHEET 4 AC 4 ILE A 295 THR A 301 -1 O VAL A 296 N ALA A 288 SHEET 1 BA 5 ILE B 99 SER B 103 0 SHEET 2 BA 5 GLU B 106 ASP B 110 -1 O GLU B 106 N SER B 103 SHEET 3 BA 5 VAL B 3 PHE B 8 -1 O LEU B 4 N LEU B 109 SHEET 4 BA 5 VAL B 140 SER B 145 -1 O THR B 141 N ASP B 7 SHEET 5 BA 5 ILE B 163 VAL B 165 1 O LYS B 164 N ILE B 144 SHEET 1 BB 3 GLY B 41 ALA B 46 0 SHEET 2 BB 3 VAL B 28 PHE B 33 -1 O VAL B 30 N ALA B 44 SHEET 3 BB 3 VAL B 72 PRO B 75 1 O VAL B 72 N VAL B 29 SHEET 1 BC 4 SER B 244 SER B 255 0 SHEET 2 BC 4 ILE B 330 PHE B 340 -1 O ILE B 330 N SER B 255 SHEET 3 BC 4 PRO B 281 THR B 290 -1 N LYS B 282 O SER B 338 SHEET 4 BC 4 ILE B 295 THR B 301 -1 O VAL B 296 N ALA B 288 LINK O3' DT E 12 P DOC E 13 1555 1555 1.60 LINK O3' DC F 4 P 8OG F 5 1555 1555 1.58 LINK O3' 8OG F 5 P DG F 6 1555 1555 1.59 LINK O3' DT P 12 P DOC P 13 1555 1555 1.59 LINK O3' DC T 4 P 8OG T 5 1555 1555 1.58 LINK O3' 8OG T 5 P DG T 6 1555 1555 1.60 LINK OD1 ASP A 7 MG MG A1000 1555 1555 2.51 LINK OD2 ASP A 7 MG MG A1004 1555 1555 2.30 LINK O PHE A 8 MG MG A1000 1555 1555 2.14 LINK OD2 ASP A 105 MG MG A1000 1555 1555 2.11 LINK OD1 ASP A 105 MG MG A1004 1555 1555 2.77 LINK OE1 GLU A 106 MG MG A1004 1555 1555 2.34 LINK OD1 ASP A 294 MG MG A1002 1555 1555 2.63 LINK MG MG A1000 O HOH A2120 1555 1555 2.13 LINK MG MG A1000 O3A DCP A5000 1555 1555 2.41 LINK MG MG A1000 O2B DCP A5000 1555 1555 2.54 LINK MG MG A1000 O2G DCP A5000 1555 1555 2.15 LINK MG MG A1002 O HOH A2100 1555 1555 2.49 LINK MG MG A1002 OP2 DG P 9 1555 1555 2.36 LINK MG MG A1002 O HOH P2014 1555 1555 2.46 LINK MG MG A1004 O HOH A2120 1555 1555 2.01 LINK MG MG A1004 O HOH A2121 1555 1555 2.05 LINK MG MG A1004 O1A DCP A5000 1555 1555 2.11 LINK O HOH A2126 MG MG B1005 1555 1555 2.00 LINK O HOH A2130 MG MG B1001 1555 1555 2.15 LINK O HOH A2130 MG MG B1005 1555 1555 2.03 LINK OD2 ASP B 7 MG MG B1001 1555 1555 2.37 LINK OD1 ASP B 7 MG MG B1005 1555 1555 2.05 LINK O PHE B 8 MG MG B1001 1555 1555 1.90 LINK OD2 ASP B 105 MG MG B1001 1555 1555 2.38 LINK OD1 ASP B 105 MG MG B1005 1555 1555 2.73 LINK OE1 GLU B 106 MG MG B1005 1555 1555 1.67 LINK OD2 ASP B 294 MG MG B1003 1555 1555 2.46 LINK MG MG B1001 O2B DCP B5000 1555 1555 2.64 LINK MG MG B1001 O1G DCP B5000 1555 1555 2.13 LINK MG MG B1001 O3A DCP B5000 1555 1555 2.25 LINK MG MG B1003 O HOH B2085 1555 1555 2.70 LINK MG MG B1003 OP2 DG E 9 1555 1555 2.36 LINK MG MG B1005 O1A DCP B5000 1555 1555 2.70 CISPEP 1 LYS A 159 PRO A 160 0 0.06 CISPEP 2 LYS B 159 PRO B 160 0 -0.13 SITE 1 AC1 5 ASP A 7 PHE A 8 ASP A 105 HOH A2120 SITE 2 AC1 5 DCP A5000 SITE 1 AC2 5 HOH A2130 ASP B 7 PHE B 8 ASP B 105 SITE 2 AC2 5 DCP B5000 SITE 1 AC3 4 ASP A 294 HOH A2100 DG P 9 HOH P2014 SITE 1 AC4 4 ASP B 294 HOH B2085 DG E 8 DG E 9 SITE 1 AC5 6 ASP A 7 ASP A 105 GLU A 106 HOH A2120 SITE 2 AC5 6 HOH A2121 DCP A5000 SITE 1 AC6 6 HOH A2126 HOH A2130 ASP B 7 ASP B 105 SITE 2 AC6 6 GLU B 106 DCP B5000 SITE 1 AC7 23 ASP A 7 PHE A 8 ASP A 9 TYR A 10 SITE 2 AC7 23 PHE A 11 TYR A 12 THR A 45 TYR A 48 SITE 3 AC7 23 ARG A 51 ILE A 104 ASP A 105 LYS A 159 SITE 4 AC7 23 MG A1000 MG A1004 HOH A2117 HOH A2118 SITE 5 AC7 23 HOH A2119 HOH A2120 HOH A2121 HOH A2122 SITE 6 AC7 23 HOH A2123 DOC P 13 8OG T 5 SITE 1 AC8 24 HOH A2124 HOH A2126 HOH A2128 HOH A2129 SITE 2 AC8 24 HOH A2130 HOH A2131 HOH A2132 HOH A2133 SITE 3 AC8 24 ASP B 7 PHE B 8 ASP B 9 TYR B 10 SITE 4 AC8 24 PHE B 11 TYR B 12 ALA B 44 THR B 45 SITE 5 AC8 24 TYR B 48 ARG B 51 ASP B 105 LYS B 159 SITE 6 AC8 24 MG B1001 MG B1005 DOC E 13 8OG F 5 CRYST1 59.757 100.429 105.873 90.00 96.08 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016734 0.000000 0.001782 0.00000 SCALE2 0.000000 0.009957 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009499 0.00000