HEADER SUGAR BINDING PROTEIN 28-APR-10 2XD2 TITLE THE CRYSTAL STRUCTURE OF MALX FROM STREPTOCOCCUS PNEUMONIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MALTOSE/MALTODEXTRIN-BINDING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 31-423; COMPND 5 SYNONYM: MALX; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 170187; SOURCE 4 STRAIN: TIGR4; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET 28; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMALX KEYWDS SOLUTE-BINDING PROTEIN, SUGAR BINDING PROTEIN, VIRULENCE, ALPHA- KEYWDS 2 GLUCAN, SUGAR TRANSPORT, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.W.ABBOTT,M.A.HIGGINS,S.HYRNUIK,B.PLUVINAGE,A.LAMMERTS VAN BUEREN, AUTHOR 2 A.B.BORASTON REVDAT 3 08-MAY-24 2XD2 1 REMARK REVDAT 2 28-JUL-10 2XD2 1 JRNL REVDAT 1 09-JUN-10 2XD2 0 JRNL AUTH D.W.ABBOTT,M.A.HIGGINS,S.HYRNUIK,B.PLUVINAGE, JRNL AUTH 2 A.LAMMERTS VAN BUEREN,A.B.BORASTON JRNL TITL THE MOLECULAR BASIS OF GLYCOGEN BREAKDOWN AND TRANSPORT IN JRNL TITL 2 STREPTOCOCCUS PNEUMONIAE. JRNL REF MOL.MICROBIOL. V. 77 183 2010 JRNL REFN ISSN 0950-382X JRNL PMID 20497336 JRNL DOI 10.1111/J.1365-2958.2010.07199.X REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 18625 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 998 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.97 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1351 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.36 REMARK 3 BIN R VALUE (WORKING SET) : 0.2920 REMARK 3 BIN FREE R VALUE SET COUNT : 86 REMARK 3 BIN FREE R VALUE : 0.3620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5740 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 58 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.58000 REMARK 3 B22 (A**2) : -0.98000 REMARK 3 B33 (A**2) : -2.54000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -3.26000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.456 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.346 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.947 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.915 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.868 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5850 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7930 ; 1.062 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 752 ; 5.158 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 254 ;41.282 ;26.772 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 988 ;19.040 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;31.749 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 876 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4428 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3726 ; 0.373 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5938 ; 0.697 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2124 ; 0.709 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1992 ; 1.260 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2XD2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-APR-10. REMARK 100 THE DEPOSITION ID IS D_1290043764. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 113 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 85794 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.42000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 90.65250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.47000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 90.65250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 28.47000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 7 REMARK 465 GLY A 8 REMARK 465 SER A 9 REMARK 465 SER A 10 REMARK 465 HIS A 11 REMARK 465 HIS A 12 REMARK 465 HIS A 13 REMARK 465 HIS A 14 REMARK 465 HIS A 15 REMARK 465 HIS A 16 REMARK 465 SER A 17 REMARK 465 SER A 18 REMARK 465 GLY A 19 REMARK 465 LEU A 20 REMARK 465 VAL A 21 REMARK 465 PRO A 22 REMARK 465 ARG A 23 REMARK 465 GLY A 24 REMARK 465 SER A 25 REMARK 465 HIS A 26 REMARK 465 MET A 27 REMARK 465 ALA A 28 REMARK 465 SER A 29 REMARK 465 ASP A 30 REMARK 465 LYS A 31 REMARK 465 PRO A 32 REMARK 465 ALA A 33 REMARK 465 ASP A 34 REMARK 465 SER A 35 REMARK 465 GLY A 36 REMARK 465 SER A 37 REMARK 465 SER A 38 REMARK 465 GLU A 39 REMARK 465 VAL A 40 REMARK 465 PHE A 420 REMARK 465 GLY A 421 REMARK 465 GLU A 422 REMARK 465 MET B 7 REMARK 465 GLY B 8 REMARK 465 SER B 9 REMARK 465 SER B 10 REMARK 465 HIS B 11 REMARK 465 HIS B 12 REMARK 465 HIS B 13 REMARK 465 HIS B 14 REMARK 465 HIS B 15 REMARK 465 HIS B 16 REMARK 465 SER B 17 REMARK 465 SER B 18 REMARK 465 GLY B 19 REMARK 465 LEU B 20 REMARK 465 VAL B 21 REMARK 465 PRO B 22 REMARK 465 ARG B 23 REMARK 465 GLY B 24 REMARK 465 SER B 25 REMARK 465 HIS B 26 REMARK 465 MET B 27 REMARK 465 ALA B 28 REMARK 465 SER B 29 REMARK 465 ASP B 30 REMARK 465 LYS B 31 REMARK 465 PRO B 32 REMARK 465 ALA B 33 REMARK 465 ASP B 34 REMARK 465 SER B 35 REMARK 465 GLY B 36 REMARK 465 SER B 37 REMARK 465 SER B 38 REMARK 465 GLU B 39 REMARK 465 VAL B 40 REMARK 465 LYS B 41 REMARK 465 LYS B 417 REMARK 465 GLN B 418 REMARK 465 LYS B 419 REMARK 465 PHE B 420 REMARK 465 GLY B 421 REMARK 465 GLU B 422 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 41 CG CD CE NZ REMARK 470 SER A 175 OG REMARK 470 SER B 175 OG REMARK 470 GLU B 250 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 416 CA - CB - CG ANGL. DEV. = 14.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 89 -6.01 -59.42 REMARK 500 ASN A 92 65.61 -67.14 REMARK 500 ASP A 110 34.74 -85.58 REMARK 500 LYS A 176 3.81 -65.44 REMARK 500 VAL A 210 -76.63 -66.86 REMARK 500 ASN A 214 58.75 39.97 REMARK 500 GLU A 250 -97.58 -131.52 REMARK 500 ALA A 313 30.30 -98.09 REMARK 500 THR A 340 -13.60 -140.61 REMARK 500 ASN A 341 -0.66 73.59 REMARK 500 LYS A 417 -42.09 71.99 REMARK 500 GLU B 65 -76.66 -61.48 REMARK 500 GLN B 89 39.49 -91.73 REMARK 500 ASN B 90 -42.02 -160.39 REMARK 500 ASN B 92 66.44 -104.57 REMARK 500 GLU B 182 99.42 -64.29 REMARK 500 ASP B 192 67.56 -67.71 REMARK 500 ASN B 225 171.02 -58.27 REMARK 500 ALA B 252 -87.64 114.62 REMARK 500 ASN B 284 66.10 -101.88 REMARK 500 ALA B 301 162.54 -47.64 REMARK 500 ASP B 338 -39.39 -39.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2XD3 RELATED DB: PDB REMARK 900 THE CRYSTAL STRUCTURE OF MALX FROM STREPTOCOCCUS PNEUMONIAE IN REMARK 900 COMPLEX WITH MALTOPENTAOSE. DBREF 2XD2 A 30 422 UNP P59213 MALX_STRPN 31 423 DBREF 2XD2 B 30 422 UNP P59213 MALX_STRPN 31 423 SEQADV 2XD2 MET A 7 UNP P59213 EXPRESSION TAG SEQADV 2XD2 GLY A 8 UNP P59213 EXPRESSION TAG SEQADV 2XD2 SER A 9 UNP P59213 EXPRESSION TAG SEQADV 2XD2 SER A 10 UNP P59213 EXPRESSION TAG SEQADV 2XD2 HIS A 11 UNP P59213 EXPRESSION TAG SEQADV 2XD2 HIS A 12 UNP P59213 EXPRESSION TAG SEQADV 2XD2 HIS A 13 UNP P59213 EXPRESSION TAG SEQADV 2XD2 HIS A 14 UNP P59213 EXPRESSION TAG SEQADV 2XD2 HIS A 15 UNP P59213 EXPRESSION TAG SEQADV 2XD2 HIS A 16 UNP P59213 EXPRESSION TAG SEQADV 2XD2 SER A 17 UNP P59213 EXPRESSION TAG SEQADV 2XD2 SER A 18 UNP P59213 EXPRESSION TAG SEQADV 2XD2 GLY A 19 UNP P59213 EXPRESSION TAG SEQADV 2XD2 LEU A 20 UNP P59213 EXPRESSION TAG SEQADV 2XD2 VAL A 21 UNP P59213 EXPRESSION TAG SEQADV 2XD2 PRO A 22 UNP P59213 EXPRESSION TAG SEQADV 2XD2 ARG A 23 UNP P59213 EXPRESSION TAG SEQADV 2XD2 GLY A 24 UNP P59213 EXPRESSION TAG SEQADV 2XD2 SER A 25 UNP P59213 EXPRESSION TAG SEQADV 2XD2 HIS A 26 UNP P59213 EXPRESSION TAG SEQADV 2XD2 MET A 27 UNP P59213 EXPRESSION TAG SEQADV 2XD2 ALA A 28 UNP P59213 EXPRESSION TAG SEQADV 2XD2 SER A 29 UNP P59213 EXPRESSION TAG SEQADV 2XD2 MET B 7 UNP P59213 EXPRESSION TAG SEQADV 2XD2 GLY B 8 UNP P59213 EXPRESSION TAG SEQADV 2XD2 SER B 9 UNP P59213 EXPRESSION TAG SEQADV 2XD2 SER B 10 UNP P59213 EXPRESSION TAG SEQADV 2XD2 HIS B 11 UNP P59213 EXPRESSION TAG SEQADV 2XD2 HIS B 12 UNP P59213 EXPRESSION TAG SEQADV 2XD2 HIS B 13 UNP P59213 EXPRESSION TAG SEQADV 2XD2 HIS B 14 UNP P59213 EXPRESSION TAG SEQADV 2XD2 HIS B 15 UNP P59213 EXPRESSION TAG SEQADV 2XD2 HIS B 16 UNP P59213 EXPRESSION TAG SEQADV 2XD2 SER B 17 UNP P59213 EXPRESSION TAG SEQADV 2XD2 SER B 18 UNP P59213 EXPRESSION TAG SEQADV 2XD2 GLY B 19 UNP P59213 EXPRESSION TAG SEQADV 2XD2 LEU B 20 UNP P59213 EXPRESSION TAG SEQADV 2XD2 VAL B 21 UNP P59213 EXPRESSION TAG SEQADV 2XD2 PRO B 22 UNP P59213 EXPRESSION TAG SEQADV 2XD2 ARG B 23 UNP P59213 EXPRESSION TAG SEQADV 2XD2 GLY B 24 UNP P59213 EXPRESSION TAG SEQADV 2XD2 SER B 25 UNP P59213 EXPRESSION TAG SEQADV 2XD2 HIS B 26 UNP P59213 EXPRESSION TAG SEQADV 2XD2 MET B 27 UNP P59213 EXPRESSION TAG SEQADV 2XD2 ALA B 28 UNP P59213 EXPRESSION TAG SEQADV 2XD2 SER B 29 UNP P59213 EXPRESSION TAG SEQADV 2XD2 ASN A 90 UNP P59213 SER 91 CONFLICT SEQADV 2XD2 ASN B 90 UNP P59213 SER 91 CONFLICT SEQADV 2XD2 LEU A 416 UNP P59213 ILE 417 CONFLICT SEQADV 2XD2 LEU B 416 UNP P59213 ILE 417 CONFLICT SEQRES 1 A 416 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 416 LEU VAL PRO ARG GLY SER HIS MET ALA SER ASP LYS PRO SEQRES 3 A 416 ALA ASP SER GLY SER SER GLU VAL LYS GLU LEU THR VAL SEQRES 4 A 416 TYR VAL ASP GLU GLY TYR LYS SER TYR ILE GLU GLU VAL SEQRES 5 A 416 ALA LYS ALA TYR GLU LYS GLU ALA GLY VAL LYS VAL THR SEQRES 6 A 416 LEU LYS THR GLY ASP ALA LEU GLY GLY LEU ASP LYS LEU SEQRES 7 A 416 SER LEU ASP ASN GLN ASN GLY ASN VAL PRO ASP VAL MET SEQRES 8 A 416 MET ALA PRO TYR ASP ARG VAL GLY SER LEU GLY SER ASP SEQRES 9 A 416 GLY GLN LEU SER GLU VAL LYS LEU SER ASP GLY ALA LYS SEQRES 10 A 416 THR ASP ASP THR THR LYS SER LEU VAL THR ALA ALA ASN SEQRES 11 A 416 GLY LYS VAL TYR GLY ALA PRO ALA VAL ILE GLU SER LEU SEQRES 12 A 416 VAL MET TYR TYR ASN LYS ASP LEU VAL LYS ASP ALA PRO SEQRES 13 A 416 LYS THR PHE ALA ASP LEU GLU ASN LEU ALA LYS ASP SER SEQRES 14 A 416 LYS TYR ALA PHE ALA GLY GLU ASP GLY LYS THR THR ALA SEQRES 15 A 416 PHE LEU ALA ASP TRP THR ASN PHE TYR TYR THR TYR GLY SEQRES 16 A 416 LEU LEU ALA GLY ASN GLY ALA TYR VAL PHE GLY GLN ASN SEQRES 17 A 416 GLY LYS ASP ALA LYS ASP ILE GLY LEU ALA ASN ASP GLY SEQRES 18 A 416 SER ILE VAL GLY ILE ASN TYR ALA LYS SER TRP TYR GLU SEQRES 19 A 416 LYS TRP PRO LYS GLY MET GLN ASP THR GLU GLY ALA GLY SEQRES 20 A 416 ASN LEU ILE GLN THR GLN PHE GLN GLU GLY LYS THR ALA SEQRES 21 A 416 ALA ILE ILE ASP GLY PRO TRP LYS ALA GLN ALA PHE LYS SEQRES 22 A 416 ASP ALA LYS VAL ASN TYR GLY VAL ALA THR ILE PRO THR SEQRES 23 A 416 LEU PRO ASN GLY LYS GLU TYR ALA ALA PHE GLY GLY GLY SEQRES 24 A 416 LYS ALA TRP VAL ILE PRO GLN ALA VAL LYS ASN LEU GLU SEQRES 25 A 416 ALA SER GLN LYS PHE VAL ASP PHE LEU VAL ALA THR GLU SEQRES 26 A 416 GLN GLN LYS VAL LEU TYR ASP LYS THR ASN GLU ILE PRO SEQRES 27 A 416 ALA ASN THR GLU ALA ARG SER TYR ALA GLU GLY LYS ASN SEQRES 28 A 416 ASP GLU LEU THR THR ALA VAL ILE LYS GLN PHE LYS ASN SEQRES 29 A 416 THR GLN PRO LEU PRO ASN ILE SER GLN MET SER ALA VAL SEQRES 30 A 416 TRP ASP PRO ALA LYS ASN MET LEU PHE ASP ALA VAL SER SEQRES 31 A 416 GLY GLN LYS ASP ALA LYS THR ALA ALA ASN ASP ALA VAL SEQRES 32 A 416 THR LEU ILE LYS GLU THR LEU LYS GLN LYS PHE GLY GLU SEQRES 1 B 416 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 416 LEU VAL PRO ARG GLY SER HIS MET ALA SER ASP LYS PRO SEQRES 3 B 416 ALA ASP SER GLY SER SER GLU VAL LYS GLU LEU THR VAL SEQRES 4 B 416 TYR VAL ASP GLU GLY TYR LYS SER TYR ILE GLU GLU VAL SEQRES 5 B 416 ALA LYS ALA TYR GLU LYS GLU ALA GLY VAL LYS VAL THR SEQRES 6 B 416 LEU LYS THR GLY ASP ALA LEU GLY GLY LEU ASP LYS LEU SEQRES 7 B 416 SER LEU ASP ASN GLN ASN GLY ASN VAL PRO ASP VAL MET SEQRES 8 B 416 MET ALA PRO TYR ASP ARG VAL GLY SER LEU GLY SER ASP SEQRES 9 B 416 GLY GLN LEU SER GLU VAL LYS LEU SER ASP GLY ALA LYS SEQRES 10 B 416 THR ASP ASP THR THR LYS SER LEU VAL THR ALA ALA ASN SEQRES 11 B 416 GLY LYS VAL TYR GLY ALA PRO ALA VAL ILE GLU SER LEU SEQRES 12 B 416 VAL MET TYR TYR ASN LYS ASP LEU VAL LYS ASP ALA PRO SEQRES 13 B 416 LYS THR PHE ALA ASP LEU GLU ASN LEU ALA LYS ASP SER SEQRES 14 B 416 LYS TYR ALA PHE ALA GLY GLU ASP GLY LYS THR THR ALA SEQRES 15 B 416 PHE LEU ALA ASP TRP THR ASN PHE TYR TYR THR TYR GLY SEQRES 16 B 416 LEU LEU ALA GLY ASN GLY ALA TYR VAL PHE GLY GLN ASN SEQRES 17 B 416 GLY LYS ASP ALA LYS ASP ILE GLY LEU ALA ASN ASP GLY SEQRES 18 B 416 SER ILE VAL GLY ILE ASN TYR ALA LYS SER TRP TYR GLU SEQRES 19 B 416 LYS TRP PRO LYS GLY MET GLN ASP THR GLU GLY ALA GLY SEQRES 20 B 416 ASN LEU ILE GLN THR GLN PHE GLN GLU GLY LYS THR ALA SEQRES 21 B 416 ALA ILE ILE ASP GLY PRO TRP LYS ALA GLN ALA PHE LYS SEQRES 22 B 416 ASP ALA LYS VAL ASN TYR GLY VAL ALA THR ILE PRO THR SEQRES 23 B 416 LEU PRO ASN GLY LYS GLU TYR ALA ALA PHE GLY GLY GLY SEQRES 24 B 416 LYS ALA TRP VAL ILE PRO GLN ALA VAL LYS ASN LEU GLU SEQRES 25 B 416 ALA SER GLN LYS PHE VAL ASP PHE LEU VAL ALA THR GLU SEQRES 26 B 416 GLN GLN LYS VAL LEU TYR ASP LYS THR ASN GLU ILE PRO SEQRES 27 B 416 ALA ASN THR GLU ALA ARG SER TYR ALA GLU GLY LYS ASN SEQRES 28 B 416 ASP GLU LEU THR THR ALA VAL ILE LYS GLN PHE LYS ASN SEQRES 29 B 416 THR GLN PRO LEU PRO ASN ILE SER GLN MET SER ALA VAL SEQRES 30 B 416 TRP ASP PRO ALA LYS ASN MET LEU PHE ASP ALA VAL SER SEQRES 31 B 416 GLY GLN LYS ASP ALA LYS THR ALA ALA ASN ASP ALA VAL SEQRES 32 B 416 THR LEU ILE LYS GLU THR LEU LYS GLN LYS PHE GLY GLU FORMUL 3 HOH *58(H2 O) HELIX 1 1 TYR A 51 LYS A 64 1 14 HELIX 2 2 ASP A 76 LYS A 83 1 8 HELIX 3 3 TYR A 101 ASP A 110 1 10 HELIX 4 4 SER A 119 LYS A 123 5 5 HELIX 5 5 ASP A 125 THR A 133 1 9 HELIX 6 6 THR A 164 ASP A 174 1 11 HELIX 7 7 SER A 175 TYR A 177 5 3 HELIX 8 8 ASN A 195 ASN A 206 1 12 HELIX 9 9 GLY A 212 LYS A 216 1 5 HELIX 10 10 ASN A 225 GLU A 240 1 16 HELIX 11 11 PRO A 243 ASP A 248 5 6 HELIX 12 12 GLY A 251 GLU A 262 1 12 HELIX 13 13 GLY A 271 TRP A 273 5 3 HELIX 14 14 LYS A 274 ALA A 281 1 8 HELIX 15 15 ASN A 316 ALA A 329 1 14 HELIX 16 16 ALA A 329 ASN A 341 1 13 HELIX 17 17 ASN A 346 LYS A 356 1 11 HELIX 18 18 ASP A 358 LYS A 369 1 12 HELIX 19 19 ILE A 377 ALA A 382 5 6 HELIX 20 20 VAL A 383 SER A 396 1 14 HELIX 21 21 ASP A 400 LEU A 416 1 17 HELIX 22 22 TYR B 51 ALA B 66 1 16 HELIX 23 23 ASP B 76 LYS B 83 1 8 HELIX 24 24 LYS B 83 GLN B 89 1 7 HELIX 25 25 TYR B 101 ASP B 110 1 10 HELIX 26 26 SER B 119 LYS B 123 5 5 HELIX 27 27 ASP B 125 VAL B 132 1 8 HELIX 28 28 PHE B 165 LYS B 173 1 9 HELIX 29 29 ASP B 174 TYR B 177 5 4 HELIX 30 30 ASN B 195 GLY B 205 1 11 HELIX 31 31 GLY B 212 LYS B 216 1 5 HELIX 32 32 ASN B 225 LYS B 241 1 17 HELIX 33 33 PRO B 243 ASP B 248 5 6 HELIX 34 34 ALA B 252 GLU B 262 1 11 HELIX 35 35 GLY B 271 TRP B 273 5 3 HELIX 36 36 LYS B 274 ALA B 281 1 8 HELIX 37 37 LEU B 317 ALA B 329 1 13 HELIX 38 38 ALA B 329 ASN B 341 1 13 HELIX 39 39 ASN B 346 LYS B 356 1 11 HELIX 40 40 ASP B 358 LYS B 369 1 12 HELIX 41 41 GLN B 379 GLY B 397 1 19 HELIX 42 42 ASP B 400 LEU B 416 1 17 SHEET 1 AA 5 LYS A 69 GLY A 75 0 SHEET 2 AA 5 GLU A 42 ASP A 48 1 O LEU A 43 N THR A 71 SHEET 3 AA 5 VAL A 96 PRO A 100 1 O VAL A 96 N TYR A 46 SHEET 4 AA 5 PHE A 302 VAL A 309 -1 O ALA A 307 N ALA A 99 SHEET 5 AA 5 GLN A 372 PRO A 373 1 O GLN A 372 N GLY A 303 SHEET 1 AB 5 LYS A 69 GLY A 75 0 SHEET 2 AB 5 GLU A 42 ASP A 48 1 O LEU A 43 N THR A 71 SHEET 3 AB 5 VAL A 96 PRO A 100 1 O VAL A 96 N TYR A 46 SHEET 4 AB 5 PHE A 302 VAL A 309 -1 O ALA A 307 N ALA A 99 SHEET 5 AB 5 ALA A 142 GLU A 147 -1 O ALA A 142 N TRP A 308 SHEET 1 AC 2 GLN A 372 PRO A 373 0 SHEET 2 AC 2 PHE A 302 VAL A 309 1 N GLY A 303 O GLN A 372 SHEET 1 AD 4 PHE A 189 LEU A 190 0 SHEET 2 AD 4 ALA A 267 ASP A 270 1 O ALA A 267 N LEU A 190 SHEET 3 AD 4 VAL A 150 ASN A 154 -1 O VAL A 150 N ASP A 270 SHEET 4 AD 4 TYR A 285 ALA A 288 -1 O GLY A 286 N TYR A 153 SHEET 1 AE 2 PHE A 211 PHE A 211 0 SHEET 2 AE 2 ASP A 217 ILE A 221 0 SHEET 1 BA 5 VAL B 70 GLY B 75 0 SHEET 2 BA 5 LEU B 43 ASP B 48 1 O LEU B 43 N THR B 71 SHEET 3 BA 5 VAL B 96 PRO B 100 1 O VAL B 96 N TYR B 46 SHEET 4 BA 5 PHE B 302 VAL B 309 -1 O ALA B 307 N ALA B 99 SHEET 5 BA 5 GLN B 372 PRO B 373 1 O GLN B 372 N GLY B 303 SHEET 1 BB 5 VAL B 70 GLY B 75 0 SHEET 2 BB 5 LEU B 43 ASP B 48 1 O LEU B 43 N THR B 71 SHEET 3 BB 5 VAL B 96 PRO B 100 1 O VAL B 96 N TYR B 46 SHEET 4 BB 5 PHE B 302 VAL B 309 -1 O ALA B 307 N ALA B 99 SHEET 5 BB 5 GLY B 141 GLU B 147 -1 O ALA B 142 N TRP B 308 SHEET 1 BC 2 GLN B 372 PRO B 373 0 SHEET 2 BC 2 PHE B 302 VAL B 309 1 N GLY B 303 O GLN B 372 SHEET 1 BD 4 PHE B 189 LEU B 190 0 SHEET 2 BD 4 ALA B 267 ASP B 270 1 O ALA B 267 N LEU B 190 SHEET 3 BD 4 VAL B 150 ASN B 154 -1 O VAL B 150 N ASP B 270 SHEET 4 BD 4 TYR B 285 ALA B 288 -1 O GLY B 286 N TYR B 153 SHEET 1 BE 2 PHE B 211 PHE B 211 0 SHEET 2 BE 2 ASP B 217 ILE B 221 0 CISPEP 1 ASN A 136 GLY A 137 0 -7.12 CISPEP 2 ASP A 183 GLY A 184 0 -8.35 CISPEP 3 ASN B 136 GLY B 137 0 -4.15 CISPEP 4 ASP B 183 GLY B 184 0 0.44 CISPEP 5 GLY B 251 ALA B 252 0 7.32 CRYST1 181.305 56.940 113.690 90.00 128.83 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005516 0.000000 0.004439 0.00000 SCALE2 0.000000 0.017562 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011291 0.00000