HEADER LIGASE 29-APR-10 2XD4 TITLE NUCLEOTIDE-BOUND STRUCTURES OF BACILLUS SUBTILIS GLYCINAMIDE TITLE 2 RIBONUCLEOTIDE SYNTHETASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHORIBOSYLAMINE--GLYCINE LIGASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GLYCINAMIDE RIBONUCLEOTIDE SYNTHETASE, COMPND 5 PHOSPHORIBOSYLGLYCINAMIDE SYNTHETASE, GARS; COMPND 6 EC: 6.3.4.13; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: B834(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET24A KEYWDS LIGASE, GAR-SYN, ATP-GRASP, METAL-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR J.A.BERTRAND,S.CHEN,H.ZALKIN,J.L.SMITH REVDAT 3 20-DEC-23 2XD4 1 REMARK LINK REVDAT 2 05-JUL-17 2XD4 1 REMARK REVDAT 1 23-MAR-11 2XD4 0 JRNL AUTH J.A.BERTRAND,S.CHEN,H.ZALKIN,J.L.SMITH JRNL TITL NUCLEOTIDE-BOUND STRUCTURES OF BACILLUS SUBTILIS GLYCINAMIDE JRNL TITL 2 RIBONUCLEOTIDE SYNTHETASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNX 2005 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN,ACCELRYS REMARK 3 : SOFTWARE INC.(BADGER,BERARD,KUMAR,SZALMA, REMARK 3 : YIP,DZAKULA) REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.22 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1336213.680 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.4 REMARK 3 NUMBER OF REFLECTIONS : 11710 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 562 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.011 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.2450 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.2430 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.287 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 562 REMARK 3 ESTIMATED ERROR OF FREE R VALUE (NO CUTOFF) : 0.0120 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 11710 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.82 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 70.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1388 REMARK 3 BIN R VALUE (WORKING SET) : 0.3040 REMARK 3 BIN FREE R VALUE : 0.4330 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.40 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 64 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.054 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3164 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 71 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 47.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -11.43000 REMARK 3 B22 (A**2) : 20.40000 REMARK 3 B33 (A**2) : -8.97000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM SIGMAA (A) : 0.36 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.46 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.59 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 0.900 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.650 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.300 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.230 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.930 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.880 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.37 REMARK 3 BSOL : 38.15 REMARK 3 REMARK 3 NCS MODEL : NONE REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PAR REMARK 3 PARAMETER FILE 2 : WATER_REP.PAR REMARK 3 PARAMETER FILE 3 : ADP.PAR REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ADP.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2XD4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-APR-10. REMARK 100 THE DEPOSITION ID IS D_1290043783. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-OCT-98 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS-IIC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11710 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 38.210 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.4 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 66.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.22000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2XCL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 4000, 0.1 M TRIS-HCL PH 8.5, REMARK 280 4.2 MM MGCL2, 1.8 MM ATP, PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.49500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.86000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.20500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.86000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.49500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.20500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 221 CG CD CE NZ REMARK 470 GLU A 352 CG CD OE1 OE2 REMARK 470 GLU A 366 CG CD OE1 OE2 REMARK 470 LYS A 403 CG CD CE NZ REMARK 470 LYS A 422 CA C O CB CG CD CE REMARK 470 LYS A 422 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 45 28.85 -73.53 REMARK 500 ALA A 97 -7.72 -59.98 REMARK 500 ALA A 149 6.20 90.41 REMARK 500 LYS A 151 31.89 -96.72 REMARK 500 ASP A 218 165.61 -49.94 REMARK 500 ILE A 249 -60.42 -123.79 REMARK 500 ASP A 314 61.53 -108.38 REMARK 500 GLU A 338 -168.59 -59.80 REMARK 500 GLN A 355 34.05 77.05 REMARK 500 GLU A 366 115.63 -165.19 REMARK 500 GLU A 369 -168.13 -127.10 REMARK 500 PHE A 387 -71.43 -46.50 REMARK 500 PHE A 407 -167.97 -126.33 REMARK 500 PHE A 408 178.65 174.81 REMARK 500 ALA A 419 -1.26 -55.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 452 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 167 NE2 REMARK 620 2 ASP A 172 OD2 76.3 REMARK 620 3 HOH A2038 O 58.7 64.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 451 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 283 OE1 REMARK 620 2 GLU A 283 OE2 52.2 REMARK 620 3 ASN A 285 OD1 88.2 86.1 REMARK 620 4 ADP A 461 O3B 85.6 79.1 164.8 REMARK 620 5 HOH A2070 O 123.1 160.1 113.7 81.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 453 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 283 OE2 REMARK 620 2 ADP A 461 O2A 64.1 REMARK 620 3 ADP A 461 O2B 82.4 68.4 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 461 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 451 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 452 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 453 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2XCL RELATED DB: PDB REMARK 900 NUCLEOTIDE-BOUND STRUCTURES OF BACILLUS SUBTILIS GLYCINAMIDE REMARK 900 RIBONUCLEOTIDE SYNTHETASE DBREF 2XD4 A 1 422 UNP P12039 PUR2_BACSU 1 422 SEQRES 1 A 422 MET ASN VAL LEU ILE ILE GLY LYS GLY GLY ARG GLU HIS SEQRES 2 A 422 THR LEU ALA TRP LYS ALA ALA GLN SER SER LEU VAL GLU SEQRES 3 A 422 ASN VAL PHE ALA ALA PRO GLY ASN ASP GLY MET ALA ALA SEQRES 4 A 422 SER ALA GLN LEU VAL ASN ILE GLU GLU SER ASP HIS ALA SEQRES 5 A 422 GLY LEU VAL SER PHE ALA LYS GLN ASN GLN VAL GLY LEU SEQRES 6 A 422 THR ILE VAL GLY PRO GLU VAL PRO LEU ILE GLU GLY LEU SEQRES 7 A 422 VAL ASP GLU PHE GLU LYS ALA GLY LEU HIS VAL PHE GLY SEQRES 8 A 422 PRO SER LYS ALA ALA ALA ILE ILE GLU GLY SER LYS GLN SEQRES 9 A 422 PHE ALA LYS ASP LEU MET LYS LYS TYR ASP ILE PRO THR SEQRES 10 A 422 ALA GLU TYR GLU THR PHE THR SER PHE ASP GLU ALA LYS SEQRES 11 A 422 ALA TYR VAL GLN GLU LYS GLY ALA PRO ILE VAL ILE LYS SEQRES 12 A 422 ALA ASP GLY LEU ALA ALA GLY LYS GLY VAL THR VAL ALA SEQRES 13 A 422 MET THR GLU GLU GLU ALA ILE ALA CYS LEU HIS ASP PHE SEQRES 14 A 422 LEU GLU ASP GLU LYS PHE GLY ASP ALA SER ALA SER VAL SEQRES 15 A 422 VAL ILE GLU GLU TYR LEU SER GLY GLU GLU PHE SER LEU SEQRES 16 A 422 MET ALA PHE VAL LYS GLY GLU LYS VAL TYR PRO MET VAL SEQRES 17 A 422 ILE ALA GLN ASP HIS LYS ARG ALA PHE ASP GLY ASP LYS SEQRES 18 A 422 GLY PRO ASN THR GLY GLY MET GLY ALA TYR SER PRO VAL SEQRES 19 A 422 PRO GLN ILE SER GLU GLU THR VAL ARG HIS ALA VAL GLU SEQRES 20 A 422 THR ILE VAL LYS PRO ALA ALA LYS ALA MET VAL GLN GLU SEQRES 21 A 422 GLY ARG SER PHE THR GLY VAL LEU TYR ALA GLY LEU MET SEQRES 22 A 422 LEU THR GLU ASN GLY SER LYS VAL ILE GLU PHE ASN ALA SEQRES 23 A 422 ARG PHE GLY ASP PRO GLU THR GLN VAL VAL LEU PRO ARG SEQRES 24 A 422 MET GLU SER ASP LEU VAL GLN VAL LEU LEU ASP LEU LEU SEQRES 25 A 422 ASP ASP LYS GLU VAL ASP LEU ARG TRP LYS ASP THR ALA SEQRES 26 A 422 ALA VAL SER VAL VAL LEU ALA SER GLU GLY TYR PRO GLU SEQRES 27 A 422 SER TYR ALA LYS GLY THR PRO ILE GLY SER LEU ALA ALA SEQRES 28 A 422 GLU THR GLU GLN VAL VAL VAL PHE HIS ALA GLY THR LYS SEQRES 29 A 422 ALA GLU GLY GLY GLU PHE VAL THR ASN GLY GLY ARG VAL SEQRES 30 A 422 ALA ASN VAL THR ALA PHE ASP GLU THR PHE GLU ALA ALA SEQRES 31 A 422 ARG ASP ARG VAL TYR LYS ALA VAL ASP GLU ILE PHE LYS SEQRES 32 A 422 PRO GLY LEU PHE PHE ARG LYS ASP ILE GLY ALA ARG ALA SEQRES 33 A 422 LEU LYS ALA ALA GLN LYS HET MG A 451 1 HET MG A 452 1 HET MG A 453 1 HET ADP A 461 27 HETNAM MG MAGNESIUM ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 2 MG 3(MG 2+) FORMUL 5 ADP C10 H15 N5 O10 P2 FORMUL 6 HOH *71(H2 O) HELIX 1 1 GLY A 9 GLN A 21 1 13 HELIX 2 2 ASN A 34 ALA A 38 5 5 HELIX 3 3 ASP A 50 ASN A 61 1 12 HELIX 4 4 PRO A 70 GLU A 76 1 7 HELIX 5 5 GLY A 77 ALA A 85 1 9 HELIX 6 6 ALA A 97 SER A 102 1 6 HELIX 7 7 SER A 102 TYR A 113 1 12 HELIX 8 8 SER A 125 GLY A 137 1 13 HELIX 9 9 LEU A 147 LYS A 151 5 5 HELIX 10 10 THR A 158 LEU A 170 1 13 HELIX 11 11 SER A 238 ILE A 249 1 12 HELIX 12 12 ILE A 249 GLN A 259 1 11 HELIX 13 13 PRO A 291 LEU A 297 1 7 HELIX 14 14 ASP A 303 ASP A 313 1 11 HELIX 15 15 THR A 386 PHE A 402 1 17 HELIX 16 16 GLY A 413 ALA A 419 1 7 SHEET 1 AA 5 GLN A 42 LEU A 43 0 SHEET 2 AA 5 ASN A 27 PRO A 32 1 O VAL A 28 N GLN A 42 SHEET 3 AA 5 ASN A 2 GLY A 7 1 O VAL A 3 N PHE A 29 SHEET 4 AA 5 VAL A 63 VAL A 68 1 N GLY A 64 O ASN A 2 SHEET 5 AA 5 VAL A 89 PHE A 90 1 O PHE A 90 N VAL A 68 SHEET 1 AB 4 TYR A 120 PHE A 123 0 SHEET 2 AB 4 VAL A 182 GLU A 186 -1 O VAL A 182 N PHE A 123 SHEET 3 AB 4 ILE A 140 ALA A 144 -1 O VAL A 141 N GLU A 185 SHEET 4 AB 4 VAL A 153 ALA A 156 -1 O THR A 154 N ILE A 142 SHEET 1 AC 4 LYS A 203 PRO A 206 0 SHEET 2 AC 4 GLU A 191 LYS A 200 -1 O PHE A 198 N TYR A 205 SHEET 3 AC 4 THR A 265 THR A 275 -1 O GLY A 266 N VAL A 199 SHEET 4 AC 4 GLY A 278 ASN A 285 -1 O GLY A 278 N THR A 275 SHEET 1 AD 4 GLN A 211 ASP A 212 0 SHEET 2 AD 4 GLY A 229 SER A 232 -1 O TYR A 231 N GLN A 211 SHEET 3 AD 4 ALA A 325 SER A 333 -1 O ALA A 326 N SER A 232 SHEET 4 AD 4 LEU A 406 PHE A 407 1 O PHE A 407 N ALA A 332 SHEET 1 AE 5 GLN A 211 ASP A 212 0 SHEET 2 AE 5 GLY A 229 SER A 232 -1 O TYR A 231 N GLN A 211 SHEET 3 AE 5 ALA A 325 SER A 333 -1 O ALA A 326 N SER A 232 SHEET 4 AE 5 ARG A 376 ASP A 384 -1 N VAL A 377 O LEU A 331 SHEET 5 AE 5 VAL A 356 HIS A 360 -1 O VAL A 357 N THR A 381 SHEET 1 AF 2 LEU A 406 PHE A 407 0 SHEET 2 AF 2 ALA A 325 SER A 333 1 O ALA A 332 N PHE A 407 SHEET 1 AG 2 ARG A 215 PHE A 217 0 SHEET 2 AG 2 LYS A 221 ASN A 224 -1 O LYS A 221 N PHE A 217 SHEET 1 AH 3 PRO A 345 GLY A 347 0 SHEET 2 AH 3 PHE A 370 THR A 372 -1 O PHE A 370 N ILE A 346 SHEET 3 AH 3 THR A 363 ALA A 365 -1 O LYS A 364 N VAL A 371 LINK NE2 HIS A 167 MG MG A 452 1655 1555 2.62 LINK OD2 ASP A 172 MG MG A 452 1655 1555 2.40 LINK OE1 GLU A 283 MG MG A 451 1555 1555 2.15 LINK OE2 GLU A 283 MG MG A 451 1555 1555 2.74 LINK OE2 GLU A 283 MG MG A 453 1555 1555 2.47 LINK OD1 ASN A 285 MG MG A 451 1555 1555 2.20 LINK MG MG A 451 O3B ADP A 461 1555 1555 2.47 LINK MG MG A 451 O HOH A2070 1555 1555 2.15 LINK MG MG A 452 O HOH A2038 1555 1655 2.57 LINK MG MG A 453 O2A ADP A 461 1555 1555 2.84 LINK MG MG A 453 O2B ADP A 461 1555 1555 2.52 CISPEP 1 ALA A 31 PRO A 32 0 -3.05 CISPEP 2 ALA A 138 PRO A 139 0 2.66 CISPEP 3 SER A 232 PRO A 233 0 4.52 CISPEP 4 ASP A 290 PRO A 291 0 8.65 CISPEP 5 TYR A 336 PRO A 337 0 4.48 SITE 1 AC1 17 LYS A 103 VAL A 141 LYS A 143 GLY A 150 SITE 2 AC1 17 VAL A 153 GLU A 185 GLU A 186 LEU A 188 SITE 3 AC1 17 GLU A 192 LYS A 214 MET A 273 ILE A 282 SITE 4 AC1 17 GLU A 283 MG A 451 MG A 453 HOH A2070 SITE 5 AC1 17 HOH A2071 SITE 1 AC2 4 GLU A 283 ASN A 285 ADP A 461 HOH A2070 SITE 1 AC3 3 HIS A 167 ASP A 172 HOH A2038 SITE 1 AC4 3 LYS A 214 GLU A 283 ADP A 461 CRYST1 56.990 84.410 85.720 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017547 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011847 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011666 0.00000