HEADER METAL BINDING 18-MAY-10 2XEV TITLE CRYSTAL STRUCTURE OF THE TPR DOMAIN OF XANTHOMONAS TITLE 2 CAMPESTRIS YBGF COMPND MOL_ID: 1; COMPND 2 MOLECULE: YBGF; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: TPR DOMAIN, RESIDUES 146-272; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XANTHOMONAS CAMPESTRIS; SOURCE 3 ORGANISM_TAXID: 339; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS TETRATRICOPEPTIDE, ALPHA-HELICAL, METAL BINDING EXPDTA X-RAY DIFFRACTION AUTHOR A.M.KRACHLER,A.SHARMA,C.KLEANTHOUS REVDAT 2 20-APR-11 2XEV 1 JRNL REMARK REVDAT 1 15-SEP-10 2XEV 0 JRNL AUTH A.M.KRACHLER,A.SHARMA,A.CAULDWELL,G.PAPADAKOS,C.KLEANTHOUS JRNL TITL TOLA MODULATES THE OLIGOMERIC STATUS OF YBGF IN THE JRNL TITL 2 BACTERIAL PERIPLASM. JRNL REF J.MOL.BIOL. V. 403 270 2010 JRNL REFN ISSN 0022-2836 JRNL PMID 20816983 JRNL DOI 10.1016/J.JMB.2010.08.050 REMARK 2 REMARK 2 RESOLUTION. 1.57 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.57 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 18.75 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 99.91 REMARK 3 NUMBER OF REFLECTIONS : 68305 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.20526 REMARK 3 R VALUE (WORKING SET) : 0.20407 REMARK 3 FREE R VALUE : 0.22813 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.0 REMARK 3 FREE R VALUE TEST SET COUNT : 3632 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.571 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.612 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4998 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.333 REMARK 3 BIN FREE R VALUE SET COUNT : 269 REMARK 3 BIN FREE R VALUE : 0.331 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3015 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 161 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.7 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.901 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00 REMARK 3 B22 (A**2) : 0.00 REMARK 3 B33 (A**2) : 0.00 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.078 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.079 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.049 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.349 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3098 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4228 ; 1.132 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 399 ; 4.220 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 164 ;38.538 ;24.329 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 490 ;13.885 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;17.631 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 443 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2490 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1905 ; 0.701 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3038 ; 1.370 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1193 ; 2.324 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1184 ; 3.823 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 2XEV COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-MAY-10. REMARK 100 THE PDBE ID CODE IS EBI-43961. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-AUG-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCAA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71985 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.57 REMARK 200 RESOLUTION RANGE LOW (A) : 40.32 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.6 REMARK 200 R MERGE (I) : 0.11 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.60 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.57 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.5 REMARK 200 R MERGE FOR SHELL (I) : 0.59 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.80 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 18.56000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 ALA A 1 REMARK 465 LEU A 123 REMARK 465 GLY A 124 REMARK 465 GLN A 125 REMARK 465 GLN A 126 REMARK 465 LEU A 127 REMARK 465 ARG A 128 REMARK 465 MET B 0 REMARK 465 GLN B 125 REMARK 465 GLN B 126 REMARK 465 LEU B 127 REMARK 465 ARG B 128 REMARK 465 MET C 0 REMARK 465 ALA C 1 REMARK 465 ARG C 2 REMARK 465 GLN C 125 REMARK 465 GLN C 126 REMARK 465 LEU C 127 REMARK 465 ARG C 128 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU B 123 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 33 53.89 -151.27 REMARK 500 LYS A 90 75.61 -103.05 REMARK 500 ASN C 33 49.28 -147.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1123 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 58 OE2 REMARK 620 2 GLU A 93 OE1 108.1 REMARK 620 3 GLU A 88 OE1 102.9 118.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1126 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 19 OD1 REMARK 620 2 ASP A 19 OD2 56.5 REMARK 620 3 GLU B 58 OE1 99.5 86.6 REMARK 620 4 GLU B 88 OE2 105.1 160.6 91.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C1126 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CL C1125 CL REMARK 620 2 GLU C 58 OE1 110.7 REMARK 620 3 GLU C 88 OE1 110.4 94.1 REMARK 620 4 ASP B 19 OD2 125.9 100.1 110.4 REMARK 620 5 ASP B 19 OD2 111.7 97.4 128.6 18.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1127 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 58 OE2 REMARK 620 2 GLU B 88 OE1 102.3 REMARK 620 3 GLU B 93 OE1 108.6 107.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C1127 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 19 OD2 REMARK 620 2 ASP C 19 OD1 58.8 REMARK 620 3 GLU A 58 OE1 92.6 105.9 REMARK 620 4 GLU A 88 OE2 156.5 98.0 90.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C1125 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C1126 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B1125 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C1127 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1123 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B1126 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B1127 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2WZ7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN OF E.COLI REMARK 900 YBGF REMARK 900 RELATED ID: 2XDJ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN OF E.COLI REMARK 900 YBGF DBREF 2XEV A 2 128 UNP Q8P6F4 Q8P6F4_XANCP 146 272 DBREF 2XEV B 2 128 UNP Q8P6F4 Q8P6F4_XANCP 146 272 DBREF 2XEV C 2 128 UNP Q8P6F4 Q8P6F4_XANCP 146 272 SEQADV 2XEV MET A 0 UNP Q8P6F4 EXPRESSION TAG SEQADV 2XEV ALA A 1 UNP Q8P6F4 EXPRESSION TAG SEQADV 2XEV MET B 0 UNP Q8P6F4 EXPRESSION TAG SEQADV 2XEV ALA B 1 UNP Q8P6F4 EXPRESSION TAG SEQADV 2XEV MET C 0 UNP Q8P6F4 EXPRESSION TAG SEQADV 2XEV ALA C 1 UNP Q8P6F4 EXPRESSION TAG SEQRES 1 A 129 MET ALA ARG THR ALA TYR ASN VAL ALA PHE ASP ALA LEU SEQRES 2 A 129 LYS ASN GLY LYS TYR ASP ASP ALA SER GLN LEU PHE LEU SEQRES 3 A 129 SER PHE LEU GLU LEU TYR PRO ASN GLY VAL TYR THR PRO SEQRES 4 A 129 ASN ALA LEU TYR TRP LEU GLY GLU SER TYR TYR ALA THR SEQRES 5 A 129 ARG ASN PHE GLN LEU ALA GLU ALA GLN PHE ARG ASP LEU SEQRES 6 A 129 VAL SER ARG TYR PRO THR HIS ASP LYS ALA ALA GLY GLY SEQRES 7 A 129 LEU LEU LYS LEU GLY LEU SER GLN TYR GLY GLU GLY LYS SEQRES 8 A 129 ASN THR GLU ALA GLN GLN THR LEU GLN GLN VAL ALA THR SEQRES 9 A 129 GLN TYR PRO GLY SER ASP ALA ALA ARG VAL ALA GLN GLU SEQRES 10 A 129 ARG LEU GLN SER ILE ARG LEU GLY GLN GLN LEU ARG SEQRES 1 B 129 MET ALA ARG THR ALA TYR ASN VAL ALA PHE ASP ALA LEU SEQRES 2 B 129 LYS ASN GLY LYS TYR ASP ASP ALA SER GLN LEU PHE LEU SEQRES 3 B 129 SER PHE LEU GLU LEU TYR PRO ASN GLY VAL TYR THR PRO SEQRES 4 B 129 ASN ALA LEU TYR TRP LEU GLY GLU SER TYR TYR ALA THR SEQRES 5 B 129 ARG ASN PHE GLN LEU ALA GLU ALA GLN PHE ARG ASP LEU SEQRES 6 B 129 VAL SER ARG TYR PRO THR HIS ASP LYS ALA ALA GLY GLY SEQRES 7 B 129 LEU LEU LYS LEU GLY LEU SER GLN TYR GLY GLU GLY LYS SEQRES 8 B 129 ASN THR GLU ALA GLN GLN THR LEU GLN GLN VAL ALA THR SEQRES 9 B 129 GLN TYR PRO GLY SER ASP ALA ALA ARG VAL ALA GLN GLU SEQRES 10 B 129 ARG LEU GLN SER ILE ARG LEU GLY GLN GLN LEU ARG SEQRES 1 C 129 MET ALA ARG THR ALA TYR ASN VAL ALA PHE ASP ALA LEU SEQRES 2 C 129 LYS ASN GLY LYS TYR ASP ASP ALA SER GLN LEU PHE LEU SEQRES 3 C 129 SER PHE LEU GLU LEU TYR PRO ASN GLY VAL TYR THR PRO SEQRES 4 C 129 ASN ALA LEU TYR TRP LEU GLY GLU SER TYR TYR ALA THR SEQRES 5 C 129 ARG ASN PHE GLN LEU ALA GLU ALA GLN PHE ARG ASP LEU SEQRES 6 C 129 VAL SER ARG TYR PRO THR HIS ASP LYS ALA ALA GLY GLY SEQRES 7 C 129 LEU LEU LYS LEU GLY LEU SER GLN TYR GLY GLU GLY LYS SEQRES 8 C 129 ASN THR GLU ALA GLN GLN THR LEU GLN GLN VAL ALA THR SEQRES 9 C 129 GLN TYR PRO GLY SER ASP ALA ALA ARG VAL ALA GLN GLU SEQRES 10 C 129 ARG LEU GLN SER ILE ARG LEU GLY GLN GLN LEU ARG HET CL C1125 1 HET ZN C1126 1 HET ZN B1125 1 HET ZN C1127 1 HET ZN A1123 1 HET ZN B1126 1 HET ZN B1127 1 HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION FORMUL 4 ZN 6(ZN 2+) FORMUL 5 CL CL 1- FORMUL 6 HOH *161(H2 O) HELIX 1 1 THR A 3 ASN A 14 1 12 HELIX 2 2 LYS A 16 TYR A 31 1 16 HELIX 3 3 TYR A 36 THR A 51 1 16 HELIX 4 4 ASN A 53 TYR A 68 1 16 HELIX 5 5 LYS A 73 GLU A 88 1 16 HELIX 6 6 LYS A 90 TYR A 105 1 16 HELIX 7 7 SER A 108 ARG A 122 1 15 HELIX 8 8 ARG B 2 ASN B 14 1 13 HELIX 9 9 LYS B 16 TYR B 31 1 16 HELIX 10 10 TYR B 36 THR B 51 1 16 HELIX 11 11 ASN B 53 TYR B 68 1 16 HELIX 12 12 LYS B 73 GLU B 88 1 16 HELIX 13 13 LYS B 90 TYR B 105 1 16 HELIX 14 14 SER B 108 LEU B 123 1 16 HELIX 15 15 THR C 3 ASN C 14 1 12 HELIX 16 16 LYS C 16 TYR C 31 1 16 HELIX 17 17 TYR C 36 THR C 51 1 16 HELIX 18 18 ASN C 53 TYR C 68 1 16 HELIX 19 19 LYS C 73 GLY C 89 1 17 HELIX 20 20 LYS C 90 TYR C 105 1 16 HELIX 21 21 SER C 108 LEU C 123 1 16 LINK ZN ZN A1123 OE2 GLU A 58 1555 1555 1.90 LINK ZN ZN A1123 OE1 GLU A 93 1555 1555 2.24 LINK ZN ZN A1123 OE1 GLU A 88 1555 1555 1.89 LINK ZN ZN B1126 OD1 ASP A 19 1555 1555 2.13 LINK ZN ZN B1126 OD2 ASP A 19 1555 1555 2.46 LINK ZN ZN B1126 OE1 GLU B 58 1555 1555 2.12 LINK ZN ZN B1126 OE2 GLU B 88 1555 1555 1.92 LINK ZN ZN B1127 OE1 GLU B 93 1555 1555 2.08 LINK ZN ZN B1127 OE1 GLU B 88 1555 1555 1.91 LINK ZN ZN B1127 OE2 GLU B 58 1555 1555 2.05 LINK ZN ZN C1126 OD2BASP B 19 1555 1555 2.03 LINK ZN ZN C1126 OD2AASP B 19 1555 1555 2.02 LINK ZN ZN C1126 OE1 GLU C 88 1555 1555 1.86 LINK ZN ZN C1126 OE1 GLU C 58 1555 1555 1.95 LINK ZN ZN C1126 CL CL C1125 1555 1555 2.24 LINK ZN ZN C1127 OD1 ASP C 19 1555 1555 2.18 LINK ZN ZN C1127 OE1 GLU A 58 1555 1545 2.16 LINK ZN ZN C1127 OE2 GLU A 88 1555 1545 1.97 LINK ZN ZN C1127 OD2 ASP C 19 1555 1555 2.29 SITE 1 AC1 7 LYS B 16 ASP B 19 GLU C 58 GLN C 85 SITE 2 AC1 7 GLU C 88 LYS C 90 ZN C1126 SITE 1 AC2 4 ASP B 19 GLU C 58 GLU C 88 CL C1125 SITE 1 AC3 6 GLN A 22 ASN B 53 PHE B 54 GLN B 55 SITE 2 AC3 6 LEU B 56 HOH B2036 SITE 1 AC4 4 GLU A 58 GLU A 88 ZN A1123 ASP C 19 SITE 1 AC5 4 GLU A 58 GLU A 88 GLU A 93 ZN C1127 SITE 1 AC6 4 ASP A 19 GLU B 58 GLU B 88 ZN B1127 SITE 1 AC7 6 GLU B 58 GLN B 85 GLU B 88 LYS B 90 SITE 2 AC7 6 GLU B 93 ZN B1126 CRYST1 86.360 37.120 90.610 90.00 117.14 90.00 P 1 21 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011579 0.000000 0.005936 0.00000 SCALE2 0.000000 0.026940 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012402 0.00000 MTRIX1 1 -0.468100 -0.128400 -0.874300 0.00000 1 MTRIX2 1 -0.041730 0.991500 -0.123300 0.00000 1 MTRIX3 1 0.882700 -0.021250 -0.469500 0.00000 1 MTRIX1 2 -0.626400 -0.111000 0.771500 26.22000 1 MTRIX2 2 -0.086800 0.993600 0.072470 0.00000 1 MTRIX3 2 -0.774600 -0.021570 -0.632000 0.00000 1 MTRIX1 3 -0.386400 -0.009069 -0.922300 0.00000 1 MTRIX2 3 0.010310 0.999800 -0.014150 0.00000 1 MTRIX3 3 0.922300 -0.014980 -0.386300 0.00000 1