HEADER HYDROLASE 30-JUN-10 2XIO TITLE STRUCTURE OF PUTATIVE DEOXYRIBONUCLEASE TATDN1 ISOFORM A COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE DEOXYRIBONUCLEASE TATDN1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 5-295; COMPND 5 SYNONYM: HEPATOCARCINOMA HIGH EXPRESSION PROTEIN; COMPND 6 EC: 3.1.21.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: R3-PL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PNIC-CTHF KEYWDS HYDROLASE, NUCLEASE EXPDTA X-RAY DIFFRACTION AUTHOR J.R.C.MUNIZ,R.COCKING,S.PURANIK,T.KROJER,J.RAYNOR,M.VOLLMAR,F.VON AUTHOR 2 DELFT,C.H.ARROWSMITH,A.M.EDWARDS,J.WEIGELT,C.BOUNTRA,W.W.YUE, AUTHOR 3 K.L.KAVANAGH,U.OPPERMANN REVDAT 4 13-NOV-24 2XIO 1 REMARK LINK REVDAT 3 24-JAN-18 2XIO 1 JRNL REVDAT 2 05-DEC-12 2XIO 1 AUTHOR JRNL REMARK VERSN REVDAT 1 14-JUL-10 2XIO 0 JRNL AUTH J.R.C.MUNIZ,R.COCKING,S.PURANIK,T.KROJER,J.RAYNOR,M.VOLLMAR, JRNL AUTH 2 F.VON DELFT,C.H.ARROWSMITH,A.M.EDWARDS,J.WEIGELT,C.BOUNTRA, JRNL AUTH 3 W.W.YUE,K.L.KAVANAGH,U.OPPERMANN JRNL TITL STRUCTURE OF PUTATIVE DEOXYRIBONUCLEASE TATDN1 ISOFORM A JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.8.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 17.42 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 94032 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4703 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.19 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.22 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 5112 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2241 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4862 REMARK 3 BIN R VALUE (WORKING SET) : 0.2235 REMARK 3 BIN FREE R VALUE : 0.2355 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.89 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 250 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2303 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 531 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.92 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.28220 REMARK 3 B22 (A**2) : -1.49830 REMARK 3 B33 (A**2) : 2.78050 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.146 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2573 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3502 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 938 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 71 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 384 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2573 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 334 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3602 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.08 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.17 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 15.04 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (A4 - 10) REMARK 3 ORIGIN FOR THE GROUP (A): 32.2647 16.5714 88.8705 REMARK 3 T TENSOR REMARK 3 T11: -0.0163 T22: -0.0016 REMARK 3 T33: -0.0168 T12: 0.0104 REMARK 3 T13: -0.0016 T23: -0.0094 REMARK 3 L TENSOR REMARK 3 L11: 2.9683 L22: 0.1497 REMARK 3 L33: 0.5022 L12: -0.7557 REMARK 3 L13: -1.0771 L23: -0.0964 REMARK 3 S TENSOR REMARK 3 S11: 0.0133 S12: 0.1210 S13: -0.0558 REMARK 3 S21: 0.0371 S22: -0.0175 S23: -0.0159 REMARK 3 S31: 0.0241 S32: 0.0092 S33: 0.0042 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (A11 - 19) REMARK 3 ORIGIN FOR THE GROUP (A): 19.5217 10.4762 100.9580 REMARK 3 T TENSOR REMARK 3 T11: -0.0011 T22: 0.0182 REMARK 3 T33: -0.0209 T12: -0.0005 REMARK 3 T13: -0.0046 T23: 0.0198 REMARK 3 L TENSOR REMARK 3 L11: 0.5071 L22: 2.5413 REMARK 3 L33: 1.0359 L12: 0.9507 REMARK 3 L13: -0.3617 L23: 0.5707 REMARK 3 S TENSOR REMARK 3 S11: -0.0155 S12: 0.0622 S13: 0.0170 REMARK 3 S21: 0.1389 S22: 0.0218 S23: 0.1081 REMARK 3 S31: -0.0444 S32: 0.0521 S33: -0.0063 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (A20 - 37) REMARK 3 ORIGIN FOR THE GROUP (A): 17.1482 3.1464 100.7930 REMARK 3 T TENSOR REMARK 3 T11: 0.0278 T22: -0.0161 REMARK 3 T33: -0.0188 T12: -0.0034 REMARK 3 T13: -0.0026 T23: 0.0094 REMARK 3 L TENSOR REMARK 3 L11: 1.9842 L22: 1.3124 REMARK 3 L33: 2.8207 L12: 0.2911 REMARK 3 L13: -0.9919 L23: -0.0526 REMARK 3 S TENSOR REMARK 3 S11: -0.0184 S12: -0.1161 S13: 0.0180 REMARK 3 S21: 0.2055 S22: 0.0200 S23: 0.0424 REMARK 3 S31: 0.1579 S32: -0.1673 S33: -0.0016 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (A38 - 46) REMARK 3 ORIGIN FOR THE GROUP (A): 31.1908 8.8071 89.8319 REMARK 3 T TENSOR REMARK 3 T11: -0.0029 T22: -0.0129 REMARK 3 T33: -0.0017 T12: 0.0176 REMARK 3 T13: -0.0025 T23: -0.0008 REMARK 3 L TENSOR REMARK 3 L11: 1.2223 L22: 0.7149 REMARK 3 L33: 1.3961 L12: -0.3877 REMARK 3 L13: -1.1302 L23: -0.3764 REMARK 3 S TENSOR REMARK 3 S11: -0.0204 S12: -0.0008 S13: -0.1170 REMARK 3 S21: -0.0293 S22: 0.0002 S23: 0.0091 REMARK 3 S31: 0.0177 S32: 0.0111 S33: 0.0203 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (A47 - 84) REMARK 3 ORIGIN FOR THE GROUP (A): 26.2172 18.7597 106.8960 REMARK 3 T TENSOR REMARK 3 T11: 0.0180 T22: 0.0014 REMARK 3 T33: -0.0405 T12: 0.0063 REMARK 3 T13: -0.0039 T23: 0.0039 REMARK 3 L TENSOR REMARK 3 L11: 0.6244 L22: 1.1692 REMARK 3 L33: 1.4275 L12: -0.4619 REMARK 3 L13: -0.0613 L23: 0.6658 REMARK 3 S TENSOR REMARK 3 S11: -0.0175 S12: -0.0784 S13: -0.0543 REMARK 3 S21: 0.1808 S22: 0.0361 S23: 0.0138 REMARK 3 S31: 0.1659 S32: -0.0844 S33: -0.0186 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (A85 - 105) REMARK 3 ORIGIN FOR THE GROUP (A): 28.3160 27.4244 116.4660 REMARK 3 T TENSOR REMARK 3 T11: 0.0581 T22: 0.0109 REMARK 3 T33: -0.0529 T12: 0.0156 REMARK 3 T13: -0.0287 T23: -0.0213 REMARK 3 L TENSOR REMARK 3 L11: 0.7973 L22: 0.9977 REMARK 3 L33: 2.7723 L12: -0.0766 REMARK 3 L13: -0.6766 L23: 1.0829 REMARK 3 S TENSOR REMARK 3 S11: -0.0139 S12: -0.0755 S13: 0.0448 REMARK 3 S21: 0.2115 S22: 0.0774 S23: -0.0620 REMARK 3 S31: -0.0820 S32: 0.0557 S33: -0.0635 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (A106 - 150) REMARK 3 ORIGIN FOR THE GROUP (A): 23.8726 32.3858 105.6400 REMARK 3 T TENSOR REMARK 3 T11: -0.0019 T22: -0.0111 REMARK 3 T33: -0.0514 T12: 0.0269 REMARK 3 T13: -0.0030 T23: -0.0224 REMARK 3 L TENSOR REMARK 3 L11: 0.8413 L22: 0.8114 REMARK 3 L33: 1.2800 L12: -0.4305 REMARK 3 L13: -0.0061 L23: 0.2558 REMARK 3 S TENSOR REMARK 3 S11: -0.0174 S12: -0.1275 S13: 0.0834 REMARK 3 S21: 0.0834 S22: 0.0494 S23: -0.0329 REMARK 3 S31: -0.1675 S32: -0.0911 S33: -0.0321 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (A151 - 167) REMARK 3 ORIGIN FOR THE GROUP (A): 25.0845 40.1502 99.4094 REMARK 3 T TENSOR REMARK 3 T11: 0.0710 T22: -0.0571 REMARK 3 T33: -0.0266 T12: 0.0400 REMARK 3 T13: 0.0236 T23: -0.0151 REMARK 3 L TENSOR REMARK 3 L11: 1.3043 L22: 1.4369 REMARK 3 L33: 1.4734 L12: -0.2792 REMARK 3 L13: -0.6960 L23: -0.4656 REMARK 3 S TENSOR REMARK 3 S11: 0.0474 S12: 0.0364 S13: 0.2166 REMARK 3 S21: -0.0213 S22: 0.0204 S23: -0.0376 REMARK 3 S31: -0.3601 S32: -0.0775 S33: -0.0678 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (A168 - 185) REMARK 3 ORIGIN FOR THE GROUP (A): 24.3593 33.7263 91.1156 REMARK 3 T TENSOR REMARK 3 T11: 0.0265 T22: -0.0295 REMARK 3 T33: -0.0141 T12: 0.0112 REMARK 3 T13: 0.0090 T23: -0.0069 REMARK 3 L TENSOR REMARK 3 L11: 0.8663 L22: 2.0570 REMARK 3 L33: 1.7716 L12: 0.5935 REMARK 3 L13: -0.0409 L23: 0.6646 REMARK 3 S TENSOR REMARK 3 S11: 0.0061 S12: 0.0104 S13: 0.1072 REMARK 3 S21: -0.1212 S22: 0.0105 S23: 0.1017 REMARK 3 S31: -0.2681 S32: 0.0234 S33: -0.0166 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (A186 - 213) REMARK 3 ORIGIN FOR THE GROUP (A): 24.3267 31.3491 85.8301 REMARK 3 T TENSOR REMARK 3 T11: 0.0339 T22: -0.0122 REMARK 3 T33: 0.0194 T12: 0.0103 REMARK 3 T13: 0.0081 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 0.7364 L22: 0.6789 REMARK 3 L33: 0.8265 L12: -0.2066 REMARK 3 L13: 0.1480 L23: -0.0846 REMARK 3 S TENSOR REMARK 3 S11: 0.0029 S12: 0.0022 S13: 0.1771 REMARK 3 S21: -0.0494 S22: -0.0230 S23: 0.0016 REMARK 3 S31: -0.1533 S32: -0.0030 S33: 0.0200 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (A214 - 225) REMARK 3 ORIGIN FOR THE GROUP (A): 25.9336 22.9216 89.8422 REMARK 3 T TENSOR REMARK 3 T11: 0.0023 T22: -0.0061 REMARK 3 T33: -0.0251 T12: 0.0103 REMARK 3 T13: 0.0019 T23: -0.0079 REMARK 3 L TENSOR REMARK 3 L11: 1.5641 L22: 1.0632 REMARK 3 L33: 1.8490 L12: 0.3108 REMARK 3 L13: -0.9341 L23: -0.4780 REMARK 3 S TENSOR REMARK 3 S11: 0.0536 S12: 0.0034 S13: 0.0652 REMARK 3 S21: 0.0498 S22: 0.0063 S23: -0.0190 REMARK 3 S31: -0.1026 S32: -0.0064 S33: -0.0598 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (A226 - 244) REMARK 3 ORIGIN FOR THE GROUP (A): 16.5591 14.5398 80.5519 REMARK 3 T TENSOR REMARK 3 T11: -0.0406 T22: -0.0143 REMARK 3 T33: -0.0356 T12: 0.0027 REMARK 3 T13: -0.0108 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 0.5332 L22: 1.5023 REMARK 3 L33: 0.2039 L12: -0.1460 REMARK 3 L13: 0.0376 L23: 0.3510 REMARK 3 S TENSOR REMARK 3 S11: 0.0173 S12: 0.0210 S13: 0.0142 REMARK 3 S21: -0.0344 S22: -0.0128 S23: 0.0454 REMARK 3 S31: 0.0118 S32: -0.0322 S33: -0.0045 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (A245 - 257) REMARK 3 ORIGIN FOR THE GROUP (A): 13.5511 1.9656 90.4375 REMARK 3 T TENSOR REMARK 3 T11: 0.0114 T22: 0.0012 REMARK 3 T33: -0.0089 T12: -0.0148 REMARK 3 T13: -0.0049 T23: 0.0122 REMARK 3 L TENSOR REMARK 3 L11: 2.4278 L22: 0.5046 REMARK 3 L33: 1.9080 L12: 1.4475 REMARK 3 L13: 1.3129 L23: 0.1541 REMARK 3 S TENSOR REMARK 3 S11: 0.0454 S12: -0.0672 S13: -0.0706 REMARK 3 S21: 0.0567 S22: 0.0502 S23: 0.0075 REMARK 3 S31: 0.1427 S32: -0.1993 S33: -0.0957 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (A258 - 290) REMARK 3 ORIGIN FOR THE GROUP (A): 29.0437 19.2896 82.6307 REMARK 3 T TENSOR REMARK 3 T11: -0.0122 T22: -0.0028 REMARK 3 T33: -0.0233 T12: 0.0099 REMARK 3 T13: -0.0001 T23: -0.0129 REMARK 3 L TENSOR REMARK 3 L11: 1.1394 L22: 0.4157 REMARK 3 L33: 0.8314 L12: -0.0027 REMARK 3 L13: -0.1438 L23: -0.0241 REMARK 3 S TENSOR REMARK 3 S11: 0.0400 S12: 0.0777 S13: 0.0223 REMARK 3 S21: 0.0018 S22: 0.0089 S23: -0.0313 REMARK 3 S31: -0.0395 S32: 0.0393 S33: -0.0489 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (A291 - 296) REMARK 3 ORIGIN FOR THE GROUP (A): 39.3332 24.6335 96.1988 REMARK 3 T TENSOR REMARK 3 T11: 0.0079 T22: 0.0322 REMARK 3 T33: 0.0050 T12: -0.0106 REMARK 3 T13: -0.0166 T23: -0.0219 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.1994 REMARK 3 L33: 0.3517 L12: 0.4649 REMARK 3 L13: -1.0192 L23: 0.4095 REMARK 3 S TENSOR REMARK 3 S11: -0.0265 S12: 0.0030 S13: -0.0088 REMARK 3 S21: 0.0282 S22: 0.0046 S23: -0.0533 REMARK 3 S31: -0.0105 S32: 0.1217 S33: 0.0220 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2XIO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1290044414. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97630 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 94152 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.190 REMARK 200 RESOLUTION RANGE LOW (A) : 28.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.100 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.02000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.19 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.56000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES 6.5;12% W/V PEG 20K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.24000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.62000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.47000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 77.62000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.24000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 25.47000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 297 REMARK 465 ALA A 298 REMARK 465 GLU A 299 REMARK 465 ASN A 300 REMARK 465 LEU A 301 REMARK 465 TYR A 302 REMARK 465 PHE A 303 REMARK 465 GLN A 304 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 23 CD NE CZ NH1 NH2 REMARK 470 LYS A 27 CG CD CE NZ REMARK 470 ARG A 80 NE CZ NH1 NH2 REMARK 470 LYS A 86 CE NZ REMARK 470 LYS A 247 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2226 O HOH A 2270 4456 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 23 51.46 39.61 REMARK 500 ASN A 88 118.17 94.29 REMARK 500 SER A 153 27.33 -155.88 REMARK 500 ASP A 177 20.05 -140.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2016 DISTANCE = 6.69 ANGSTROMS REMARK 525 HOH A2048 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH A2068 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH A2071 DISTANCE = 7.12 ANGSTROMS REMARK 525 HOH A2072 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH A2078 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH A2080 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH A2081 DISTANCE = 7.77 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1297 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 230 O REMARK 620 2 HIS A 232 O 103.9 REMARK 620 3 SER A 235 OG 90.8 87.7 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1297 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 1298 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1299 DBREF 2XIO A 5 295 UNP Q6P1N9 TATD1_HUMAN 5 295 SEQADV 2XIO MET A 4 UNP Q6P1N9 EXPRESSION TAG SEQADV 2XIO VAL A 296 UNP Q6P1N9 EXPRESSION TAG SEQADV 2XIO ILE A 297 UNP Q6P1N9 EXPRESSION TAG SEQADV 2XIO ALA A 298 UNP Q6P1N9 EXPRESSION TAG SEQADV 2XIO GLU A 299 UNP Q6P1N9 EXPRESSION TAG SEQADV 2XIO ASN A 300 UNP Q6P1N9 EXPRESSION TAG SEQADV 2XIO LEU A 301 UNP Q6P1N9 EXPRESSION TAG SEQADV 2XIO TYR A 302 UNP Q6P1N9 EXPRESSION TAG SEQADV 2XIO PHE A 303 UNP Q6P1N9 EXPRESSION TAG SEQADV 2XIO GLN A 304 UNP Q6P1N9 EXPRESSION TAG SEQADV 2XIO THR A 161 UNP Q6P1N9 MET 161 CONFLICT SEQRES 1 A 301 MET LYS PHE ILE ASP ILE GLY ILE ASN LEU THR ASP PRO SEQRES 2 A 301 MET PHE ARG GLY ILE TYR ARG GLY VAL GLN LYS HIS GLN SEQRES 3 A 301 ASP ASP LEU GLN ASP VAL ILE GLY ARG ALA VAL GLU ILE SEQRES 4 A 301 GLY VAL LYS LYS PHE MET ILE THR GLY GLY ASN LEU GLN SEQRES 5 A 301 ASP SER LYS ASP ALA LEU HIS LEU ALA GLN THR ASN GLY SEQRES 6 A 301 MET PHE PHE SER THR VAL GLY CYS HIS PRO THR ARG CYS SEQRES 7 A 301 GLY GLU PHE GLU LYS ASN ASN PRO ASP LEU TYR LEU LYS SEQRES 8 A 301 GLU LEU LEU ASN LEU ALA GLU ASN ASN LYS GLY LYS VAL SEQRES 9 A 301 VAL ALA ILE GLY GLU CYS GLY LEU ASP PHE ASP ARG LEU SEQRES 10 A 301 GLN PHE CYS PRO LYS ASP THR GLN LEU LYS TYR PHE GLU SEQRES 11 A 301 LYS GLN PHE GLU LEU SER GLU GLN THR LYS LEU PRO MET SEQRES 12 A 301 PHE LEU HIS CYS ARG ASN SER HIS ALA GLU PHE LEU ASP SEQRES 13 A 301 ILE THR LYS ARG ASN ARG ASP ARG CYS VAL GLY GLY VAL SEQRES 14 A 301 VAL HIS SER PHE ASP GLY THR LYS GLU ALA ALA ALA ALA SEQRES 15 A 301 LEU ILE ASP LEU ASP LEU TYR ILE GLY PHE ASN GLY CYS SEQRES 16 A 301 SER LEU LYS THR GLU ALA ASN LEU GLU VAL LEU LYS SER SEQRES 17 A 301 ILE PRO SER GLU LYS LEU MET ILE GLU THR ASP ALA PRO SEQRES 18 A 301 TRP CYS GLY VAL LYS SER THR HIS ALA GLY SER LYS TYR SEQRES 19 A 301 ILE ARG THR ALA PHE PRO THR LYS LYS LYS TRP GLU SER SEQRES 20 A 301 GLY HIS CYS LEU LYS ASP ARG ASN GLU PRO CYS HIS ILE SEQRES 21 A 301 ILE GLN ILE LEU GLU ILE MET SER ALA VAL ARG ASP GLU SEQRES 22 A 301 ASP PRO LEU GLU LEU ALA ASN THR LEU TYR ASN ASN THR SEQRES 23 A 301 ILE LYS VAL PHE PHE PRO VAL ILE ALA GLU ASN LEU TYR SEQRES 24 A 301 PHE GLN HET NA A1297 1 HET NI A1298 1 HET EDO A1299 4 HETNAM NA SODIUM ION HETNAM NI NICKEL (II) ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 NA NA 1+ FORMUL 3 NI NI 2+ FORMUL 4 EDO C2 H6 O2 FORMUL 5 HOH *531(H2 O) HELIX 1 1 ASP A 15 ARG A 19 5 5 HELIX 2 2 ASP A 31 GLY A 43 1 13 HELIX 3 3 ASN A 53 GLN A 65 1 13 HELIX 4 4 HIS A 77 CYS A 81 5 5 HELIX 5 5 GLY A 82 ASN A 88 1 7 HELIX 6 6 ASN A 88 ASN A 102 1 15 HELIX 7 7 PRO A 124 GLN A 135 1 12 HELIX 8 8 GLN A 135 LYS A 143 1 9 HELIX 9 9 SER A 153 ASN A 164 1 12 HELIX 10 10 ARG A 165 CYS A 168 5 4 HELIX 11 11 THR A 179 LEU A 189 1 11 HELIX 12 12 ASN A 196 LEU A 200 5 5 HELIX 13 13 THR A 202 SER A 211 1 10 HELIX 14 14 PRO A 213 GLU A 215 5 3 HELIX 15 15 GLY A 234 ILE A 238 5 5 HELIX 16 16 GLU A 259 CYS A 261 5 3 HELIX 17 17 HIS A 262 ASP A 275 1 14 HELIX 18 18 ASP A 277 PHE A 294 1 18 SHEET 1 AA 8 PHE A 6 ILE A 11 0 SHEET 2 AA 8 VAL A 44 ILE A 49 1 N LYS A 45 O PHE A 6 SHEET 3 AA 8 PHE A 70 VAL A 74 1 O PHE A 71 N ILE A 49 SHEET 4 AA 8 VAL A 107 ASP A 116 1 N VAL A 108 O SER A 72 SHEET 5 AA 8 MET A 146 ARG A 151 1 O PHE A 147 N CYS A 113 SHEET 6 AA 8 GLY A 171 VAL A 173 1 O VAL A 172 N LEU A 148 SHEET 7 AA 8 TYR A 192 PHE A 195 1 O TYR A 192 N VAL A 173 SHEET 8 AA 8 LEU A 217 ILE A 219 1 O MET A 218 N PHE A 195 SHEET 1 AB 2 ILE A 21 TYR A 22 0 SHEET 2 AB 2 VAL A 25 GLN A 26 -1 O VAL A 25 N TYR A 22 SHEET 1 AC 2 THR A 244 LYS A 245 0 SHEET 2 AC 2 CYS A 253 LEU A 254 1 O CYS A 253 N LYS A 245 SSBOND 1 CYS A 198 CYS A 226 1555 1555 2.06 LINK O SER A 230 NA NA A1297 1555 1555 2.32 LINK O HIS A 232 NA NA A1297 1555 1555 2.40 LINK OG ASER A 235 NA NA A1297 1555 1555 2.31 LINK NE2 HIS A 252 NI NI A1298 1555 1555 1.99 CISPEP 1 GLY A 111 GLU A 112 0 3.63 CISPEP 2 ALA A 223 PRO A 224 0 14.11 SITE 1 AC1 3 SER A 230 HIS A 232 SER A 235 SITE 1 AC2 1 HIS A 252 SITE 1 AC3 11 GLU A 112 HIS A 149 ARG A 151 HIS A 174 SITE 2 AC3 11 SER A 175 ASP A 222 HOH A2213 HOH A2346 SITE 3 AC3 11 HOH A2433 HOH A2530 HOH A2531 CRYST1 38.480 50.940 155.240 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025988 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019631 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006442 0.00000