data_2XJH # _entry.id 2XJH # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2XJH pdb_00002xjh 10.2210/pdb2xjh/pdb PDBE EBI-44494 ? ? WWPDB D_1290044494 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-02-02 2 'Structure model' 1 1 2012-03-28 3 'Structure model' 1 2 2012-05-09 4 'Structure model' 1 3 2012-11-30 5 'Structure model' 1 4 2013-07-24 6 'Structure model' 2 0 2018-06-27 7 'Structure model' 2 1 2019-05-22 8 'Structure model' 2 2 2024-10-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Atomic model' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Non-polymer description' 5 2 'Structure model' Other 6 2 'Structure model' 'Refinement description' 7 2 'Structure model' 'Structure summary' 8 3 'Structure model' Other 9 4 'Structure model' Other 10 5 'Structure model' 'Non-polymer description' 11 5 'Structure model' 'Version format compliance' 12 6 'Structure model' 'Atomic model' 13 6 'Structure model' 'Data collection' 14 6 'Structure model' 'Derived calculations' 15 6 'Structure model' 'Refinement description' 16 6 'Structure model' 'Structure summary' 17 7 'Structure model' 'Data collection' 18 7 'Structure model' 'Derived calculations' 19 7 'Structure model' 'Refinement description' 20 8 'Structure model' 'Data collection' 21 8 'Structure model' 'Database references' 22 8 'Structure model' 'Derived calculations' 23 8 'Structure model' Other 24 8 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 6 'Structure model' atom_site 2 6 'Structure model' atom_site_anisotrop 3 6 'Structure model' pdbx_molecule 4 6 'Structure model' pdbx_validate_rmsd_bond 5 6 'Structure model' software 6 6 'Structure model' struct_conn 7 7 'Structure model' refine 8 7 'Structure model' struct_conn 9 8 'Structure model' chem_comp_atom 10 8 'Structure model' chem_comp_bond 11 8 'Structure model' database_2 12 8 'Structure model' pdbx_database_status 13 8 'Structure model' pdbx_entry_details 14 8 'Structure model' pdbx_modification_feature 15 8 'Structure model' pdbx_struct_conn_angle 16 8 'Structure model' struct_conn 17 8 'Structure model' struct_conn_type 18 8 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 6 'Structure model' '_software.name' 2 7 'Structure model' '_refine.pdbx_ls_cross_valid_method' 3 7 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 8 'Structure model' '_database_2.pdbx_DOI' 5 8 'Structure model' '_database_2.pdbx_database_accession' 6 8 'Structure model' '_pdbx_database_status.status_code_sf' 7 8 'Structure model' '_pdbx_entry_details.has_protein_modification' 8 8 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 9 8 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 10 8 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 11 8 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 12 8 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 13 8 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 14 8 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 15 8 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 16 8 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 17 8 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 18 8 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 19 8 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 20 8 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 21 8 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 22 8 'Structure model' '_pdbx_struct_conn_angle.ptnr2_symmetry' 23 8 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 24 8 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 25 8 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 26 8 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 27 8 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 28 8 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 29 8 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 30 8 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 31 8 'Structure model' '_pdbx_struct_conn_angle.value' 32 8 'Structure model' '_struct_conn.conn_type_id' 33 8 'Structure model' '_struct_conn.id' 34 8 'Structure model' '_struct_conn.pdbx_dist_value' 35 8 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 36 8 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 37 8 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 38 8 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 39 8 'Structure model' '_struct_conn.ptnr1_label_asym_id' 40 8 'Structure model' '_struct_conn.ptnr1_label_atom_id' 41 8 'Structure model' '_struct_conn.ptnr1_label_comp_id' 42 8 'Structure model' '_struct_conn.ptnr1_label_seq_id' 43 8 'Structure model' '_struct_conn.ptnr1_symmetry' 44 8 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 45 8 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 46 8 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 47 8 'Structure model' '_struct_conn.ptnr2_label_asym_id' 48 8 'Structure model' '_struct_conn.ptnr2_label_atom_id' 49 8 'Structure model' '_struct_conn.ptnr2_label_comp_id' 50 8 'Structure model' '_struct_conn.ptnr2_label_seq_id' 51 8 'Structure model' '_struct_conn.ptnr2_symmetry' 52 8 'Structure model' '_struct_conn_type.id' 53 8 'Structure model' '_struct_site.pdbx_auth_asym_id' 54 8 'Structure model' '_struct_site.pdbx_auth_comp_id' 55 8 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2XJH _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2010-07-06 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2XJI _pdbx_database_related.content_type unspecified _pdbx_database_related.details 'STRUCTURE AND COPPER-BINDING PROPERTIES OF METHANOBACTINS FROM METHYLOSINUS TRICHOSPORIUM OB3B' # loop_ _audit_author.name _audit_author.pdbx_ordinal 'El-Ghazouani, A.' 1 'Basle, A.' 2 'Firbank, S.J.' 3 'Knapp, C.W.' 4 'Gray, J.' 5 'Graham, D.W.' 6 'Dennison, C.' 7 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Copper-Binding Properties and Structures of Methanobactins from Methylosinus Trichosporium Ob3B.' Inorg.Chem. 50 1378 ? 2011 INOCAJ US 0020-1669 0009 ? 21254756 10.1021/IC101965J 1 'Methanobactin, a Copper-Acquisition Compound from Methane-Oxidizing Bacteria.' Science 305 1612 ? 2004 SCIEAS US 0036-8075 0038 ? 15361623 10.1126/SCIENCE.1098322 2 'NMR, Mass Spectrometry and Chemical Evidence Reveal a Different Chemical Structure for Methanobactin that Contains Oxazolone Rings.' J.Am.Chem.Soc. 130 12604 ? 2008 JACSAT US 0002-7863 0004 ? 18729522 10.1021/JA804747D # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'El Ghazouani, A.' 1 ? primary 'Basle, A.' 2 ? primary 'Firbank, S.J.' 3 ? primary 'Knapp, C.W.' 4 ? primary 'Gray, J.' 5 ? primary 'Graham, D.W.' 6 ? primary 'Dennison, C.' 7 ? 1 'Kim, H.J.' 8 ? 1 'Graham, D.W.' 9 ? 1 'Dispirito, A.A.' 10 ? 1 'Alterman, M.A.' 11 ? 1 'Galeva, N.' 12 ? 1 'Larive, C.K.' 13 ? 1 'Asunskis, D.' 14 ? 1 'Sherwood, P.M.A.' 15 ? 2 'Behling, L.A.' 16 ? 2 'Hartsel, S.C.' 17 ? 2 'Lewis, D.E.' 18 ? 2 'Dispirito, A.A.' 19 ? 2 'Choi, D.W.' 20 ? 2 'Masterson, L.R.' 21 ? 2 'Veglia, G.' 22 ? 2 'Gallagher, W.H.' 23 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'METHANOBACTIN MB-OB3B' 1161.373 2 '1.11.1.-, 1.15.1.1' ? ? ? 2 non-polymer syn 'SODIUM ION' 22.990 3 ? ? ? ? 3 non-polymer syn 'COPPER (II) ION' 63.546 2 ? ? ? ? 4 water nat water 18.015 12 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'COPPER-BINDING COMPOUND, CBC, HYDROGEN PEROXIDE REDUCTASE, SUPEROXIDE DISMUTASE, MINUS-MET METHANOBACTIN' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(COI)(BB9)GSCYP(BB9)SCM' _entity_poly.pdbx_seq_one_letter_code_can XCGSCYPCSCM _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SODIUM ION' NA 3 'COPPER (II) ION' CU 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 COI n 1 2 BB9 n 1 3 GLY n 1 4 SER n 1 5 CYS n 1 6 TYR n 1 7 PRO n 1 8 BB9 n 1 9 SER n 1 10 CYS n 1 11 MET n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'METHYLOSINUS TRICHOSPORIUM' _entity_src_nat.pdbx_ncbi_taxonomy_id 595536 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain OB3B _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details 'NCIMB 11131' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight BB9 'peptide linking' n '(2Z)-2-amino-3-sulfanylprop-2-enoic acid' ? 'C3 H5 N O2 S' 119.142 COI non-polymer . '2-OXO-4-METHYLPENTANOIC ACID' 'alpha-ketoisocaproic acid' 'C6 H10 O3' 130.142 CU non-polymer . 'COPPER (II) ION' ? 'Cu 2' 63.546 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 COI 1 0 0 COI COI A . n A 1 2 BB9 2 1 1 BB9 BB9 A . n A 1 3 GLY 3 2 2 GLY GLY A . n A 1 4 SER 4 3 3 SER SER A . n A 1 5 CYS 5 4 4 CYS CYS A . n A 1 6 TYR 6 5 5 TYR TYR A . n A 1 7 PRO 7 6 6 PRO PRO A . n A 1 8 BB9 8 7 7 BB9 BB9 A . n A 1 9 SER 9 8 8 SER SER A . n A 1 10 CYS 10 9 9 CYS CYS A . n A 1 11 MET 11 10 10 MET MET A . n B 1 1 COI 1 0 0 COI COI B . n B 1 2 BB9 2 1 1 BB9 BB9 B . n B 1 3 GLY 3 2 2 GLY GLY B . n B 1 4 SER 4 3 3 SER SER B . n B 1 5 CYS 5 4 4 CYS CYS B . n B 1 6 TYR 6 5 5 TYR TYR B . n B 1 7 PRO 7 6 6 PRO PRO B . n B 1 8 BB9 8 7 7 BB9 BB9 B . n B 1 9 SER 9 8 8 SER SER B . n B 1 10 CYS 10 9 9 CYS CYS B . n B 1 11 MET 11 10 10 MET MET B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA 1 1002 1002 NA NA A . D 2 NA 1 1003 1003 NA NA A . E 3 CU 1 1001 1001 CU CU A . F 2 NA 1 1002 1002 NA NA B . G 3 CU 1 1001 1001 CU CU B . H 4 HOH 1 2001 2001 HOH HOH A . H 4 HOH 2 2002 2002 HOH HOH A . H 4 HOH 3 2003 2003 HOH HOH A . H 4 HOH 4 2004 2004 HOH HOH A . H 4 HOH 5 2005 2005 HOH HOH A . I 4 HOH 1 2001 2001 HOH HOH B . I 4 HOH 2 2002 2002 HOH HOH B . I 4 HOH 3 2003 2003 HOH HOH B . I 4 HOH 4 2004 2004 HOH HOH B . I 4 HOH 5 2005 2005 HOH HOH B . I 4 HOH 6 2006 2006 HOH HOH B . I 4 HOH 7 2007 2007 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal _software.date _software.type _software.location _software.language SHELXL-97 refinement . ? 1 ? ? ? ? iMOSFLM 'data reduction' . ? 2 ? ? ? ? SCALA 'data scaling' . ? 3 ? ? ? ? SHELXDE phasing . ? 4 ? ? ? ? # _cell.entry_id 2XJH _cell.length_a 29.475 _cell.length_b 29.475 _cell.length_c 29.480 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XJH _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 # _exptl.entry_id 2XJH _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.41 _exptl_crystal.density_percent_sol 13 _exptl_crystal.description 'PREVIOUSLY SOLVED MODEL CCDC BIDLOQ WAS MANUALLY FITTED INTO DENSITY' _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '4M SODIUM FORMATE, pH 7.5' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date 2009-08-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.91 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I04' _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I04 _diffrn_source.pdbx_wavelength 0.91 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2XJH _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.84 _reflns.d_resolution_high 0.92 _reflns.number_obs 9025 _reflns.number_all ? _reflns.percent_possible_obs 95.7 _reflns.pdbx_Rmerge_I_obs 0.06 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 25.10 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 11.3 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 0.92 _reflns_shell.d_res_low 0.97 _reflns_shell.percent_possible_all 78.8 _reflns_shell.Rmerge_I_obs 0.34 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 5.50 _reflns_shell.pdbx_redundancy 5.5 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2XJH _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all 8586 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 0.92 _refine.ls_percent_reflns_obs 95.7 _refine.ls_R_factor_obs 0.1245 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free 0.1405 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.00 _refine.ls_number_reflns_R_free 439 _refine.ls_number_parameters 1623 _refine.ls_number_restraints 1871 _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.details ? _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'ENGH AND HUBER' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details 'THIN SHELL' _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 2XJH _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues 13 _refine_analyze.occupancy_sum_hydrogen 92.00 _refine_analyze.occupancy_sum_non_hydrogen 165.46 # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 152 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 12 _refine_hist.number_atoms_total 169 _refine_hist.d_res_high 0.92 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.020 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.051 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes 0.0349 ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol 0.140 ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol 0.148 ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr 0.045 ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt 0.006 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt 0.052 ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps 0.000 ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.entry_id 2XJH _pdbx_refine.R_factor_all_no_cutoff ? _pdbx_refine.R_factor_obs_no_cutoff 0.1245 _pdbx_refine.free_R_factor_no_cutoff 0.1405 _pdbx_refine.free_R_error_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff 5.00 _pdbx_refine.free_R_val_test_set_ct_no_cutoff 439 _pdbx_refine.R_factor_all_4sig_cutoff ? _pdbx_refine.R_factor_obs_4sig_cutoff 0.1143 _pdbx_refine.free_R_factor_4sig_cutoff 0.1245 _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff 5.00 _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff 382 _pdbx_refine.number_reflns_obs_4sig_cutoff 7726 # _database_PDB_matrix.entry_id 2XJH _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 2XJH _struct.title 'Structure and Copper-binding Properties of Methanobactins from Methylosinus trichosporium OB3b' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2XJH _struct_keywords.pdbx_keywords OXIDOREDUCTASE _struct_keywords.text 'OXIDOREDUCTASE, METAL TRANSPORT, METHANOTROPHS, OXAZALONE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 2 ? G N N 3 ? H N N 4 ? I N N 4 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code MBCTN_METTR _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession E3YBA4 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2XJH A 1 ? 11 ? E3YBA4 20 ? 30 ? 0 10 2 1 2XJH B 1 ? 11 ? E3YBA4 20 ? 30 ? 0 10 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA monomeric 1 2 author_and_software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,E,H 2 1 B,F,G,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 5 SG ? ? ? 1_555 A CYS 10 SG ? ? A CYS 4 A CYS 9 1_555 ? ? ? ? ? ? ? 2.033 ? ? disulf2 disulf ? ? B CYS 5 SG ? ? ? 1_555 B CYS 10 SG ? ? B CYS 4 B CYS 9 1_555 ? ? ? ? ? ? ? 2.049 ? ? covale1 covale both ? A COI 1 C1 ? ? ? 1_555 A BB9 2 N ? ? A COI 0 A BB9 1 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale2 covale both ? A COI 1 O2 ? ? ? 1_555 A BB9 2 C ? ? A COI 0 A BB9 1 1_555 ? ? ? ? ? ? ? 1.410 ? ? covale3 covale one ? A BB9 2 CB ? ? ? 1_555 A GLY 3 N ? ? A BB9 1 A GLY 2 1_555 ? ? ? ? ? ? ? 1.399 ? ? covale4 covale both ? A PRO 7 C ? ? ? 1_555 A BB9 8 N ? ? A PRO 6 A BB9 7 1_555 ? ? ? ? ? ? ? 1.309 ? ? covale5 covale one ? A BB9 8 CB ? ? ? 1_555 A SER 9 N ? ? A BB9 7 A SER 8 1_555 ? ? ? ? ? ? ? 1.346 ? ? covale6 covale both ? B COI 1 O2 ? ? ? 1_555 B BB9 2 C ? ? B COI 0 B BB9 1 1_555 ? ? ? ? ? ? ? 1.380 ? ? covale7 covale both ? B COI 1 C1 ? ? ? 1_555 B BB9 2 N ? ? B COI 0 B BB9 1 1_555 ? ? ? ? ? ? ? 1.315 ? ? covale8 covale one ? B BB9 2 CB ? ? ? 1_555 B GLY 3 N ? ? B BB9 1 B GLY 2 1_555 ? ? ? ? ? ? ? 1.351 ? ? covale9 covale both ? B PRO 7 C ? ? ? 1_555 B BB9 8 N ? ? B PRO 6 B BB9 7 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale10 covale one ? B BB9 8 CB ? ? ? 1_555 B SER 9 N ? ? B BB9 7 B SER 8 1_555 ? ? ? ? ? ? ? 1.361 ? ? metalc1 metalc ? ? A COI 1 O3 ? ? ? 1_555 C NA . NA ? ? A COI 0 A NA 1002 8_555 ? ? ? ? ? ? ? 2.291 ? ? metalc2 metalc ? ? A COI 1 O2 ? ? ? 1_555 C NA . NA ? ? A COI 0 A NA 1002 8_555 ? ? ? ? ? ? ? 2.667 ? ? metalc3 metalc ? ? A BB9 2 N ? ? ? 1_555 E CU . CU ? ? A BB9 1 A CU 1001 1_555 ? ? ? ? ? ? ? 2.030 ? ? metalc4 metalc ? ? A BB9 2 SG ? ? ? 1_555 E CU . CU ? ? A BB9 1 A CU 1001 1_555 ? ? ? ? ? ? ? 2.414 ? ? metalc5 metalc ? ? A BB9 2 O ? ? ? 1_555 C NA . NA ? ? A BB9 1 A NA 1002 1_555 ? ? ? ? ? ? ? 2.383 ? ? metalc6 metalc ? ? A BB9 8 N ? ? ? 1_555 E CU . CU ? ? A BB9 7 A CU 1001 1_555 ? ? ? ? ? ? ? 2.050 ? ? metalc7 metalc ? ? A BB9 8 SG ? ? ? 1_555 E CU . CU ? ? A BB9 7 A CU 1001 1_555 ? ? ? ? ? ? ? 2.336 ? ? metalc8 metalc ? ? A BB9 8 O ? ? ? 6_454 F NA . NA ? ? A BB9 7 B NA 1002 1_555 ? ? ? ? ? ? ? 2.314 ? ? metalc9 metalc ? ? A BB9 8 O ? ? ? 1_555 F NA . NA ? ? A BB9 7 B NA 1002 6_554 ? ? ? ? ? ? ? 2.314 ? ? metalc10 metalc ? ? A SER 9 O ? ? ? 1_555 D NA . NA ? ? A SER 8 A NA 1003 1_555 ? ? ? ? ? ? ? 2.409 ? ? metalc11 metalc ? ? A MET 11 O ? ? ? 1_555 D NA . NA ? ? A MET 10 A NA 1003 1_555 ? ? ? ? ? ? ? 2.273 ? ? metalc12 metalc ? ? C NA . NA ? ? ? 1_555 B CYS 10 O ? ? A NA 1002 B CYS 9 5_455 ? ? ? ? ? ? ? 2.342 ? ? metalc13 metalc ? ? C NA . NA ? ? ? 1_555 I HOH . O ? ? A NA 1002 B HOH 2005 5_455 ? ? ? ? ? ? ? 2.366 ? ? metalc14 metalc ? ? C NA . NA ? ? ? 1_555 I HOH . O ? ? A NA 1002 B HOH 2005 3_455 ? ? ? ? ? ? ? 2.366 ? ? metalc15 metalc ? ? C NA . NA ? ? ? 1_555 I HOH . O ? ? A NA 1002 B HOH 2007 5_455 ? ? ? ? ? ? ? 2.457 ? ? metalc16 metalc ? ? D NA . NA ? ? ? 1_555 H HOH . O ? ? A NA 1003 A HOH 2003 5_445 ? ? ? ? ? ? ? 2.345 ? ? metalc17 metalc ? ? D NA . NA ? ? ? 1_555 B SER 9 O ? ? A NA 1003 B SER 8 1_555 ? ? ? ? ? ? ? 2.255 ? ? metalc18 metalc ? ? D NA . NA ? ? ? 1_555 B MET 11 OXT ? ? A NA 1003 B MET 10 1_555 ? ? ? ? ? ? ? 2.297 ? ? metalc19 metalc ? ? H HOH . O ? ? ? 7_455 F NA . NA ? ? A HOH 2001 B NA 1002 1_555 ? ? ? ? ? ? ? 2.338 ? ? metalc20 metalc ? ? H HOH . O ? ? ? 6_454 F NA . NA ? ? A HOH 2004 B NA 1002 1_555 ? ? ? ? ? ? ? 2.340 ? ? metalc21 metalc ? ? B BB9 2 SG ? ? ? 1_555 G CU . CU ? ? B BB9 1 B CU 1001 1_555 ? ? ? ? ? ? ? 2.388 ? ? metalc22 metalc ? ? B BB9 2 N ? ? ? 1_555 G CU . CU ? ? B BB9 1 B CU 1001 1_555 ? ? ? ? ? ? ? 1.992 ? ? metalc23 metalc ? ? B BB9 2 O ? ? ? 1_555 F NA . NA ? ? B BB9 1 B NA 1002 4_444 ? ? ? ? ? ? ? 2.246 ? ? metalc24 metalc ? ? B BB9 2 O ? ? ? 3_455 F NA . NA ? ? B BB9 1 B NA 1002 1_555 ? ? ? ? ? ? ? 2.246 ? ? metalc25 metalc ? ? B TYR 6 O ? ? ? 1_555 F NA . NA ? ? B TYR 5 B NA 1002 1_555 ? ? ? ? ? ? ? 2.453 ? ? metalc26 metalc ? ? B BB9 8 SG ? ? ? 1_555 G CU . CU ? ? B BB9 7 B CU 1001 1_555 ? ? ? ? ? ? ? 2.372 ? ? metalc27 metalc ? ? B BB9 8 N ? ? ? 1_555 G CU . CU ? ? B BB9 7 B CU 1001 1_555 ? ? ? ? ? ? ? 2.044 ? ? metalc28 metalc ? ? F NA . NA ? ? ? 1_555 I HOH . O ? ? B NA 1002 B HOH 2004 1_555 ? ? ? ? ? ? ? 2.779 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? metalc ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O3 ? A COI 1 ? A COI 0 ? 1_555 NA ? C NA . ? A NA 1002 ? 8_555 O2 ? A COI 1 ? A COI 0 ? 1_555 65.5 ? 2 O3 ? A COI 1 ? A COI 0 ? 1_555 NA ? C NA . ? A NA 1002 ? 8_555 O ? A BB9 2 ? A BB9 1 ? 1_555 94.9 ? 3 O2 ? A COI 1 ? A COI 0 ? 1_555 NA ? C NA . ? A NA 1002 ? 8_555 O ? A BB9 2 ? A BB9 1 ? 1_555 29.6 ? 4 O3 ? A COI 1 ? A COI 0 ? 1_555 NA ? C NA . ? A NA 1002 ? 8_555 O ? B CYS 10 ? B CYS 9 ? 5_455 122.9 ? 5 O2 ? A COI 1 ? A COI 0 ? 1_555 NA ? C NA . ? A NA 1002 ? 8_555 O ? B CYS 10 ? B CYS 9 ? 5_455 63.5 ? 6 O ? A BB9 2 ? A BB9 1 ? 1_555 NA ? C NA . ? A NA 1002 ? 8_555 O ? B CYS 10 ? B CYS 9 ? 5_455 41.0 ? 7 O3 ? A COI 1 ? A COI 0 ? 1_555 NA ? C NA . ? A NA 1002 ? 8_555 O ? I HOH . ? B HOH 2005 ? 5_455 147.9 ? 8 O2 ? A COI 1 ? A COI 0 ? 1_555 NA ? C NA . ? A NA 1002 ? 8_555 O ? I HOH . ? B HOH 2005 ? 5_455 91.0 ? 9 O ? A BB9 2 ? A BB9 1 ? 1_555 NA ? C NA . ? A NA 1002 ? 8_555 O ? I HOH . ? B HOH 2005 ? 5_455 65.7 ? 10 O ? B CYS 10 ? B CYS 9 ? 5_455 NA ? C NA . ? A NA 1002 ? 8_555 O ? I HOH . ? B HOH 2005 ? 5_455 27.8 ? 11 O3 ? A COI 1 ? A COI 0 ? 1_555 NA ? C NA . ? A NA 1002 ? 8_555 O ? I HOH . ? B HOH 2005 ? 3_455 147.9 ? 12 O2 ? A COI 1 ? A COI 0 ? 1_555 NA ? C NA . ? A NA 1002 ? 8_555 O ? I HOH . ? B HOH 2005 ? 3_455 91.0 ? 13 O ? A BB9 2 ? A BB9 1 ? 1_555 NA ? C NA . ? A NA 1002 ? 8_555 O ? I HOH . ? B HOH 2005 ? 3_455 65.7 ? 14 O ? B CYS 10 ? B CYS 9 ? 5_455 NA ? C NA . ? A NA 1002 ? 8_555 O ? I HOH . ? B HOH 2005 ? 3_455 27.8 ? 15 O ? I HOH . ? B HOH 2005 ? 5_455 NA ? C NA . ? A NA 1002 ? 8_555 O ? I HOH . ? B HOH 2005 ? 3_455 0.0 ? 16 O3 ? A COI 1 ? A COI 0 ? 1_555 NA ? C NA . ? A NA 1002 ? 8_555 O ? I HOH . ? B HOH 2007 ? 5_455 155.5 ? 17 O2 ? A COI 1 ? A COI 0 ? 1_555 NA ? C NA . ? A NA 1002 ? 8_555 O ? I HOH . ? B HOH 2007 ? 5_455 90.0 ? 18 O ? A BB9 2 ? A BB9 1 ? 1_555 NA ? C NA . ? A NA 1002 ? 8_555 O ? I HOH . ? B HOH 2007 ? 5_455 60.6 ? 19 O ? B CYS 10 ? B CYS 9 ? 5_455 NA ? C NA . ? A NA 1002 ? 8_555 O ? I HOH . ? B HOH 2007 ? 5_455 38.1 ? 20 O ? I HOH . ? B HOH 2005 ? 5_455 NA ? C NA . ? A NA 1002 ? 8_555 O ? I HOH . ? B HOH 2007 ? 5_455 24.5 ? 21 O ? I HOH . ? B HOH 2005 ? 3_455 NA ? C NA . ? A NA 1002 ? 8_555 O ? I HOH . ? B HOH 2007 ? 5_455 24.5 ? 22 N ? A BB9 2 ? A BB9 1 ? 1_555 CU ? E CU . ? A CU 1001 ? 1_555 SG ? A BB9 2 ? A BB9 1 ? 1_555 85.5 ? 23 N ? A BB9 2 ? A BB9 1 ? 1_555 CU ? E CU . ? A CU 1001 ? 1_555 N ? A BB9 8 ? A BB9 7 ? 1_555 130.1 ? 24 SG ? A BB9 2 ? A BB9 1 ? 1_555 CU ? E CU . ? A CU 1001 ? 1_555 N ? A BB9 8 ? A BB9 7 ? 1_555 117.2 ? 25 N ? A BB9 2 ? A BB9 1 ? 1_555 CU ? E CU . ? A CU 1001 ? 1_555 SG ? A BB9 8 ? A BB9 7 ? 1_555 127.8 ? 26 SG ? A BB9 2 ? A BB9 1 ? 1_555 CU ? E CU . ? A CU 1001 ? 1_555 SG ? A BB9 8 ? A BB9 7 ? 1_555 108.4 ? 27 N ? A BB9 8 ? A BB9 7 ? 1_555 CU ? E CU . ? A CU 1001 ? 1_555 SG ? A BB9 8 ? A BB9 7 ? 1_555 88.7 ? 28 O ? A BB9 8 ? A BB9 7 ? 6_454 NA ? F NA . ? B NA 1002 ? 1_555 O ? A BB9 8 ? A BB9 7 ? 1_555 105.4 ? 29 O ? A BB9 8 ? A BB9 7 ? 6_454 NA ? F NA . ? B NA 1002 ? 1_555 O ? H HOH . ? A HOH 2001 ? 7_455 94.9 ? 30 O ? A BB9 8 ? A BB9 7 ? 1_555 NA ? F NA . ? B NA 1002 ? 1_555 O ? H HOH . ? A HOH 2001 ? 7_455 117.8 ? 31 O ? A BB9 8 ? A BB9 7 ? 6_454 NA ? F NA . ? B NA 1002 ? 1_555 O ? H HOH . ? A HOH 2004 ? 6_454 79.6 ? 32 O ? A BB9 8 ? A BB9 7 ? 1_555 NA ? F NA . ? B NA 1002 ? 1_555 O ? H HOH . ? A HOH 2004 ? 6_454 72.0 ? 33 O ? H HOH . ? A HOH 2001 ? 7_455 NA ? F NA . ? B NA 1002 ? 1_555 O ? H HOH . ? A HOH 2004 ? 6_454 169.9 ? 34 O ? A BB9 8 ? A BB9 7 ? 6_454 NA ? F NA . ? B NA 1002 ? 1_555 O ? B BB9 2 ? B BB9 1 ? 1_555 77.3 ? 35 O ? A BB9 8 ? A BB9 7 ? 1_555 NA ? F NA . ? B NA 1002 ? 1_555 O ? B BB9 2 ? B BB9 1 ? 1_555 43.1 ? 36 O ? H HOH . ? A HOH 2001 ? 7_455 NA ? F NA . ? B NA 1002 ? 1_555 O ? B BB9 2 ? B BB9 1 ? 1_555 88.8 ? 37 O ? H HOH . ? A HOH 2004 ? 6_454 NA ? F NA . ? B NA 1002 ? 1_555 O ? B BB9 2 ? B BB9 1 ? 1_555 98.2 ? 38 O ? A BB9 8 ? A BB9 7 ? 6_454 NA ? F NA . ? B NA 1002 ? 1_555 O ? B BB9 2 ? B BB9 1 ? 3_455 146.5 ? 39 O ? A BB9 8 ? A BB9 7 ? 1_555 NA ? F NA . ? B NA 1002 ? 1_555 O ? B BB9 2 ? B BB9 1 ? 3_455 103.1 ? 40 O ? H HOH . ? A HOH 2001 ? 7_455 NA ? F NA . ? B NA 1002 ? 1_555 O ? B BB9 2 ? B BB9 1 ? 3_455 87.1 ? 41 O ? H HOH . ? A HOH 2004 ? 6_454 NA ? F NA . ? B NA 1002 ? 1_555 O ? B BB9 2 ? B BB9 1 ? 3_455 92.8 ? 42 O ? B BB9 2 ? B BB9 1 ? 1_555 NA ? F NA . ? B NA 1002 ? 1_555 O ? B BB9 2 ? B BB9 1 ? 3_455 136.2 ? 43 O ? A BB9 8 ? A BB9 7 ? 6_454 NA ? F NA . ? B NA 1002 ? 1_555 O ? B TYR 6 ? B TYR 5 ? 1_555 129.0 ? 44 O ? A BB9 8 ? A BB9 7 ? 1_555 NA ? F NA . ? B NA 1002 ? 1_555 O ? B TYR 6 ? B TYR 5 ? 1_555 32.9 ? 45 O ? H HOH . ? A HOH 2001 ? 7_455 NA ? F NA . ? B NA 1002 ? 1_555 O ? B TYR 6 ? B TYR 5 ? 1_555 90.5 ? 46 O ? H HOH . ? A HOH 2004 ? 6_454 NA ? F NA . ? B NA 1002 ? 1_555 O ? B TYR 6 ? B TYR 5 ? 1_555 99.6 ? 47 O ? B BB9 2 ? B BB9 1 ? 1_555 NA ? F NA . ? B NA 1002 ? 1_555 O ? B TYR 6 ? B TYR 5 ? 1_555 52.2 ? 48 O ? B BB9 2 ? B BB9 1 ? 3_455 NA ? F NA . ? B NA 1002 ? 1_555 O ? B TYR 6 ? B TYR 5 ? 1_555 84.3 ? 49 O ? A BB9 8 ? A BB9 7 ? 6_454 NA ? F NA . ? B NA 1002 ? 1_555 O ? I HOH . ? B HOH 2004 ? 1_555 128.6 ? 50 O ? A BB9 8 ? A BB9 7 ? 1_555 NA ? F NA . ? B NA 1002 ? 1_555 O ? I HOH . ? B HOH 2004 ? 1_555 85.1 ? 51 O ? H HOH . ? A HOH 2001 ? 7_455 NA ? F NA . ? B NA 1002 ? 1_555 O ? I HOH . ? B HOH 2004 ? 1_555 40.4 ? 52 O ? H HOH . ? A HOH 2004 ? 6_454 NA ? F NA . ? B NA 1002 ? 1_555 O ? I HOH . ? B HOH 2004 ? 1_555 148.4 ? 53 O ? B BB9 2 ? B BB9 1 ? 1_555 NA ? F NA . ? B NA 1002 ? 1_555 O ? I HOH . ? B HOH 2004 ? 1_555 78.0 ? 54 O ? B BB9 2 ? B BB9 1 ? 3_455 NA ? F NA . ? B NA 1002 ? 1_555 O ? I HOH . ? B HOH 2004 ? 1_555 71.0 ? 55 O ? B TYR 6 ? B TYR 5 ? 1_555 NA ? F NA . ? B NA 1002 ? 1_555 O ? I HOH . ? B HOH 2004 ? 1_555 53.1 ? 56 O ? A SER 9 ? A SER 8 ? 1_555 NA ? D NA . ? A NA 1003 ? 1_555 O ? A MET 11 ? A MET 10 ? 1_555 86.4 ? 57 O ? A SER 9 ? A SER 8 ? 1_555 NA ? D NA . ? A NA 1003 ? 1_555 O ? H HOH . ? A HOH 2003 ? 5_445 136.6 ? 58 O ? A MET 11 ? A MET 10 ? 1_555 NA ? D NA . ? A NA 1003 ? 1_555 O ? H HOH . ? A HOH 2003 ? 5_445 84.9 ? 59 O ? A SER 9 ? A SER 8 ? 1_555 NA ? D NA . ? A NA 1003 ? 1_555 O ? B SER 9 ? B SER 8 ? 1_555 115.6 ? 60 O ? A MET 11 ? A MET 10 ? 1_555 NA ? D NA . ? A NA 1003 ? 1_555 O ? B SER 9 ? B SER 8 ? 1_555 98.7 ? 61 O ? H HOH . ? A HOH 2003 ? 5_445 NA ? D NA . ? A NA 1003 ? 1_555 O ? B SER 9 ? B SER 8 ? 1_555 107.8 ? 62 O ? A SER 9 ? A SER 8 ? 1_555 NA ? D NA . ? A NA 1003 ? 1_555 OXT ? B MET 11 ? B MET 10 ? 1_555 87.1 ? 63 O ? A MET 11 ? A MET 10 ? 1_555 NA ? D NA . ? A NA 1003 ? 1_555 OXT ? B MET 11 ? B MET 10 ? 1_555 163.4 ? 64 O ? H HOH . ? A HOH 2003 ? 5_445 NA ? D NA . ? A NA 1003 ? 1_555 OXT ? B MET 11 ? B MET 10 ? 1_555 89.4 ? 65 O ? B SER 9 ? B SER 8 ? 1_555 NA ? D NA . ? A NA 1003 ? 1_555 OXT ? B MET 11 ? B MET 10 ? 1_555 97.9 ? 66 SG ? B BB9 2 ? B BB9 1 ? 1_555 CU ? G CU . ? B CU 1001 ? 1_555 N ? B BB9 2 ? B BB9 1 ? 1_555 85.6 ? 67 SG ? B BB9 2 ? B BB9 1 ? 1_555 CU ? G CU . ? B CU 1001 ? 1_555 SG ? B BB9 8 ? B BB9 7 ? 1_555 111.6 ? 68 N ? B BB9 2 ? B BB9 1 ? 1_555 CU ? G CU . ? B CU 1001 ? 1_555 SG ? B BB9 8 ? B BB9 7 ? 1_555 134.6 ? 69 SG ? B BB9 2 ? B BB9 1 ? 1_555 CU ? G CU . ? B CU 1001 ? 1_555 N ? B BB9 8 ? B BB9 7 ? 1_555 117.5 ? 70 N ? B BB9 2 ? B BB9 1 ? 1_555 CU ? G CU . ? B CU 1001 ? 1_555 N ? B BB9 8 ? B BB9 7 ? 1_555 123.5 ? 71 SG ? B BB9 8 ? B BB9 7 ? 1_555 CU ? G CU . ? B CU 1001 ? 1_555 N ? B BB9 8 ? B BB9 7 ? 1_555 86.6 ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 COI A 1 ? . . . . COI A 0 ? 1_555 . . . . . . . ? 1 COI None 'Non-standard residue' 2 BB9 A 2 ? . . . . BB9 A 1 ? 1_555 . . . . . . . CYS 1 BB9 None 'Non-standard residue' 3 BB9 A 8 ? . . . . BB9 A 7 ? 1_555 . . . . . . . CYS 1 BB9 None 'Non-standard residue' 4 COI B 1 ? . . . . COI B 0 ? 1_555 . . . . . . . ? 1 COI None 'Non-standard residue' 5 BB9 B 2 ? . . . . BB9 B 1 ? 1_555 . . . . . . . CYS 1 BB9 None 'Non-standard residue' 6 BB9 B 8 ? . . . . BB9 B 7 ? 1_555 . . . . . . . CYS 1 BB9 None 'Non-standard residue' 7 CYS A 5 ? CYS A 10 ? CYS A 4 ? 1_555 CYS A 9 ? 1_555 SG SG . . . None 'Disulfide bridge' 8 CYS B 5 ? CYS B 10 ? CYS B 4 ? 1_555 CYS B 9 ? 1_555 SG SG . . . None 'Disulfide bridge' 9 COI A 1 ? BB9 A 2 ? COI A 0 ? 1_555 BB9 A 1 ? 1_555 O2 C . . . None 'Non-standard linkage' 10 BB9 A 2 ? GLY A 3 ? BB9 A 1 ? 1_555 GLY A 2 ? 1_555 CB N . . . None 'Non-standard linkage' 11 BB9 A 8 ? SER A 9 ? BB9 A 7 ? 1_555 SER A 8 ? 1_555 CB N . . . None 'Non-standard linkage' 12 COI B 1 ? BB9 B 2 ? COI B 0 ? 1_555 BB9 B 1 ? 1_555 O2 C . . . None 'Non-standard linkage' 13 BB9 B 2 ? GLY B 3 ? BB9 B 1 ? 1_555 GLY B 2 ? 1_555 CB N . . . None 'Non-standard linkage' 14 BB9 B 8 ? SER B 9 ? BB9 B 7 ? 1_555 SER B 8 ? 1_555 CB N . . . None 'Non-standard linkage' # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 TYR 6 A . ? TYR 5 A PRO 7 A ? PRO 6 A 1 -2.45 2 TYR 6 B . ? TYR 5 B PRO 7 B ? PRO 6 B 1 -13.20 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CU 1001 ? 4 'BINDING SITE FOR RESIDUE CU A 1001' AC2 Software A NA 1002 ? 7 'BINDING SITE FOR RESIDUE NA A 1002' AC3 Software A NA 1003 ? 5 'BINDING SITE FOR RESIDUE NA A 1003' AC4 Software B CU 1001 ? 4 'BINDING SITE FOR RESIDUE CU B 1001' AC5 Software B NA 1002 ? 7 'BINDING SITE FOR RESIDUE NA B 1002' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 COI A 1 ? COI A 0 . ? 1_555 ? 2 AC1 4 BB9 A 2 ? BB9 A 1 . ? 1_555 ? 3 AC1 4 PRO A 7 ? PRO A 6 . ? 1_555 ? 4 AC1 4 BB9 A 8 ? BB9 A 7 . ? 1_555 ? 5 AC2 7 COI A 1 ? COI A 0 . ? 8_555 ? 6 AC2 7 COI A 1 ? COI A 0 . ? 1_555 ? 7 AC2 7 BB9 A 2 ? BB9 A 1 . ? 1_555 ? 8 AC2 7 CYS B 10 ? CYS B 9 . ? 5_455 ? 9 AC2 7 HOH I . ? HOH B 2005 . ? 5_455 ? 10 AC2 7 HOH I . ? HOH B 2005 . ? 3_455 ? 11 AC2 7 HOH I . ? HOH B 2007 . ? 5_455 ? 12 AC3 5 SER A 9 ? SER A 8 . ? 1_555 ? 13 AC3 5 MET A 11 ? MET A 10 . ? 1_555 ? 14 AC3 5 HOH H . ? HOH A 2003 . ? 5_445 ? 15 AC3 5 SER B 9 ? SER B 8 . ? 1_555 ? 16 AC3 5 MET B 11 ? MET B 10 . ? 1_555 ? 17 AC4 4 COI B 1 ? COI B 0 . ? 1_555 ? 18 AC4 4 BB9 B 2 ? BB9 B 1 . ? 1_555 ? 19 AC4 4 PRO B 7 ? PRO B 6 . ? 1_555 ? 20 AC4 4 BB9 B 8 ? BB9 B 7 . ? 1_555 ? 21 AC5 7 BB9 A 8 ? BB9 A 7 . ? 6_454 ? 22 AC5 7 HOH H . ? HOH A 2001 . ? 7_455 ? 23 AC5 7 HOH H . ? HOH A 2004 . ? 6_454 ? 24 AC5 7 COI B 1 ? COI B 0 . ? 6_454 ? 25 AC5 7 BB9 B 2 ? BB9 B 1 . ? 3_455 ? 26 AC5 7 TYR B 6 ? TYR B 5 . ? 1_555 ? 27 AC5 7 HOH I . ? HOH B 2004 . ? 1_555 ? # _pdbx_entry_details.entry_id 2XJH _pdbx_entry_details.compound_details ;METHANOBACTIN IS A MEMBER OF THE FAMILY OF CHALKOPHORES, A COPPER CHELATING AGENT INVOLVED IN SCAVENGING, UPTAKE AND SUPPRESSION OF TOXICITY OF COPPER. GROUP: 1 NAME: METHANOBACTIN CHAIN: A, B COMPONENT_1: METHANOBACTIN PEPTIDE, RESIDUES 0 TO 10 COMPONENT_2: COPPER ATOM, RESIDUE 1001 DESCRIPTION: METHANOBACTIN IS A COPPER BINDING COMPOUND HAVING ANTIBIOTIC AND ANTIOXIDANT ACTIVITY ISOLATED FROM METHANOTROPHIC BACTERIA. METHANOBACTIN MAY FUNCTION IN COPPER UPTAKE, REGULATION OF METHANE MONOOXYGENASE EXPRESSION, PROTECTION AGAINST COPPER TOXICITY, AND PARTICULATE METHANE MONOOXYGENASE ACTIVITY. METHANOBACTIN CAN EXTRACT COPPER FROM INSOLUBLE MINERALS AND COULD BE IMPORTANT FOR MINERAL WEATHERING. MANY METHANOBACTIN PROPERTIES ARE REMINISCENT OF IRON SIDEROPHORES SUGGESTING A SIMILAR MECHANISM OF HANDLING. METHANOBACTIN-LIKE COMPOUNDS HAVE ALSO BEEN IDENTIFIED IN YEAST MITOCHONDRIA, SUGGEST THAT THESE MOLECULES ARE A MORE UNIVERSAL PHENOMENON. ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB B TYR 5 ? ? CG B TYR 5 ? ? CD2 B TYR 5 ? ? 127.61 121.00 6.61 0.60 N 2 1 CG B TYR 5 ? ? CD1 B TYR 5 ? ? CE1 B TYR 5 ? ? 127.95 121.30 6.65 0.80 N # loop_ _pdbx_validate_polymer_linkage.id _pdbx_validate_polymer_linkage.PDB_model_num _pdbx_validate_polymer_linkage.auth_atom_id_1 _pdbx_validate_polymer_linkage.auth_asym_id_1 _pdbx_validate_polymer_linkage.auth_comp_id_1 _pdbx_validate_polymer_linkage.auth_seq_id_1 _pdbx_validate_polymer_linkage.PDB_ins_code_1 _pdbx_validate_polymer_linkage.label_alt_id_1 _pdbx_validate_polymer_linkage.auth_atom_id_2 _pdbx_validate_polymer_linkage.auth_asym_id_2 _pdbx_validate_polymer_linkage.auth_comp_id_2 _pdbx_validate_polymer_linkage.auth_seq_id_2 _pdbx_validate_polymer_linkage.PDB_ins_code_2 _pdbx_validate_polymer_linkage.label_alt_id_2 _pdbx_validate_polymer_linkage.dist 1 1 C A BB9 1 ? ? N A GLY 2 ? ? 2.89 2 1 C A BB9 7 ? ? N A SER 8 ? ? 2.88 3 1 C B BB9 1 ? ? N B GLY 2 ? ? 2.89 4 1 C B BB9 7 ? ? N B SER 8 ? ? 2.92 # _pdbx_molecule_features.prd_id PRD_000762 _pdbx_molecule_features.name METHANOBACTIN _pdbx_molecule_features.type 'Chalkophore, Polypeptide' _pdbx_molecule_features.class 'Metal transport' _pdbx_molecule_features.details ? # loop_ _pdbx_molecule.instance_id _pdbx_molecule.prd_id _pdbx_molecule.asym_id 1 PRD_000762 A 2 PRD_000762 B # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A BB9 2 A BB9 1 ? CYS ? 2 A BB9 8 A BB9 7 ? CYS ? 3 B BB9 2 B BB9 1 ? CYS ? 4 B BB9 8 B BB9 7 ? CYS ? # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 2005 ? H HOH . 2 1 B HOH 2005 ? I HOH . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal BB9 N N N N 1 BB9 CA C N N 2 BB9 C C N N 3 BB9 O O N N 4 BB9 CB C N N 5 BB9 SG S N N 6 BB9 OXT O N N 7 BB9 H H N N 8 BB9 H2 H N N 9 BB9 HB H N N 10 BB9 HXT H N N 11 BB9 HG H N N 12 COI C1 C N N 13 COI O1 O N N 14 COI O2 O N N 15 COI C2 C N N 16 COI O3 O N N 17 COI C3 C N N 18 COI C4 C N N 19 COI C5 C N N 20 COI C6 C N N 21 COI HO2 H N N 22 COI H31 H N N 23 COI H32 H N N 24 COI H4 H N N 25 COI H51 H N N 26 COI H52 H N N 27 COI H53 H N N 28 COI H61 H N N 29 COI H62 H N N 30 COI H63 H N N 31 CU CU CU N N 32 CYS N N N N 33 CYS CA C N R 34 CYS C C N N 35 CYS O O N N 36 CYS CB C N N 37 CYS SG S N N 38 CYS OXT O N N 39 CYS H H N N 40 CYS H2 H N N 41 CYS HA H N N 42 CYS HB2 H N N 43 CYS HB3 H N N 44 CYS HG H N N 45 CYS HXT H N N 46 GLY N N N N 47 GLY CA C N N 48 GLY C C N N 49 GLY O O N N 50 GLY OXT O N N 51 GLY H H N N 52 GLY H2 H N N 53 GLY HA2 H N N 54 GLY HA3 H N N 55 GLY HXT H N N 56 HOH O O N N 57 HOH H1 H N N 58 HOH H2 H N N 59 MET N N N N 60 MET CA C N S 61 MET C C N N 62 MET O O N N 63 MET CB C N N 64 MET CG C N N 65 MET SD S N N 66 MET CE C N N 67 MET OXT O N N 68 MET H H N N 69 MET H2 H N N 70 MET HA H N N 71 MET HB2 H N N 72 MET HB3 H N N 73 MET HG2 H N N 74 MET HG3 H N N 75 MET HE1 H N N 76 MET HE2 H N N 77 MET HE3 H N N 78 MET HXT H N N 79 NA NA NA N N 80 PRO N N N N 81 PRO CA C N S 82 PRO C C N N 83 PRO O O N N 84 PRO CB C N N 85 PRO CG C N N 86 PRO CD C N N 87 PRO OXT O N N 88 PRO H H N N 89 PRO HA H N N 90 PRO HB2 H N N 91 PRO HB3 H N N 92 PRO HG2 H N N 93 PRO HG3 H N N 94 PRO HD2 H N N 95 PRO HD3 H N N 96 PRO HXT H N N 97 SER N N N N 98 SER CA C N S 99 SER C C N N 100 SER O O N N 101 SER CB C N N 102 SER OG O N N 103 SER OXT O N N 104 SER H H N N 105 SER H2 H N N 106 SER HA H N N 107 SER HB2 H N N 108 SER HB3 H N N 109 SER HG H N N 110 SER HXT H N N 111 TYR N N N N 112 TYR CA C N S 113 TYR C C N N 114 TYR O O N N 115 TYR CB C N N 116 TYR CG C Y N 117 TYR CD1 C Y N 118 TYR CD2 C Y N 119 TYR CE1 C Y N 120 TYR CE2 C Y N 121 TYR CZ C Y N 122 TYR OH O N N 123 TYR OXT O N N 124 TYR H H N N 125 TYR H2 H N N 126 TYR HA H N N 127 TYR HB2 H N N 128 TYR HB3 H N N 129 TYR HD1 H N N 130 TYR HD2 H N N 131 TYR HE1 H N N 132 TYR HE2 H N N 133 TYR HH H N N 134 TYR HXT H N N 135 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BB9 N CA sing N N 1 BB9 CA C sing N N 2 BB9 CA CB doub N N 3 BB9 C O doub N N 4 BB9 C OXT sing N Z 5 BB9 CB SG sing N N 6 BB9 N H sing N N 7 BB9 N H2 sing N N 8 BB9 CB HB sing N N 9 BB9 OXT HXT sing N N 10 BB9 SG HG sing N N 11 COI C1 O1 doub N N 12 COI C1 O2 sing N N 13 COI C1 C2 sing N N 14 COI O2 HO2 sing N N 15 COI C2 O3 doub N N 16 COI C2 C3 sing N N 17 COI C3 C4 sing N N 18 COI C3 H31 sing N N 19 COI C3 H32 sing N N 20 COI C4 C5 sing N N 21 COI C4 C6 sing N N 22 COI C4 H4 sing N N 23 COI C5 H51 sing N N 24 COI C5 H52 sing N N 25 COI C5 H53 sing N N 26 COI C6 H61 sing N N 27 COI C6 H62 sing N N 28 COI C6 H63 sing N N 29 CYS N CA sing N N 30 CYS N H sing N N 31 CYS N H2 sing N N 32 CYS CA C sing N N 33 CYS CA CB sing N N 34 CYS CA HA sing N N 35 CYS C O doub N N 36 CYS C OXT sing N N 37 CYS CB SG sing N N 38 CYS CB HB2 sing N N 39 CYS CB HB3 sing N N 40 CYS SG HG sing N N 41 CYS OXT HXT sing N N 42 GLY N CA sing N N 43 GLY N H sing N N 44 GLY N H2 sing N N 45 GLY CA C sing N N 46 GLY CA HA2 sing N N 47 GLY CA HA3 sing N N 48 GLY C O doub N N 49 GLY C OXT sing N N 50 GLY OXT HXT sing N N 51 HOH O H1 sing N N 52 HOH O H2 sing N N 53 MET N CA sing N N 54 MET N H sing N N 55 MET N H2 sing N N 56 MET CA C sing N N 57 MET CA CB sing N N 58 MET CA HA sing N N 59 MET C O doub N N 60 MET C OXT sing N N 61 MET CB CG sing N N 62 MET CB HB2 sing N N 63 MET CB HB3 sing N N 64 MET CG SD sing N N 65 MET CG HG2 sing N N 66 MET CG HG3 sing N N 67 MET SD CE sing N N 68 MET CE HE1 sing N N 69 MET CE HE2 sing N N 70 MET CE HE3 sing N N 71 MET OXT HXT sing N N 72 PRO N CA sing N N 73 PRO N CD sing N N 74 PRO N H sing N N 75 PRO CA C sing N N 76 PRO CA CB sing N N 77 PRO CA HA sing N N 78 PRO C O doub N N 79 PRO C OXT sing N N 80 PRO CB CG sing N N 81 PRO CB HB2 sing N N 82 PRO CB HB3 sing N N 83 PRO CG CD sing N N 84 PRO CG HG2 sing N N 85 PRO CG HG3 sing N N 86 PRO CD HD2 sing N N 87 PRO CD HD3 sing N N 88 PRO OXT HXT sing N N 89 SER N CA sing N N 90 SER N H sing N N 91 SER N H2 sing N N 92 SER CA C sing N N 93 SER CA CB sing N N 94 SER CA HA sing N N 95 SER C O doub N N 96 SER C OXT sing N N 97 SER CB OG sing N N 98 SER CB HB2 sing N N 99 SER CB HB3 sing N N 100 SER OG HG sing N N 101 SER OXT HXT sing N N 102 TYR N CA sing N N 103 TYR N H sing N N 104 TYR N H2 sing N N 105 TYR CA C sing N N 106 TYR CA CB sing N N 107 TYR CA HA sing N N 108 TYR C O doub N N 109 TYR C OXT sing N N 110 TYR CB CG sing N N 111 TYR CB HB2 sing N N 112 TYR CB HB3 sing N N 113 TYR CG CD1 doub Y N 114 TYR CG CD2 sing Y N 115 TYR CD1 CE1 sing Y N 116 TYR CD1 HD1 sing N N 117 TYR CD2 CE2 doub Y N 118 TYR CD2 HD2 sing N N 119 TYR CE1 CZ doub Y N 120 TYR CE1 HE1 sing N N 121 TYR CE2 CZ sing Y N 122 TYR CE2 HE2 sing N N 123 TYR CZ OH sing N N 124 TYR OH HH sing N N 125 TYR OXT HXT sing N N 126 # _atom_sites.entry_id 2XJH _atom_sites.fract_transf_matrix[1][1] 0.033927 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.033927 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.033921 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CU N NA O S # loop_