HEADER CELL ADHESION 06-JUL-10 2XJP TITLE X-RAY STRUCTURE OF THE N-TERMINAL DOMAIN OF THE FLOCCULIN FLO5 FROM TITLE 2 SACCHAROMYCES CEREVISIAE IN COMPLEX WITH CALCIUM AND MANNOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FLOCCULATION PROTEIN FLO5; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LECTIN-LIKE FLO5A-DOMAIN, RESIDUES 23-271; COMPND 5 SYNONYM: FLOCCULIN-5; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: S288C; SOURCE 6 ATCC: 204508; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: ORIGAMI 2 (DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_VECTOR: PET28A KEYWDS CELL ADHESION, GREENBEARD, PA14-DOMAIN, CARBOHYDRATE BINDING, SOCIAL KEYWDS 2 INTERACTION EXPDTA X-RAY DIFFRACTION AUTHOR M.VEELDERS,S.BRUECKNER,D.OTT,C.UNVERZAGT,H.-U.MOESCH,L.-O.ESSEN REVDAT 4 16-OCT-24 2XJP 1 HETSYN REVDAT 3 29-JUL-20 2XJP 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE REVDAT 2 13-APR-11 2XJP 1 JRNL REVDAT 1 15-DEC-10 2XJP 0 JRNL AUTH M.VEELDERS,S.BRUECKNER,D.OTT,C.UNVERZAGT,H.-U.MOESCH, JRNL AUTH 2 L.-O.ESSEN JRNL TITL STRUCTURAL BASIS OF FLOCCULIN-MEDIATED SOCIAL BEHAVIOR IN JRNL TITL 2 YEAST JRNL REF PROC.NATL.ACAD.SCI.USA V. 107 22511 2010 JRNL REFN ISSN 0027-8424 JRNL PMID 21149680 JRNL DOI 10.1073/PNAS.1013210108 REMARK 2 REMARK 2 RESOLUTION. 0.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 186922 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.106 REMARK 3 R VALUE (WORKING SET) : 0.105 REMARK 3 FREE R VALUE : 0.122 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.800 REMARK 3 FREE R VALUE TEST SET COUNT : 3390 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 0.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 0.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 12582 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.42 REMARK 3 BIN R VALUE (WORKING SET) : 0.2440 REMARK 3 BIN FREE R VALUE SET COUNT : 218 REMARK 3 BIN FREE R VALUE : 0.2650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1926 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 41 REMARK 3 SOLVENT ATOMS : 460 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 7.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.22000 REMARK 3 B22 (A**2) : -0.69000 REMARK 3 B33 (A**2) : 0.46000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.014 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.015 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.009 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.375 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.986 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.981 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2466 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1830 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3452 ; 2.071 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4425 ; 0.988 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 362 ; 7.849 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 97 ;35.547 ;25.361 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 361 ;12.729 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 1 ; 6.334 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 384 ; 0.134 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2922 ; 0.015 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 511 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1556 ; 3.471 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 616 ; 0.463 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2571 ; 4.904 ; 6.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 910 ; 4.350 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 842 ; 5.877 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4296 ; 2.110 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. RESIDUES 197 - 199 ARE NOT WELL DEFINED. RESIDUES 200 REMARK 3 - 204 HAVE BEEN MODELLED IN TWO DISTINCT CONFORMATIONS. REMARK 4 REMARK 4 2XJP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1290044225. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9149 REMARK 200 MONOCHROMATOR : SI (311) REMARK 200 OPTICS : CYLINDRICAL GRAZING INCIDENCE REMARK 200 MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 190329 REMARK 200 RESOLUTION RANGE HIGH (A) : 0.950 REMARK 200 RESOLUTION RANGE LOW (A) : 40.290 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.03000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 0.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.44000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: SHELX CDE REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.5 M NACL, 0.1 M BISTRIS PH7.5, 20% REMARK 280 PEG 4000 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.14000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.13000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.91000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.13000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.14000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.91000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 18 CD NE CZ NH1 NH2 REMARK 470 HIS A 21 CG ND1 CD2 CE1 NE2 REMARK 470 MET A 22 CG SD CE REMARK 470 ASP A 197 CG OD1 OD2 REMARK 470 SER A 199 OG REMARK 470 LEU A 200 CG CD1 CD2 REMARK 470 ASN A 203 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG CYS A 96 HZ3 TRP A 105 1.34 REMARK 500 NZ LYS A 194 O HOH A 2305 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HD21 ASN A 104 OH TYR A 130 4576 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 15 CA - CB - CG ANGL. DEV. = 20.2 DEGREES REMARK 500 LEU A 15 CB - CG - CD1 ANGL. DEV. = 12.4 DEGREES REMARK 500 PRO A 201 C - N - CA ANGL. DEV. = 16.8 DEGREES REMARK 500 PRO A 201 C - N - CD ANGL. DEV. = -15.3 DEGREES REMARK 500 MET A 210 CG - SD - CE ANGL. DEV. = -14.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 62 -32.45 -155.14 REMARK 500 TYR A 62 -18.98 -152.75 REMARK 500 ILE A 171 -60.43 -122.55 REMARK 500 LEU A 200 -128.78 147.38 REMARK 500 PRO A 201 82.45 -50.12 REMARK 500 SER A 227 -127.11 43.91 REMARK 500 LEU A 231 89.83 -158.34 REMARK 500 ASP A 245 -53.52 75.08 REMARK 500 ASP A 245 -75.70 74.42 REMARK 500 PHE A 247 33.00 -96.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 200 PRO A 201 -122.64 REMARK 500 PRO A 201 ASP A 202 144.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 VAL A 88 -10.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2383 DISTANCE = 7.39 ANGSTROMS REMARK 525 HOH A2398 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A2414 DISTANCE = 6.66 ANGSTROMS REMARK 525 HOH A2450 DISTANCE = 5.82 ANGSTROMS REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 D-MANNOSE(MAN): MANNOSE HAS BEEN FOUND IN BOTH ANOMERIC CONFORMATION REMARK 600 AS ACCOUNTED BY THE MICROHETEROGENEITY AMAN A1277, BBMA A1278. REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1273 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 82 OD1 REMARK 620 2 ASN A 84 OD1 100.0 REMARK 620 3 ASN A 84 OD1 100.6 7.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1272 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 160 OD2 REMARK 620 2 ASP A 161 OD1 48.9 REMARK 620 3 ASP A 161 OD2 82.0 33.6 REMARK 620 4 ASN A 224 OD1 105.3 85.3 66.4 REMARK 620 5 VAL A 226 O 170.6 139.9 107.2 80.7 REMARK 620 6 TRP A 228 O 84.3 124.3 138.2 79.7 89.8 REMARK 620 7 MAN A1277 O4 87.0 69.1 71.1 133.1 94.2 147.1 REMARK 620 8 MAN A1277 O3 83.7 116.9 138.6 155.0 88.0 78.1 69.5 REMARK 620 9 BMA A1278 O4 87.0 69.1 71.1 133.1 94.2 147.1 0.0 69.5 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1276 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 170 OG REMARK 620 2 GLU A 174 OE2 81.2 REMARK 620 3 GLU A 174 OE1 92.2 51.9 REMARK 620 4 HOH A2055 O 73.6 125.3 81.1 REMARK 620 5 HOH A2084 O 82.8 77.1 128.8 142.9 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2XJR RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF THE N-TERMINAL DOMAIN OF THE FLOCCULIN FLO5 FROM REMARK 900 SACCHAROMYCES CEREVISIAE IN COMPLEX WITH CALCIUM AND MAN5 (D2-D3) REMARK 900 RELATED ID: 2XJU RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF THE N-TERMINAL DOMAIN OF THE FLOCCULIN FLO5 FROM REMARK 900 SACCHAROMYCES CEREVISIAE WITH MUTATION S227A IN COMPLEX WITH REMARK 900 CALCIUM AND A1,2-MANNOBIOSE REMARK 900 RELATED ID: 2XJV RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF THE N-TERMINAL DOMAIN OF THE FLOCCULIN FLO5 FROM REMARK 900 SACCHAROMYCES CEREVISIAE WITH MUTATION D201T IN COMPLEX WITH REMARK 900 CALCIUM AND GLUCOSE REMARK 900 RELATED ID: 2XJT RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF THE N-TERMINAL DOMAIN OF THE FLOCCULIN FLO5 FROM REMARK 900 SACCHAROMYCES CEREVISIAE IN COMPLEX WITH CALCIUM AND MAN5 (D1) REMARK 900 RELATED ID: 2XJQ RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF THE N-TERMINAL DOMAIN OF THE FLOCCULIN FLO5 FROM REMARK 900 SACCHAROMYCES CEREVISIAE REMARK 900 RELATED ID: 2XJS RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF THE N-TERMINAL DOMAIN OF THE FLOCCULIN FLO5 FROM REMARK 900 SACCHAROMYCES CEREVISIAE IN COMPLEX WITH CALCIUM AND A1, 2- REMARK 900 MANNOBIOSE DBREF 2XJP A 23 271 UNP P38894 FLO5_YEAST 23 271 SEQADV 2XJP GLY A 14 UNP P38894 EXPRESSION TAG SEQADV 2XJP LEU A 15 UNP P38894 EXPRESSION TAG SEQADV 2XJP VAL A 16 UNP P38894 EXPRESSION TAG SEQADV 2XJP PRO A 17 UNP P38894 EXPRESSION TAG SEQADV 2XJP ARG A 18 UNP P38894 EXPRESSION TAG SEQADV 2XJP GLY A 19 UNP P38894 EXPRESSION TAG SEQADV 2XJP SER A 20 UNP P38894 EXPRESSION TAG SEQADV 2XJP HIS A 21 UNP P38894 EXPRESSION TAG SEQADV 2XJP MET A 22 UNP P38894 EXPRESSION TAG SEQRES 1 A 258 GLY LEU VAL PRO ARG GLY SER HIS MET SER GLY ALA THR SEQRES 2 A 258 GLU ALA CYS LEU PRO ALA GLY GLN ARG LYS SER GLY MET SEQRES 3 A 258 ASN ILE ASN PHE TYR GLN TYR SER LEU LYS ASP SER SER SEQRES 4 A 258 THR TYR SER ASN ALA ALA TYR MET ALA TYR GLY TYR ALA SEQRES 5 A 258 SER LYS THR LYS LEU GLY SER VAL GLY GLY GLN THR ASP SEQRES 6 A 258 ILE SER ILE ASP TYR ASN ILE PRO CYS VAL SER SER SER SEQRES 7 A 258 GLY THR PHE PRO CYS PRO GLN GLU ASP SER TYR GLY ASN SEQRES 8 A 258 TRP GLY CYS LYS GLY MET GLY ALA CYS SER ASN SER GLN SEQRES 9 A 258 GLY ILE ALA TYR TRP SER THR ASP LEU PHE GLY PHE TYR SEQRES 10 A 258 THR THR PRO THR ASN VAL THR LEU GLU MET THR GLY TYR SEQRES 11 A 258 PHE LEU PRO PRO GLN THR GLY SER TYR THR PHE SER PHE SEQRES 12 A 258 ALA THR VAL ASP ASP SER ALA ILE LEU SER VAL GLY GLY SEQRES 13 A 258 SER ILE ALA PHE GLU CYS CYS ALA GLN GLU GLN PRO PRO SEQRES 14 A 258 ILE THR SER THR ASN PHE THR ILE ASN GLY ILE LYS PRO SEQRES 15 A 258 TRP ASP GLY SER LEU PRO ASP ASN ILE THR GLY THR VAL SEQRES 16 A 258 TYR MET TYR ALA GLY TYR TYR TYR PRO LEU LYS VAL VAL SEQRES 17 A 258 TYR SER ASN ALA VAL SER TRP GLY THR LEU PRO ILE SER SEQRES 18 A 258 VAL GLU LEU PRO ASP GLY THR THR VAL SER ASP ASN PHE SEQRES 19 A 258 GLU GLY TYR VAL TYR SER PHE ASP ASP ASP LEU SER GLN SEQRES 20 A 258 SER ASN CYS THR ILE PRO ASP PRO SER ILE HIS HET CA A1272 1 HET NA A1273 1 HET CL A1274 1 HET NA A1275 1 HET CA A1276 1 HET MAN A1277 23 HET BMA A1278 23 HET BMA A1279 24 HETNAM CA CALCIUM ION HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 2 CA 2(CA 2+) FORMUL 3 NA 2(NA 1+) FORMUL 4 CL CL 1- FORMUL 7 MAN C6 H12 O6 FORMUL 8 BMA 2(C6 H12 O6) FORMUL 10 HOH *460(H2 O) HELIX 1 1 SER A 20 GLY A 24 5 5 HELIX 2 2 SER A 52 SER A 55 5 4 HELIX 3 3 ASN A 56 TYR A 62 1 7 HELIX 4 4 GLY A 63 LYS A 67 5 5 HELIX 5 5 PRO A 97 GLU A 99 5 3 SHEET 1 AA 2 ALA A 28 CYS A 29 0 SHEET 2 AA 2 THR A 264 ILE A 265 -1 O ILE A 265 N ALA A 28 SHEET 1 AB 6 LYS A 36 SER A 37 0 SHEET 2 AB 6 VAL A 251 SER A 253 -1 O SER A 253 N LYS A 36 SHEET 3 AB 6 VAL A 136 PHE A 144 1 O TYR A 143 N TYR A 252 SHEET 4 AB 6 TYR A 216 ASN A 224 -1 O TYR A 216 N PHE A 144 SHEET 5 AB 6 SER A 162 VAL A 167 -1 O SER A 162 N SER A 223 SHEET 6 AB 6 ILE A 190 GLY A 192 -1 O ILE A 190 N LEU A 165 SHEET 1 AC 5 LYS A 36 SER A 37 0 SHEET 2 AC 5 VAL A 251 SER A 253 -1 O SER A 253 N LYS A 36 SHEET 3 AC 5 VAL A 136 PHE A 144 1 O TYR A 143 N TYR A 252 SHEET 4 AC 5 MET A 39 GLN A 45 -1 O ASN A 40 N THR A 141 SHEET 5 AC 5 LYS A 69 GLN A 76 -1 N LEU A 70 O PHE A 43 SHEET 1 AD 2 ILE A 81 TYR A 83 0 SHEET 2 AD 2 GLY A 229 LEU A 231 -1 O GLY A 229 N TYR A 83 SHEET 1 AE 2 PRO A 86 SER A 89 0 SHEET 2 AE 2 GLY A 92 PRO A 95 -1 O GLY A 92 N SER A 89 SHEET 1 AF 3 SER A 101 TYR A 102 0 SHEET 2 AF 3 GLY A 106 CYS A 107 -1 O GLY A 106 N TYR A 102 SHEET 3 AF 3 GLY A 111 ALA A 112 -1 O GLY A 111 N CYS A 107 SHEET 1 AG 4 THR A 205 MET A 210 0 SHEET 2 AG 4 GLY A 150 PHE A 156 -1 O GLY A 150 N MET A 210 SHEET 3 AG 4 ILE A 233 GLU A 236 -1 O SER A 234 N SER A 155 SHEET 4 AG 4 THR A 242 SER A 244 -1 O VAL A 243 N VAL A 235 SSBOND 1 CYS A 29 CYS A 175 1555 1555 2.04 SSBOND 2 CYS A 87 CYS A 113 1555 1555 2.05 SSBOND 3 CYS A 96 CYS A 107 1555 1555 2.05 SSBOND 4 CYS A 176 CYS A 263 1555 1555 2.04 LINK OD1 ASP A 82 NA NA A1273 1555 1555 2.26 LINK OD1AASN A 84 NA NA A1273 1555 1555 2.48 LINK OD1BASN A 84 NA NA A1273 1555 1555 2.42 LINK OD2 ASP A 160 CA CA A1272 1555 1555 2.32 LINK OD1BASP A 161 CA CA A1272 1555 1555 2.40 LINK OD2AASP A 161 CA CA A1272 1555 1555 2.56 LINK OG SER A 170 CA CA A1276 1555 1555 2.41 LINK OE2 GLU A 174 CA CA A1276 1555 1555 2.52 LINK OE1 GLU A 174 CA CA A1276 1555 1555 2.48 LINK OD1 ASN A 224 CA CA A1272 1555 1555 2.35 LINK O VAL A 226 CA CA A1272 1555 1555 2.36 LINK O TRP A 228 CA CA A1272 1555 1555 2.32 LINK CA CA A1272 O4 AMAN A1277 1555 1555 2.42 LINK CA CA A1272 O3 AMAN A1277 1555 1555 2.45 LINK CA CA A1272 O4 BBMA A1278 1555 1555 2.42 LINK CA CA A1272 O3 BBMA A1278 1555 1555 2.45 LINK CA CA A1276 O HOH A2055 1555 1555 2.42 LINK CA CA A1276 O HOH A2084 1555 1555 2.39 CISPEP 1 ASN A 104 TRP A 105 0 -10.45 CISPEP 2 ASN A 104 TRP A 105 0 0.45 CISPEP 3 ASP A 160 ASP A 161 0 13.86 CISPEP 4 ASP A 160 ASP A 161 0 13.97 CRYST1 46.280 61.820 106.260 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021608 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016176 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009411 0.00000