data_2XKH # _entry.id 2XKH # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2XKH pdb_00002xkh 10.2210/pdb2xkh/pdb PDBE EBI-44557 ? ? WWPDB D_1290044557 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 2VYZ unspecified 'MUTANT ALA55PHE OF CEREBRATULUS LACTEUS MINI- HEMOGLOBIN' PDB 1V07 unspecified 'CRYSTAL STRUCTURE OF THRE11VAL MUTANT OF THE NERVE TISSUE MINI-HEMOGLOBIN FROM THE NEMERTEAN WORM CEREBRATULUS LACTEUS' PDB 2VYY unspecified 'MUTANT ALA55TRP OF CEREBRATULS LACTEUS MINI- HEMOGLOBIN' PDB 1KR7 unspecified 'CRYSTAL STRUCTURE OF THE NERVE TISSUE MINI- HEMOGLOBIN FROMTHE NEMERTEAN WORM CEREBRATULUS LACTEUS' PDB 2XKG unspecified 'C.LACTEUS MINI-HB LEU86ALA MUTANT' PDB 2XKI unspecified 'AQUO-MET STRUCTURE OF C.LACTEUS MINI-HB' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2XKH _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2010-07-08 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Pesce, A.' 1 'Nardini, M.' 2 'Dewilde, S.' 3 'Capece, L.' 4 'Marti, M.A.' 5 'Congia, S.' 6 'Salter, M.D.' 7 'Blouin, G.C.' 8 'Estrin, D.A.' 9 'Ascenzi, P.' 10 'Moens, L.' 11 'Bolognesi, M.' 12 'Olson, J.S.' 13 # _citation.id primary _citation.title 'Ligand Migration in the Apolar Tunnel of Cerebratulus Lacteus Mini-Hemoglobin.' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 286 _citation.page_first 5347 _citation.page_last ? _citation.year 2011 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21147768 _citation.pdbx_database_id_DOI 10.1074/JBC.M110.169045 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Pesce, A.' 1 ? primary 'Nardini, M.' 2 ? primary 'Dewilde, S.' 3 ? primary 'Capece, L.' 4 ? primary 'Marti, M.A.' 5 ? primary 'Congia, S.' 6 ? primary 'Salter, M.D.' 7 ? primary 'Blouin, G.C.' 8 ? primary 'Estrin, D.A.' 9 ? primary 'Ascenzi, P.' 10 ? primary 'Moens, L.' 11 ? primary 'Bolognesi, M.' 12 ? primary 'Olson, J.S.' 13 ? # _cell.entry_id 2XKH _cell.length_a 42.919 _cell.length_b 43.011 _cell.length_c 59.472 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XKH _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'NEURAL HEMOGLOBIN' 11504.869 1 ? YES ? ? 2 non-polymer syn 'PROTOPORPHYRIN IX CONTAINING FE' 616.487 1 ? ? ? ? 3 non-polymer syn 'OXYGEN MOLECULE' 31.999 1 ? ? ? ? 4 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 5 non-polymer syn XENON 131.293 2 ? ? ? ? 6 water nat water 18.015 61 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'MINI-HEMOGLOBIN, NRHB' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MVNWAAVVDDFYQELFKAHPEYQNKFGFKGVALGSLKGNAAYKTQAGKTVDYINAAIGGSADAAGLASRHKGRNVGSAEF HNAKACAAKACSAHGAPDLGHAIDDILSHL ; _entity_poly.pdbx_seq_one_letter_code_can ;MVNWAAVVDDFYQELFKAHPEYQNKFGFKGVALGSLKGNAAYKTQAGKTVDYINAAIGGSADAAGLASRHKGRNVGSAEF HNAKACAAKACSAHGAPDLGHAIDDILSHL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 VAL n 1 3 ASN n 1 4 TRP n 1 5 ALA n 1 6 ALA n 1 7 VAL n 1 8 VAL n 1 9 ASP n 1 10 ASP n 1 11 PHE n 1 12 TYR n 1 13 GLN n 1 14 GLU n 1 15 LEU n 1 16 PHE n 1 17 LYS n 1 18 ALA n 1 19 HIS n 1 20 PRO n 1 21 GLU n 1 22 TYR n 1 23 GLN n 1 24 ASN n 1 25 LYS n 1 26 PHE n 1 27 GLY n 1 28 PHE n 1 29 LYS n 1 30 GLY n 1 31 VAL n 1 32 ALA n 1 33 LEU n 1 34 GLY n 1 35 SER n 1 36 LEU n 1 37 LYS n 1 38 GLY n 1 39 ASN n 1 40 ALA n 1 41 ALA n 1 42 TYR n 1 43 LYS n 1 44 THR n 1 45 GLN n 1 46 ALA n 1 47 GLY n 1 48 LYS n 1 49 THR n 1 50 VAL n 1 51 ASP n 1 52 TYR n 1 53 ILE n 1 54 ASN n 1 55 ALA n 1 56 ALA n 1 57 ILE n 1 58 GLY n 1 59 GLY n 1 60 SER n 1 61 ALA n 1 62 ASP n 1 63 ALA n 1 64 ALA n 1 65 GLY n 1 66 LEU n 1 67 ALA n 1 68 SER n 1 69 ARG n 1 70 HIS n 1 71 LYS n 1 72 GLY n 1 73 ARG n 1 74 ASN n 1 75 VAL n 1 76 GLY n 1 77 SER n 1 78 ALA n 1 79 GLU n 1 80 PHE n 1 81 HIS n 1 82 ASN n 1 83 ALA n 1 84 LYS n 1 85 ALA n 1 86 CYS n 1 87 ALA n 1 88 ALA n 1 89 LYS n 1 90 ALA n 1 91 CYS n 1 92 SER n 1 93 ALA n 1 94 HIS n 1 95 GLY n 1 96 ALA n 1 97 PRO n 1 98 ASP n 1 99 LEU n 1 100 GLY n 1 101 HIS n 1 102 ALA n 1 103 ILE n 1 104 ASP n 1 105 ASP n 1 106 ILE n 1 107 LEU n 1 108 SER n 1 109 HIS n 1 110 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'MILKY RIBBON-WORM' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue 'NERVE TISSUE' _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'CEREBRATULUS LACTEUS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 6221 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code GLBN_CERLA _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession O76242 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2XKH _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 110 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O76242 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 110 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 0 _struct_ref_seq.pdbx_auth_seq_align_end 109 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 2XKH _struct_ref_seq_dif.mon_id ALA _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 87 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code ? _struct_ref_seq_dif.db_mon_id LEU _struct_ref_seq_dif.pdbx_seq_db_seq_num 87 _struct_ref_seq_dif.details 'engineered mutation' _struct_ref_seq_dif.pdbx_auth_seq_num 86 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HEM non-polymer . 'PROTOPORPHYRIN IX CONTAINING FE' HEME 'C34 H32 Fe N4 O4' 616.487 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 OXY non-polymer . 'OXYGEN MOLECULE' ? O2 31.999 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 XE non-polymer . XENON ? Xe 131.293 # _exptl.entry_id 2XKH _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.5 _exptl_crystal.density_percent_sol 51 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '60% AMMONIUM SULPHATE, 50MM SODIUM ACETATE PH 6.0, AT 4C' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RUH3R' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2XKH _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 35.00 _reflns.d_resolution_high 2.30 _reflns.number_obs 5031 _reflns.number_all ? _reflns.percent_possible_obs 97.5 _reflns.pdbx_Rmerge_I_obs 0.09 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 8.60 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.5 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.30 _reflns_shell.d_res_low 2.34 _reflns_shell.percent_possible_all 93.0 _reflns_shell.Rmerge_I_obs 0.40 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2XKH _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 4518 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 18.29 _refine.ls_d_res_high 2.31 _refine.ls_percent_reflns_obs 100.00 _refine.ls_R_factor_obs 0.20102 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.19381 _refine.ls_R_factor_R_free 0.26610 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.1 _refine.ls_number_reflns_R_free 509 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.934 _refine.correlation_coeff_Fo_to_Fc_free 0.869 _refine.B_iso_mean 16.631 _refine.aniso_B[1][1] 0.19 _refine.aniso_B[2][2] -0.10 _refine.aniso_B[3][3] -0.09 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model 'PDB ENTRY 1KR7' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.503 _refine.pdbx_overall_ESU_R_Free 0.290 _refine.overall_SU_ML 0.202 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 8.313 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 811 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 52 _refine_hist.number_atoms_solvent 61 _refine_hist.number_atoms_total 924 _refine_hist.d_res_high 2.31 _refine_hist.d_res_low 18.29 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.010 0.021 ? 891 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.073 2.074 ? 1218 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.423 5.000 ? 111 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 35.832 24.737 ? 38 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 17.767 15.000 ? 126 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 21.884 15.000 ? 2 'X-RAY DIFFRACTION' ? r_chiral_restr 0.076 0.200 ? 118 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.009 0.020 ? 699 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.629 1.500 ? 543 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.172 2.000 ? 845 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 2.401 3.000 ? 348 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 3.487 4.500 ? 372 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.315 _refine_ls_shell.d_res_low 2.374 _refine_ls_shell.number_reflns_R_work 299 _refine_ls_shell.R_factor_R_work 0.270 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.357 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 44 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2XKH _struct.title 'Xe derivative of C.lacteus mini-Hb Leu86Ala mutant' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2XKH _struct_keywords.pdbx_keywords 'OXYGEN STORAGE' _struct_keywords.text 'OXYGEN STORAGE, OXYGEN TRANSPORT, XE DERIVATIVE, METAL-BINDING' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 6 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 3 ? HIS A 19 ? ASN A 2 HIS A 18 1 ? 17 HELX_P HELX_P2 2 PRO A 20 ? PHE A 26 ? PRO A 19 PHE A 25 5 ? 7 HELX_P HELX_P3 3 ALA A 32 ? GLY A 38 ? ALA A 31 GLY A 37 5 ? 7 HELX_P HELX_P4 4 ASN A 39 ? GLY A 59 ? ASN A 38 GLY A 58 1 ? 21 HELX_P HELX_P5 5 ASP A 62 ? GLY A 72 ? ASP A 61 GLY A 71 1 ? 11 HELX_P HELX_P6 6 GLY A 76 ? HIS A 94 ? GLY A 75 HIS A 93 1 ? 19 HELX_P HELX_P7 7 LEU A 99 ? SER A 108 ? LEU A 98 SER A 107 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A HIS 70 NE2 ? ? ? 1_555 B HEM . FE ? ? A HIS 69 A HEM 1110 1_555 ? ? ? ? ? ? ? 2.126 ? ? metalc2 metalc ? ? B HEM . FE ? ? ? 1_555 C OXY . O2 ? ? A HEM 1110 A OXY 1111 1_555 ? ? ? ? ? ? ? 2.494 ? ? metalc3 metalc ? ? B HEM . FE ? ? ? 1_555 C OXY . O1 ? ? A HEM 1110 A OXY 1111 1_555 ? ? ? ? ? ? ? 1.895 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A HEM 1110 ? 18 'BINDING SITE FOR RESIDUE HEM A 1110' AC2 Software A OXY 1111 ? 4 'BINDING SITE FOR RESIDUE OXY A 1111' AC3 Software A SO4 1112 ? 8 'BINDING SITE FOR RESIDUE SO4 A 1112' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 18 LYS A 25 ? LYS A 24 . ? 1_555 ? 2 AC1 18 PHE A 26 ? PHE A 25 . ? 1_555 ? 3 AC1 18 GLN A 45 ? GLN A 44 . ? 1_555 ? 4 AC1 18 LYS A 48 ? LYS A 47 . ? 1_555 ? 5 AC1 18 LEU A 66 ? LEU A 65 . ? 1_555 ? 6 AC1 18 ARG A 69 ? ARG A 68 . ? 1_555 ? 7 AC1 18 HIS A 70 ? HIS A 69 . ? 1_555 ? 8 AC1 18 ARG A 73 ? ARG A 72 . ? 1_555 ? 9 AC1 18 VAL A 75 ? VAL A 74 . ? 1_555 ? 10 AC1 18 PHE A 80 ? PHE A 79 . ? 1_555 ? 11 AC1 18 OXY C . ? OXY A 1111 . ? 1_555 ? 12 AC1 18 HOH G . ? HOH A 2012 . ? 1_555 ? 13 AC1 18 HOH G . ? HOH A 2054 . ? 1_555 ? 14 AC1 18 HOH G . ? HOH A 2055 . ? 1_555 ? 15 AC1 18 HOH G . ? HOH A 2056 . ? 1_555 ? 16 AC1 18 HOH G . ? HOH A 2057 . ? 1_555 ? 17 AC1 18 HOH G . ? HOH A 2058 . ? 1_555 ? 18 AC1 18 HOH G . ? HOH A 2059 . ? 1_555 ? 19 AC2 4 TYR A 12 ? TYR A 11 . ? 1_555 ? 20 AC2 4 PHE A 26 ? PHE A 25 . ? 1_555 ? 21 AC2 4 GLN A 45 ? GLN A 44 . ? 1_555 ? 22 AC2 4 HEM B . ? HEM A 1110 . ? 1_555 ? 23 AC3 8 MET A 1 ? MET A 0 . ? 3_645 ? 24 AC3 8 VAL A 2 ? VAL A 1 . ? 3_645 ? 25 AC3 8 TRP A 4 ? TRP A 3 . ? 3_645 ? 26 AC3 8 ARG A 69 ? ARG A 68 . ? 1_555 ? 27 AC3 8 HOH G . ? HOH A 2030 . ? 1_555 ? 28 AC3 8 HOH G . ? HOH A 2058 . ? 1_555 ? 29 AC3 8 HOH G . ? HOH A 2059 . ? 1_555 ? 30 AC3 8 HOH G . ? HOH A 2060 . ? 1_555 ? # _database_PDB_matrix.entry_id 2XKH _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2XKH _atom_sites.fract_transf_matrix[1][1] 0.023300 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023250 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016815 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C FE N O S XE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 0 0 MET MET A . n A 1 2 VAL 2 1 1 VAL VAL A . n A 1 3 ASN 3 2 2 ASN ASN A . n A 1 4 TRP 4 3 3 TRP TRP A . n A 1 5 ALA 5 4 4 ALA ALA A . n A 1 6 ALA 6 5 5 ALA ALA A . n A 1 7 VAL 7 6 6 VAL VAL A . n A 1 8 VAL 8 7 7 VAL VAL A . n A 1 9 ASP 9 8 8 ASP ASP A . n A 1 10 ASP 10 9 9 ASP ASP A . n A 1 11 PHE 11 10 10 PHE PHE A . n A 1 12 TYR 12 11 11 TYR TYR A . n A 1 13 GLN 13 12 12 GLN GLN A . n A 1 14 GLU 14 13 13 GLU GLU A . n A 1 15 LEU 15 14 14 LEU LEU A . n A 1 16 PHE 16 15 15 PHE PHE A . n A 1 17 LYS 17 16 16 LYS LYS A . n A 1 18 ALA 18 17 17 ALA ALA A . n A 1 19 HIS 19 18 18 HIS HIS A . n A 1 20 PRO 20 19 19 PRO PRO A . n A 1 21 GLU 21 20 20 GLU GLU A . n A 1 22 TYR 22 21 21 TYR TYR A . n A 1 23 GLN 23 22 22 GLN GLN A . n A 1 24 ASN 24 23 23 ASN ASN A . n A 1 25 LYS 25 24 24 LYS LYS A . n A 1 26 PHE 26 25 25 PHE PHE A . n A 1 27 GLY 27 26 26 GLY GLY A . n A 1 28 PHE 28 27 27 PHE PHE A . n A 1 29 LYS 29 28 28 LYS LYS A . n A 1 30 GLY 30 29 29 GLY GLY A . n A 1 31 VAL 31 30 30 VAL VAL A . n A 1 32 ALA 32 31 31 ALA ALA A . n A 1 33 LEU 33 32 32 LEU LEU A . n A 1 34 GLY 34 33 33 GLY GLY A . n A 1 35 SER 35 34 34 SER SER A . n A 1 36 LEU 36 35 35 LEU LEU A . n A 1 37 LYS 37 36 36 LYS LYS A . n A 1 38 GLY 38 37 37 GLY GLY A . n A 1 39 ASN 39 38 38 ASN ASN A . n A 1 40 ALA 40 39 39 ALA ALA A . n A 1 41 ALA 41 40 40 ALA ALA A . n A 1 42 TYR 42 41 41 TYR TYR A . n A 1 43 LYS 43 42 42 LYS LYS A . n A 1 44 THR 44 43 43 THR THR A . n A 1 45 GLN 45 44 44 GLN GLN A . n A 1 46 ALA 46 45 45 ALA ALA A . n A 1 47 GLY 47 46 46 GLY GLY A . n A 1 48 LYS 48 47 47 LYS LYS A . n A 1 49 THR 49 48 48 THR THR A . n A 1 50 VAL 50 49 49 VAL VAL A . n A 1 51 ASP 51 50 50 ASP ASP A . n A 1 52 TYR 52 51 51 TYR TYR A . n A 1 53 ILE 53 52 52 ILE ILE A . n A 1 54 ASN 54 53 53 ASN ASN A . n A 1 55 ALA 55 54 54 ALA ALA A . n A 1 56 ALA 56 55 55 ALA ALA A . n A 1 57 ILE 57 56 56 ILE ILE A . n A 1 58 GLY 58 57 57 GLY GLY A . n A 1 59 GLY 59 58 58 GLY GLY A . n A 1 60 SER 60 59 59 SER SER A . n A 1 61 ALA 61 60 60 ALA ALA A . n A 1 62 ASP 62 61 61 ASP ASP A . n A 1 63 ALA 63 62 62 ALA ALA A . n A 1 64 ALA 64 63 63 ALA ALA A . n A 1 65 GLY 65 64 64 GLY GLY A . n A 1 66 LEU 66 65 65 LEU LEU A . n A 1 67 ALA 67 66 66 ALA ALA A . n A 1 68 SER 68 67 67 SER SER A . n A 1 69 ARG 69 68 68 ARG ARG A . n A 1 70 HIS 70 69 69 HIS HIS A . n A 1 71 LYS 71 70 70 LYS LYS A . n A 1 72 GLY 72 71 71 GLY GLY A . n A 1 73 ARG 73 72 72 ARG ARG A . n A 1 74 ASN 74 73 73 ASN ASN A . n A 1 75 VAL 75 74 74 VAL VAL A . n A 1 76 GLY 76 75 75 GLY GLY A . n A 1 77 SER 77 76 76 SER SER A . n A 1 78 ALA 78 77 77 ALA ALA A . n A 1 79 GLU 79 78 78 GLU GLU A . n A 1 80 PHE 80 79 79 PHE PHE A . n A 1 81 HIS 81 80 80 HIS HIS A . n A 1 82 ASN 82 81 81 ASN ASN A . n A 1 83 ALA 83 82 82 ALA ALA A . n A 1 84 LYS 84 83 83 LYS LYS A . n A 1 85 ALA 85 84 84 ALA ALA A . n A 1 86 CYS 86 85 85 CYS CYS A . n A 1 87 ALA 87 86 86 ALA ALA A . n A 1 88 ALA 88 87 87 ALA ALA A . n A 1 89 LYS 89 88 88 LYS LYS A . n A 1 90 ALA 90 89 89 ALA ALA A . n A 1 91 CYS 91 90 90 CYS CYS A . n A 1 92 SER 92 91 91 SER SER A . n A 1 93 ALA 93 92 92 ALA ALA A . n A 1 94 HIS 94 93 93 HIS HIS A . n A 1 95 GLY 95 94 94 GLY GLY A . n A 1 96 ALA 96 95 95 ALA ALA A . n A 1 97 PRO 97 96 96 PRO PRO A . n A 1 98 ASP 98 97 97 ASP ASP A . n A 1 99 LEU 99 98 98 LEU LEU A . n A 1 100 GLY 100 99 99 GLY GLY A . n A 1 101 HIS 101 100 100 HIS HIS A . n A 1 102 ALA 102 101 101 ALA ALA A . n A 1 103 ILE 103 102 102 ILE ILE A . n A 1 104 ASP 104 103 103 ASP ASP A . n A 1 105 ASP 105 104 104 ASP ASP A . n A 1 106 ILE 106 105 105 ILE ILE A . n A 1 107 LEU 107 106 106 LEU LEU A . n A 1 108 SER 108 107 107 SER SER A . n A 1 109 HIS 109 108 108 HIS HIS A . n A 1 110 LEU 110 109 109 LEU LEU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM 1 1110 1110 HEM HEM A . C 3 OXY 1 1111 1111 OXY OXY A . D 4 SO4 1 1112 1112 SO4 SO4 A . E 5 XE 1 1113 1113 XE XE A . F 5 XE 1 1114 1114 XE XE A . G 6 HOH 1 2001 2001 HOH HOH A . G 6 HOH 2 2002 2002 HOH HOH A . G 6 HOH 3 2003 2003 HOH HOH A . G 6 HOH 4 2004 2004 HOH HOH A . G 6 HOH 5 2005 2005 HOH HOH A . G 6 HOH 6 2006 2006 HOH HOH A . G 6 HOH 7 2007 2007 HOH HOH A . G 6 HOH 8 2008 2008 HOH HOH A . G 6 HOH 9 2009 2009 HOH HOH A . G 6 HOH 10 2010 2010 HOH HOH A . G 6 HOH 11 2011 2011 HOH HOH A . G 6 HOH 12 2012 2012 HOH HOH A . G 6 HOH 13 2013 2013 HOH HOH A . G 6 HOH 14 2014 2014 HOH HOH A . G 6 HOH 15 2015 2015 HOH HOH A . G 6 HOH 16 2016 2016 HOH HOH A . G 6 HOH 17 2017 2017 HOH HOH A . G 6 HOH 18 2018 2018 HOH HOH A . G 6 HOH 19 2019 2019 HOH HOH A . G 6 HOH 20 2020 2020 HOH HOH A . G 6 HOH 21 2021 2021 HOH HOH A . G 6 HOH 22 2022 2022 HOH HOH A . G 6 HOH 23 2023 2023 HOH HOH A . G 6 HOH 24 2024 2024 HOH HOH A . G 6 HOH 25 2025 2025 HOH HOH A . G 6 HOH 26 2026 2026 HOH HOH A . G 6 HOH 27 2027 2027 HOH HOH A . G 6 HOH 28 2028 2028 HOH HOH A . G 6 HOH 29 2029 2029 HOH HOH A . G 6 HOH 30 2030 2030 HOH HOH A . G 6 HOH 31 2031 2031 HOH HOH A . G 6 HOH 32 2032 2032 HOH HOH A . G 6 HOH 33 2033 2033 HOH HOH A . G 6 HOH 34 2034 2034 HOH HOH A . G 6 HOH 35 2035 2035 HOH HOH A . G 6 HOH 36 2036 2036 HOH HOH A . G 6 HOH 37 2037 2037 HOH HOH A . G 6 HOH 38 2038 2038 HOH HOH A . G 6 HOH 39 2039 2039 HOH HOH A . G 6 HOH 40 2040 2040 HOH HOH A . G 6 HOH 41 2041 2041 HOH HOH A . G 6 HOH 42 2042 2042 HOH HOH A . G 6 HOH 43 2043 2043 HOH HOH A . G 6 HOH 44 2044 2044 HOH HOH A . G 6 HOH 45 2045 2045 HOH HOH A . G 6 HOH 46 2046 2046 HOH HOH A . G 6 HOH 47 2047 2047 HOH HOH A . G 6 HOH 48 2048 2048 HOH HOH A . G 6 HOH 49 2049 2049 HOH HOH A . G 6 HOH 50 2050 2050 HOH HOH A . G 6 HOH 51 2051 2051 HOH HOH A . G 6 HOH 52 2052 2052 HOH HOH A . G 6 HOH 53 2053 2053 HOH HOH A . G 6 HOH 54 2054 2054 HOH HOH A . G 6 HOH 55 2055 2055 HOH HOH A . G 6 HOH 56 2056 2056 HOH HOH A . G 6 HOH 57 2057 2057 HOH HOH A . G 6 HOH 58 2058 2058 HOH HOH A . G 6 HOH 59 2059 2059 HOH HOH A . G 6 HOH 60 2060 2060 HOH HOH A . G 6 HOH 61 2061 2061 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NE2 ? A HIS 70 ? A HIS 69 ? 1_555 FE ? B HEM . ? A HEM 1110 ? 1_555 NA ? B HEM . ? A HEM 1110 ? 1_555 90.3 ? 2 NE2 ? A HIS 70 ? A HIS 69 ? 1_555 FE ? B HEM . ? A HEM 1110 ? 1_555 NB ? B HEM . ? A HEM 1110 ? 1_555 101.8 ? 3 NA ? B HEM . ? A HEM 1110 ? 1_555 FE ? B HEM . ? A HEM 1110 ? 1_555 NB ? B HEM . ? A HEM 1110 ? 1_555 87.5 ? 4 NE2 ? A HIS 70 ? A HIS 69 ? 1_555 FE ? B HEM . ? A HEM 1110 ? 1_555 NC ? B HEM . ? A HEM 1110 ? 1_555 93.0 ? 5 NA ? B HEM . ? A HEM 1110 ? 1_555 FE ? B HEM . ? A HEM 1110 ? 1_555 NC ? B HEM . ? A HEM 1110 ? 1_555 174.4 ? 6 NB ? B HEM . ? A HEM 1110 ? 1_555 FE ? B HEM . ? A HEM 1110 ? 1_555 NC ? B HEM . ? A HEM 1110 ? 1_555 96.2 ? 7 NE2 ? A HIS 70 ? A HIS 69 ? 1_555 FE ? B HEM . ? A HEM 1110 ? 1_555 ND ? B HEM . ? A HEM 1110 ? 1_555 81.2 ? 8 NA ? B HEM . ? A HEM 1110 ? 1_555 FE ? B HEM . ? A HEM 1110 ? 1_555 ND ? B HEM . ? A HEM 1110 ? 1_555 83.1 ? 9 NB ? B HEM . ? A HEM 1110 ? 1_555 FE ? B HEM . ? A HEM 1110 ? 1_555 ND ? B HEM . ? A HEM 1110 ? 1_555 170.1 ? 10 NC ? B HEM . ? A HEM 1110 ? 1_555 FE ? B HEM . ? A HEM 1110 ? 1_555 ND ? B HEM . ? A HEM 1110 ? 1_555 93.0 ? 11 NE2 ? A HIS 70 ? A HIS 69 ? 1_555 FE ? B HEM . ? A HEM 1110 ? 1_555 O2 ? C OXY . ? A OXY 1111 ? 1_555 168.2 ? 12 NA ? B HEM . ? A HEM 1110 ? 1_555 FE ? B HEM . ? A HEM 1110 ? 1_555 O2 ? C OXY . ? A OXY 1111 ? 1_555 77.9 ? 13 NB ? B HEM . ? A HEM 1110 ? 1_555 FE ? B HEM . ? A HEM 1110 ? 1_555 O2 ? C OXY . ? A OXY 1111 ? 1_555 79.0 ? 14 NC ? B HEM . ? A HEM 1110 ? 1_555 FE ? B HEM . ? A HEM 1110 ? 1_555 O2 ? C OXY . ? A OXY 1111 ? 1_555 98.6 ? 15 ND ? B HEM . ? A HEM 1110 ? 1_555 FE ? B HEM . ? A HEM 1110 ? 1_555 O2 ? C OXY . ? A OXY 1111 ? 1_555 96.2 ? 16 NE2 ? A HIS 70 ? A HIS 69 ? 1_555 FE ? B HEM . ? A HEM 1110 ? 1_555 O1 ? C OXY . ? A OXY 1111 ? 1_555 152.0 ? 17 NA ? B HEM . ? A HEM 1110 ? 1_555 FE ? B HEM . ? A HEM 1110 ? 1_555 O1 ? C OXY . ? A OXY 1111 ? 1_555 86.5 ? 18 NB ? B HEM . ? A HEM 1110 ? 1_555 FE ? B HEM . ? A HEM 1110 ? 1_555 O1 ? C OXY . ? A OXY 1111 ? 1_555 105.9 ? 19 NC ? B HEM . ? A HEM 1110 ? 1_555 FE ? B HEM . ? A HEM 1110 ? 1_555 O1 ? C OXY . ? A OXY 1111 ? 1_555 88.4 ? 20 ND ? B HEM . ? A HEM 1110 ? 1_555 FE ? B HEM . ? A HEM 1110 ? 1_555 O1 ? C OXY . ? A OXY 1111 ? 1_555 70.8 ? 21 O2 ? C OXY . ? A OXY 1111 ? 1_555 FE ? B HEM . ? A HEM 1110 ? 1_555 O1 ? C OXY . ? A OXY 1111 ? 1_555 27.9 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-12-08 2 'Structure model' 1 1 2011-07-07 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2019-05-15 5 'Structure model' 1 4 2023-12-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Experimental preparation' 5 4 'Structure model' Other 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Database references' 8 5 'Structure model' 'Derived calculations' 9 5 'Structure model' Other 10 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' exptl_crystal_grow 2 4 'Structure model' pdbx_database_proc 3 4 'Structure model' pdbx_database_status 4 5 'Structure model' chem_comp_atom 5 5 'Structure model' chem_comp_bond 6 5 'Structure model' database_2 7 5 'Structure model' pdbx_database_status 8 5 'Structure model' pdbx_initial_refinement_model 9 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_exptl_crystal_grow.temp' 2 4 'Structure model' '_pdbx_database_status.recvd_author_approval' 3 5 'Structure model' '_database_2.pdbx_DOI' 4 5 'Structure model' '_database_2.pdbx_database_accession' 5 5 'Structure model' '_pdbx_database_status.status_code_sf' 6 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 7 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 8 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.5.0072 ? 1 MOSFLM 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 MOLREP phasing . ? 4 # _pdbx_entry_details.entry_id 2XKH _pdbx_entry_details.compound_details 'ENGINEERED RESIDUE IN CHAIN A, LEU 87 TO ALA' _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'UNP LEU87 HAS BEEN MUTATED TO ALA (RESIDUE 86 IN COORDINATES)' _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CE2 _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 TYR _pdbx_validate_rmsd_bond.auth_seq_id_1 11 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 CD2 _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 TYR _pdbx_validate_rmsd_bond.auth_seq_id_2 11 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.270 _pdbx_validate_rmsd_bond.bond_target_value 1.389 _pdbx_validate_rmsd_bond.bond_deviation -0.119 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.015 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HEM CHA C N N 137 HEM CHB C N N 138 HEM CHC C N N 139 HEM CHD C N N 140 HEM C1A C Y N 141 HEM C2A C Y N 142 HEM C3A C Y N 143 HEM C4A C Y N 144 HEM CMA C N N 145 HEM CAA C N N 146 HEM CBA C N N 147 HEM CGA C N N 148 HEM O1A O N N 149 HEM O2A O N N 150 HEM C1B C N N 151 HEM C2B C N N 152 HEM C3B C N N 153 HEM C4B C N N 154 HEM CMB C N N 155 HEM CAB C N N 156 HEM CBB C N N 157 HEM C1C C Y N 158 HEM C2C C Y N 159 HEM C3C C Y N 160 HEM C4C C Y N 161 HEM CMC C N N 162 HEM CAC C N N 163 HEM CBC C N N 164 HEM C1D C N N 165 HEM C2D C N N 166 HEM C3D C N N 167 HEM C4D C N N 168 HEM CMD C N N 169 HEM CAD C N N 170 HEM CBD C N N 171 HEM CGD C N N 172 HEM O1D O N N 173 HEM O2D O N N 174 HEM NA N Y N 175 HEM NB N N N 176 HEM NC N Y N 177 HEM ND N N N 178 HEM FE FE N N 179 HEM HHB H N N 180 HEM HHC H N N 181 HEM HHD H N N 182 HEM HMA H N N 183 HEM HMAA H N N 184 HEM HMAB H N N 185 HEM HAA H N N 186 HEM HAAA H N N 187 HEM HBA H N N 188 HEM HBAA H N N 189 HEM HMB H N N 190 HEM HMBA H N N 191 HEM HMBB H N N 192 HEM HAB H N N 193 HEM HBB H N N 194 HEM HBBA H N N 195 HEM HMC H N N 196 HEM HMCA H N N 197 HEM HMCB H N N 198 HEM HAC H N N 199 HEM HBC H N N 200 HEM HBCA H N N 201 HEM HMD H N N 202 HEM HMDA H N N 203 HEM HMDB H N N 204 HEM HAD H N N 205 HEM HADA H N N 206 HEM HBD H N N 207 HEM HBDA H N N 208 HEM H2A H N N 209 HEM H2D H N N 210 HEM HHA H N N 211 HIS N N N N 212 HIS CA C N S 213 HIS C C N N 214 HIS O O N N 215 HIS CB C N N 216 HIS CG C Y N 217 HIS ND1 N Y N 218 HIS CD2 C Y N 219 HIS CE1 C Y N 220 HIS NE2 N Y N 221 HIS OXT O N N 222 HIS H H N N 223 HIS H2 H N N 224 HIS HA H N N 225 HIS HB2 H N N 226 HIS HB3 H N N 227 HIS HD1 H N N 228 HIS HD2 H N N 229 HIS HE1 H N N 230 HIS HE2 H N N 231 HIS HXT H N N 232 HOH O O N N 233 HOH H1 H N N 234 HOH H2 H N N 235 ILE N N N N 236 ILE CA C N S 237 ILE C C N N 238 ILE O O N N 239 ILE CB C N S 240 ILE CG1 C N N 241 ILE CG2 C N N 242 ILE CD1 C N N 243 ILE OXT O N N 244 ILE H H N N 245 ILE H2 H N N 246 ILE HA H N N 247 ILE HB H N N 248 ILE HG12 H N N 249 ILE HG13 H N N 250 ILE HG21 H N N 251 ILE HG22 H N N 252 ILE HG23 H N N 253 ILE HD11 H N N 254 ILE HD12 H N N 255 ILE HD13 H N N 256 ILE HXT H N N 257 LEU N N N N 258 LEU CA C N S 259 LEU C C N N 260 LEU O O N N 261 LEU CB C N N 262 LEU CG C N N 263 LEU CD1 C N N 264 LEU CD2 C N N 265 LEU OXT O N N 266 LEU H H N N 267 LEU H2 H N N 268 LEU HA H N N 269 LEU HB2 H N N 270 LEU HB3 H N N 271 LEU HG H N N 272 LEU HD11 H N N 273 LEU HD12 H N N 274 LEU HD13 H N N 275 LEU HD21 H N N 276 LEU HD22 H N N 277 LEU HD23 H N N 278 LEU HXT H N N 279 LYS N N N N 280 LYS CA C N S 281 LYS C C N N 282 LYS O O N N 283 LYS CB C N N 284 LYS CG C N N 285 LYS CD C N N 286 LYS CE C N N 287 LYS NZ N N N 288 LYS OXT O N N 289 LYS H H N N 290 LYS H2 H N N 291 LYS HA H N N 292 LYS HB2 H N N 293 LYS HB3 H N N 294 LYS HG2 H N N 295 LYS HG3 H N N 296 LYS HD2 H N N 297 LYS HD3 H N N 298 LYS HE2 H N N 299 LYS HE3 H N N 300 LYS HZ1 H N N 301 LYS HZ2 H N N 302 LYS HZ3 H N N 303 LYS HXT H N N 304 MET N N N N 305 MET CA C N S 306 MET C C N N 307 MET O O N N 308 MET CB C N N 309 MET CG C N N 310 MET SD S N N 311 MET CE C N N 312 MET OXT O N N 313 MET H H N N 314 MET H2 H N N 315 MET HA H N N 316 MET HB2 H N N 317 MET HB3 H N N 318 MET HG2 H N N 319 MET HG3 H N N 320 MET HE1 H N N 321 MET HE2 H N N 322 MET HE3 H N N 323 MET HXT H N N 324 OXY O1 O N N 325 OXY O2 O N N 326 PHE N N N N 327 PHE CA C N S 328 PHE C C N N 329 PHE O O N N 330 PHE CB C N N 331 PHE CG C Y N 332 PHE CD1 C Y N 333 PHE CD2 C Y N 334 PHE CE1 C Y N 335 PHE CE2 C Y N 336 PHE CZ C Y N 337 PHE OXT O N N 338 PHE H H N N 339 PHE H2 H N N 340 PHE HA H N N 341 PHE HB2 H N N 342 PHE HB3 H N N 343 PHE HD1 H N N 344 PHE HD2 H N N 345 PHE HE1 H N N 346 PHE HE2 H N N 347 PHE HZ H N N 348 PHE HXT H N N 349 PRO N N N N 350 PRO CA C N S 351 PRO C C N N 352 PRO O O N N 353 PRO CB C N N 354 PRO CG C N N 355 PRO CD C N N 356 PRO OXT O N N 357 PRO H H N N 358 PRO HA H N N 359 PRO HB2 H N N 360 PRO HB3 H N N 361 PRO HG2 H N N 362 PRO HG3 H N N 363 PRO HD2 H N N 364 PRO HD3 H N N 365 PRO HXT H N N 366 SER N N N N 367 SER CA C N S 368 SER C C N N 369 SER O O N N 370 SER CB C N N 371 SER OG O N N 372 SER OXT O N N 373 SER H H N N 374 SER H2 H N N 375 SER HA H N N 376 SER HB2 H N N 377 SER HB3 H N N 378 SER HG H N N 379 SER HXT H N N 380 SO4 S S N N 381 SO4 O1 O N N 382 SO4 O2 O N N 383 SO4 O3 O N N 384 SO4 O4 O N N 385 THR N N N N 386 THR CA C N S 387 THR C C N N 388 THR O O N N 389 THR CB C N R 390 THR OG1 O N N 391 THR CG2 C N N 392 THR OXT O N N 393 THR H H N N 394 THR H2 H N N 395 THR HA H N N 396 THR HB H N N 397 THR HG1 H N N 398 THR HG21 H N N 399 THR HG22 H N N 400 THR HG23 H N N 401 THR HXT H N N 402 TRP N N N N 403 TRP CA C N S 404 TRP C C N N 405 TRP O O N N 406 TRP CB C N N 407 TRP CG C Y N 408 TRP CD1 C Y N 409 TRP CD2 C Y N 410 TRP NE1 N Y N 411 TRP CE2 C Y N 412 TRP CE3 C Y N 413 TRP CZ2 C Y N 414 TRP CZ3 C Y N 415 TRP CH2 C Y N 416 TRP OXT O N N 417 TRP H H N N 418 TRP H2 H N N 419 TRP HA H N N 420 TRP HB2 H N N 421 TRP HB3 H N N 422 TRP HD1 H N N 423 TRP HE1 H N N 424 TRP HE3 H N N 425 TRP HZ2 H N N 426 TRP HZ3 H N N 427 TRP HH2 H N N 428 TRP HXT H N N 429 TYR N N N N 430 TYR CA C N S 431 TYR C C N N 432 TYR O O N N 433 TYR CB C N N 434 TYR CG C Y N 435 TYR CD1 C Y N 436 TYR CD2 C Y N 437 TYR CE1 C Y N 438 TYR CE2 C Y N 439 TYR CZ C Y N 440 TYR OH O N N 441 TYR OXT O N N 442 TYR H H N N 443 TYR H2 H N N 444 TYR HA H N N 445 TYR HB2 H N N 446 TYR HB3 H N N 447 TYR HD1 H N N 448 TYR HD2 H N N 449 TYR HE1 H N N 450 TYR HE2 H N N 451 TYR HH H N N 452 TYR HXT H N N 453 VAL N N N N 454 VAL CA C N S 455 VAL C C N N 456 VAL O O N N 457 VAL CB C N N 458 VAL CG1 C N N 459 VAL CG2 C N N 460 VAL OXT O N N 461 VAL H H N N 462 VAL H2 H N N 463 VAL HA H N N 464 VAL HB H N N 465 VAL HG11 H N N 466 VAL HG12 H N N 467 VAL HG13 H N N 468 VAL HG21 H N N 469 VAL HG22 H N N 470 VAL HG23 H N N 471 VAL HXT H N N 472 XE XE XE N N 473 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HEM CHA C1A sing N N 129 HEM CHA C4D doub N N 130 HEM CHA HHA sing N N 131 HEM CHB C4A sing N N 132 HEM CHB C1B doub N N 133 HEM CHB HHB sing N N 134 HEM CHC C4B sing N N 135 HEM CHC C1C doub N N 136 HEM CHC HHC sing N N 137 HEM CHD C4C doub N N 138 HEM CHD C1D sing N N 139 HEM CHD HHD sing N N 140 HEM C1A C2A doub Y N 141 HEM C1A NA sing Y N 142 HEM C2A C3A sing Y N 143 HEM C2A CAA sing N N 144 HEM C3A C4A doub Y N 145 HEM C3A CMA sing N N 146 HEM C4A NA sing Y N 147 HEM CMA HMA sing N N 148 HEM CMA HMAA sing N N 149 HEM CMA HMAB sing N N 150 HEM CAA CBA sing N N 151 HEM CAA HAA sing N N 152 HEM CAA HAAA sing N N 153 HEM CBA CGA sing N N 154 HEM CBA HBA sing N N 155 HEM CBA HBAA sing N N 156 HEM CGA O1A doub N N 157 HEM CGA O2A sing N N 158 HEM C1B C2B sing N N 159 HEM C1B NB sing N N 160 HEM C2B C3B doub N N 161 HEM C2B CMB sing N N 162 HEM C3B C4B sing N N 163 HEM C3B CAB sing N N 164 HEM C4B NB doub N N 165 HEM CMB HMB sing N N 166 HEM CMB HMBA sing N N 167 HEM CMB HMBB sing N N 168 HEM CAB CBB doub N N 169 HEM CAB HAB sing N N 170 HEM CBB HBB sing N N 171 HEM CBB HBBA sing N N 172 HEM C1C C2C sing Y N 173 HEM C1C NC sing Y N 174 HEM C2C C3C doub Y N 175 HEM C2C CMC sing N N 176 HEM C3C C4C sing Y N 177 HEM C3C CAC sing N N 178 HEM C4C NC sing Y N 179 HEM CMC HMC sing N N 180 HEM CMC HMCA sing N N 181 HEM CMC HMCB sing N N 182 HEM CAC CBC doub N N 183 HEM CAC HAC sing N N 184 HEM CBC HBC sing N N 185 HEM CBC HBCA sing N N 186 HEM C1D C2D sing N N 187 HEM C1D ND doub N N 188 HEM C2D C3D doub N N 189 HEM C2D CMD sing N N 190 HEM C3D C4D sing N N 191 HEM C3D CAD sing N N 192 HEM C4D ND sing N N 193 HEM CMD HMD sing N N 194 HEM CMD HMDA sing N N 195 HEM CMD HMDB sing N N 196 HEM CAD CBD sing N N 197 HEM CAD HAD sing N N 198 HEM CAD HADA sing N N 199 HEM CBD CGD sing N N 200 HEM CBD HBD sing N N 201 HEM CBD HBDA sing N N 202 HEM CGD O1D doub N N 203 HEM CGD O2D sing N N 204 HEM O2A H2A sing N N 205 HEM O2D H2D sing N N 206 HEM FE NA sing N N 207 HEM FE NB sing N N 208 HEM FE NC sing N N 209 HEM FE ND sing N N 210 HIS N CA sing N N 211 HIS N H sing N N 212 HIS N H2 sing N N 213 HIS CA C sing N N 214 HIS CA CB sing N N 215 HIS CA HA sing N N 216 HIS C O doub N N 217 HIS C OXT sing N N 218 HIS CB CG sing N N 219 HIS CB HB2 sing N N 220 HIS CB HB3 sing N N 221 HIS CG ND1 sing Y N 222 HIS CG CD2 doub Y N 223 HIS ND1 CE1 doub Y N 224 HIS ND1 HD1 sing N N 225 HIS CD2 NE2 sing Y N 226 HIS CD2 HD2 sing N N 227 HIS CE1 NE2 sing Y N 228 HIS CE1 HE1 sing N N 229 HIS NE2 HE2 sing N N 230 HIS OXT HXT sing N N 231 HOH O H1 sing N N 232 HOH O H2 sing N N 233 ILE N CA sing N N 234 ILE N H sing N N 235 ILE N H2 sing N N 236 ILE CA C sing N N 237 ILE CA CB sing N N 238 ILE CA HA sing N N 239 ILE C O doub N N 240 ILE C OXT sing N N 241 ILE CB CG1 sing N N 242 ILE CB CG2 sing N N 243 ILE CB HB sing N N 244 ILE CG1 CD1 sing N N 245 ILE CG1 HG12 sing N N 246 ILE CG1 HG13 sing N N 247 ILE CG2 HG21 sing N N 248 ILE CG2 HG22 sing N N 249 ILE CG2 HG23 sing N N 250 ILE CD1 HD11 sing N N 251 ILE CD1 HD12 sing N N 252 ILE CD1 HD13 sing N N 253 ILE OXT HXT sing N N 254 LEU N CA sing N N 255 LEU N H sing N N 256 LEU N H2 sing N N 257 LEU CA C sing N N 258 LEU CA CB sing N N 259 LEU CA HA sing N N 260 LEU C O doub N N 261 LEU C OXT sing N N 262 LEU CB CG sing N N 263 LEU CB HB2 sing N N 264 LEU CB HB3 sing N N 265 LEU CG CD1 sing N N 266 LEU CG CD2 sing N N 267 LEU CG HG sing N N 268 LEU CD1 HD11 sing N N 269 LEU CD1 HD12 sing N N 270 LEU CD1 HD13 sing N N 271 LEU CD2 HD21 sing N N 272 LEU CD2 HD22 sing N N 273 LEU CD2 HD23 sing N N 274 LEU OXT HXT sing N N 275 LYS N CA sing N N 276 LYS N H sing N N 277 LYS N H2 sing N N 278 LYS CA C sing N N 279 LYS CA CB sing N N 280 LYS CA HA sing N N 281 LYS C O doub N N 282 LYS C OXT sing N N 283 LYS CB CG sing N N 284 LYS CB HB2 sing N N 285 LYS CB HB3 sing N N 286 LYS CG CD sing N N 287 LYS CG HG2 sing N N 288 LYS CG HG3 sing N N 289 LYS CD CE sing N N 290 LYS CD HD2 sing N N 291 LYS CD HD3 sing N N 292 LYS CE NZ sing N N 293 LYS CE HE2 sing N N 294 LYS CE HE3 sing N N 295 LYS NZ HZ1 sing N N 296 LYS NZ HZ2 sing N N 297 LYS NZ HZ3 sing N N 298 LYS OXT HXT sing N N 299 MET N CA sing N N 300 MET N H sing N N 301 MET N H2 sing N N 302 MET CA C sing N N 303 MET CA CB sing N N 304 MET CA HA sing N N 305 MET C O doub N N 306 MET C OXT sing N N 307 MET CB CG sing N N 308 MET CB HB2 sing N N 309 MET CB HB3 sing N N 310 MET CG SD sing N N 311 MET CG HG2 sing N N 312 MET CG HG3 sing N N 313 MET SD CE sing N N 314 MET CE HE1 sing N N 315 MET CE HE2 sing N N 316 MET CE HE3 sing N N 317 MET OXT HXT sing N N 318 OXY O1 O2 doub N N 319 PHE N CA sing N N 320 PHE N H sing N N 321 PHE N H2 sing N N 322 PHE CA C sing N N 323 PHE CA CB sing N N 324 PHE CA HA sing N N 325 PHE C O doub N N 326 PHE C OXT sing N N 327 PHE CB CG sing N N 328 PHE CB HB2 sing N N 329 PHE CB HB3 sing N N 330 PHE CG CD1 doub Y N 331 PHE CG CD2 sing Y N 332 PHE CD1 CE1 sing Y N 333 PHE CD1 HD1 sing N N 334 PHE CD2 CE2 doub Y N 335 PHE CD2 HD2 sing N N 336 PHE CE1 CZ doub Y N 337 PHE CE1 HE1 sing N N 338 PHE CE2 CZ sing Y N 339 PHE CE2 HE2 sing N N 340 PHE CZ HZ sing N N 341 PHE OXT HXT sing N N 342 PRO N CA sing N N 343 PRO N CD sing N N 344 PRO N H sing N N 345 PRO CA C sing N N 346 PRO CA CB sing N N 347 PRO CA HA sing N N 348 PRO C O doub N N 349 PRO C OXT sing N N 350 PRO CB CG sing N N 351 PRO CB HB2 sing N N 352 PRO CB HB3 sing N N 353 PRO CG CD sing N N 354 PRO CG HG2 sing N N 355 PRO CG HG3 sing N N 356 PRO CD HD2 sing N N 357 PRO CD HD3 sing N N 358 PRO OXT HXT sing N N 359 SER N CA sing N N 360 SER N H sing N N 361 SER N H2 sing N N 362 SER CA C sing N N 363 SER CA CB sing N N 364 SER CA HA sing N N 365 SER C O doub N N 366 SER C OXT sing N N 367 SER CB OG sing N N 368 SER CB HB2 sing N N 369 SER CB HB3 sing N N 370 SER OG HG sing N N 371 SER OXT HXT sing N N 372 SO4 S O1 doub N N 373 SO4 S O2 doub N N 374 SO4 S O3 sing N N 375 SO4 S O4 sing N N 376 THR N CA sing N N 377 THR N H sing N N 378 THR N H2 sing N N 379 THR CA C sing N N 380 THR CA CB sing N N 381 THR CA HA sing N N 382 THR C O doub N N 383 THR C OXT sing N N 384 THR CB OG1 sing N N 385 THR CB CG2 sing N N 386 THR CB HB sing N N 387 THR OG1 HG1 sing N N 388 THR CG2 HG21 sing N N 389 THR CG2 HG22 sing N N 390 THR CG2 HG23 sing N N 391 THR OXT HXT sing N N 392 TRP N CA sing N N 393 TRP N H sing N N 394 TRP N H2 sing N N 395 TRP CA C sing N N 396 TRP CA CB sing N N 397 TRP CA HA sing N N 398 TRP C O doub N N 399 TRP C OXT sing N N 400 TRP CB CG sing N N 401 TRP CB HB2 sing N N 402 TRP CB HB3 sing N N 403 TRP CG CD1 doub Y N 404 TRP CG CD2 sing Y N 405 TRP CD1 NE1 sing Y N 406 TRP CD1 HD1 sing N N 407 TRP CD2 CE2 doub Y N 408 TRP CD2 CE3 sing Y N 409 TRP NE1 CE2 sing Y N 410 TRP NE1 HE1 sing N N 411 TRP CE2 CZ2 sing Y N 412 TRP CE3 CZ3 doub Y N 413 TRP CE3 HE3 sing N N 414 TRP CZ2 CH2 doub Y N 415 TRP CZ2 HZ2 sing N N 416 TRP CZ3 CH2 sing Y N 417 TRP CZ3 HZ3 sing N N 418 TRP CH2 HH2 sing N N 419 TRP OXT HXT sing N N 420 TYR N CA sing N N 421 TYR N H sing N N 422 TYR N H2 sing N N 423 TYR CA C sing N N 424 TYR CA CB sing N N 425 TYR CA HA sing N N 426 TYR C O doub N N 427 TYR C OXT sing N N 428 TYR CB CG sing N N 429 TYR CB HB2 sing N N 430 TYR CB HB3 sing N N 431 TYR CG CD1 doub Y N 432 TYR CG CD2 sing Y N 433 TYR CD1 CE1 sing Y N 434 TYR CD1 HD1 sing N N 435 TYR CD2 CE2 doub Y N 436 TYR CD2 HD2 sing N N 437 TYR CE1 CZ doub Y N 438 TYR CE1 HE1 sing N N 439 TYR CE2 CZ sing Y N 440 TYR CE2 HE2 sing N N 441 TYR CZ OH sing N N 442 TYR OH HH sing N N 443 TYR OXT HXT sing N N 444 VAL N CA sing N N 445 VAL N H sing N N 446 VAL N H2 sing N N 447 VAL CA C sing N N 448 VAL CA CB sing N N 449 VAL CA HA sing N N 450 VAL C O doub N N 451 VAL C OXT sing N N 452 VAL CB CG1 sing N N 453 VAL CB CG2 sing N N 454 VAL CB HB sing N N 455 VAL CG1 HG11 sing N N 456 VAL CG1 HG12 sing N N 457 VAL CG1 HG13 sing N N 458 VAL CG2 HG21 sing N N 459 VAL CG2 HG22 sing N N 460 VAL CG2 HG23 sing N N 461 VAL OXT HXT sing N N 462 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'PROTOPORPHYRIN IX CONTAINING FE' HEM 3 'OXYGEN MOLECULE' OXY 4 'SULFATE ION' SO4 5 XENON XE 6 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1KR7 _pdbx_initial_refinement_model.details 'PDB ENTRY 1KR7' #