HEADER METAL BINDING PROTEIN 19-JUL-10 2XL7 TITLE STRUCTURE AND METAL-LOADING OF A SOLUBLE PERIPLASM CUPRO-PROTEIN: CU- TITLE 2 CUCA-CLOSED (SEMET) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SLL1785 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CUCA; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCYSTIS SP. PCC 6803; SOURCE 3 ORGANISM_TAXID: 1148; SOURCE 4 ATCC: 27184; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B834(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET29A KEYWDS METAL BINDING PROTEIN, CUPIN EXPDTA X-RAY DIFFRACTION AUTHOR K.J.WALDRON,S.J.FIRBANK,S.J.DAINTY,M.PEREZ-RAMA,S.TOTTEY,N.J.ROBINSON REVDAT 3 20-DEC-23 2XL7 1 REMARK LINK REVDAT 2 18-MAY-11 2XL7 1 JRNL REMARK REVDAT 1 11-AUG-10 2XL7 0 JRNL AUTH K.J.WALDRON,S.J.FIRBANK,S.J.DAINTY,M.PEREZ-RAMA,S.TOTTEY, JRNL AUTH 2 N.J.ROBINSON JRNL TITL STRUCTURE AND METAL LOADING OF A SOLUBLE PERIPLASM JRNL TITL 2 CUPROPROTEIN. JRNL REF J.BIOL.CHEM. V. 285 32504 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 20702411 JRNL DOI 10.1074/JBC.M110.153080 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0070 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.24 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 17157 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 913 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1247 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1920 REMARK 3 BIN FREE R VALUE SET COUNT : 68 REMARK 3 BIN FREE R VALUE : 0.2380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1848 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 197 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.28000 REMARK 3 B22 (A**2) : 0.28000 REMARK 3 B33 (A**2) : -0.42000 REMARK 3 B12 (A**2) : 0.14000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.205 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.181 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.110 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.986 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1916 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2616 ; 1.298 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 236 ; 6.229 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 92 ;32.558 ;24.674 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 287 ;12.567 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;22.080 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 274 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1524 ; 0.006 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1186 ; 0.566 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1922 ; 1.117 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 730 ; 1.872 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 693 ; 3.099 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 34 A 268 REMARK 3 ORIGIN FOR THE GROUP (A): 15.6985 21.6162 11.5584 REMARK 3 T TENSOR REMARK 3 T11: 0.0041 T22: 0.0005 REMARK 3 T33: 0.0022 T12: -0.0014 REMARK 3 T13: -0.0002 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 0.1853 L22: 0.2320 REMARK 3 L33: 0.1523 L12: 0.1225 REMARK 3 L13: -0.0429 L23: -0.0241 REMARK 3 S TENSOR REMARK 3 S11: 0.0031 S12: -0.0035 S13: -0.0152 REMARK 3 S21: -0.0204 S22: 0.0044 S23: -0.0148 REMARK 3 S31: 0.0069 S32: -0.0029 S33: -0.0075 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U REMARK 3 FACTORS. REMARK 4 REMARK 4 2XL7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1290044678. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18072 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 60.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.34000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2XL9 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5, 20% (W/V) PEG REMARK 280 8000, 0.5MM CUSO4 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.13967 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 128.27933 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 64.13967 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 128.27933 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 64.13967 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 128.27933 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 64.13967 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 128.27933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -63.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 44.24150 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 76.62853 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2080 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2188 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 30 REMARK 465 ALA A 31 REMARK 465 GLU A 32 REMARK 465 THR A 33 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 45 CD CE NZ REMARK 470 ASP A 48 CG OD1 OD2 REMARK 470 LYS A 68 CG CD CE NZ REMARK 470 LYS A 157 CE NZ REMARK 470 LYS A 234 CD CE NZ REMARK 470 LYS A 243 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 146 -14.35 93.74 REMARK 500 ASN A 244 71.68 -153.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A1270 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 36 ND1 REMARK 620 2 ASP A 39 OD2 93.4 REMARK 620 3 HOH A2003 O 157.8 108.8 REMARK 620 4 HOH A2005 O 98.2 79.0 88.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A1269 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 88 NE2 REMARK 620 2 HIS A 90 NE2 95.6 REMARK 620 3 GLU A 95 OE1 172.4 88.7 REMARK 620 4 HIS A 149 NE2 94.4 102.3 78.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 1269 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 1270 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE URE A 1271 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1272 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2XLG RELATED DB: PDB REMARK 900 STRUCTURE AND METAL-LOADING OF A SOLUBLE PERIPLASM CUPRO-PROTEIN: REMARK 900 CU-CUCA-OPEN REMARK 900 RELATED ID: 2XLF RELATED DB: PDB REMARK 900 STRUCTURE AND METAL-LOADING OF A SOLUBLE PERIPLASM CUPRO-PROTEIN: REMARK 900 APO-CUCA-CLOSED (SEMET) REMARK 900 RELATED ID: 2XL9 RELATED DB: PDB REMARK 900 STRUCTURE AND METAL-LOADING OF A SOLUBLE PERIPLASM CUPRO-PROTEIN: REMARK 900 ZN-CUCA-CLOSED (SEMET) REMARK 900 RELATED ID: 2XLA RELATED DB: PDB REMARK 900 STRUCTURE AND METAL-LOADING OF A SOLUBLE PERIPLASM CUPRO-PROTEIN: REMARK 900 CU-CUCA-CLOSED DBREF 2XL7 A 31 268 UNP P73600 P73600_SYNY3 31 268 SEQADV 2XL7 MSE A 30 UNP P73600 EXPRESSION TAG SEQRES 1 A 239 MSE ALA GLU THR GLU ILE HIS THR PHE ASP ASP ILE PRO SEQRES 2 A 239 MSE PRO LYS LEU ALA ASP PRO LEU LEU ILE TYR THR PRO SEQRES 3 A 239 ALA ASN GLU ILE PHE ASP ILE ALA SER CYS SER ALA LYS SEQRES 4 A 239 ASP ILE GLY PHE ALA ILE ALA HIS ALA GLN ILE PRO PRO SEQRES 5 A 239 GLY GLY GLY PRO MSE PRO HIS ILE HIS TYR PHE ILE ASN SEQRES 6 A 239 GLU TRP PHE TRP THR PRO GLU GLY GLY ILE GLU LEU PHE SEQRES 7 A 239 HIS SER THR LYS GLN TYR PRO ASN MSE ASP GLU LEU PRO SEQRES 8 A 239 VAL VAL GLY GLY ALA GLY ARG GLY ASP LEU TYR SER ILE SEQRES 9 A 239 GLN SER GLU PRO LYS GLN LEU ILE TYR SER PRO ASN HIS SEQRES 10 A 239 TYR MSE HIS GLY PHE VAL ASN PRO THR ASP LYS THR LEU SEQRES 11 A 239 PRO ILE VAL PHE VAL TRP MSE ARG ASN GLU VAL ALA PRO SEQRES 12 A 239 ASP PHE PRO TYR HIS ASP GLY GLY MSE ARG GLU TYR PHE SEQRES 13 A 239 GLN ALA VAL GLY PRO ARG ILE THR ASP LEU ASN ASN LEU SEQRES 14 A 239 PRO GLU LEU THR ASN ALA GLN ARG ALA ALA PHE ALA SER SEQRES 15 A 239 GLU ALA PRO LYS TYR GLY ILE ASN GLN SER SER TYR PHE SEQRES 16 A 239 MSE GLU TYR VAL ASN THR ILE SER ASP LYS LEU PRO ALA SEQRES 17 A 239 GLN ILE ALA LYS LEU LYS ASN ASP LYS ASP LEU GLU ARG SEQRES 18 A 239 MSE VAL GLU VAL ILE GLU ALA PHE ASN ARG GLY ASP LYS SEQRES 19 A 239 SER VAL THR CYS SER MODRES 2XL7 MSE A 43 MET SELENOMETHIONINE MODRES 2XL7 MSE A 86 MET SELENOMETHIONINE MODRES 2XL7 MSE A 116 MET SELENOMETHIONINE MODRES 2XL7 MSE A 148 MET SELENOMETHIONINE MODRES 2XL7 MSE A 166 MET SELENOMETHIONINE MODRES 2XL7 MSE A 181 MET SELENOMETHIONINE MODRES 2XL7 MSE A 225 MET SELENOMETHIONINE MODRES 2XL7 MSE A 251 MET SELENOMETHIONINE HET MSE A 43 8 HET MSE A 86 8 HET MSE A 116 13 HET MSE A 148 8 HET MSE A 166 8 HET MSE A 181 8 HET MSE A 225 8 HET MSE A 251 8 HET CU A1269 1 HET CU A1270 1 HET URE A1271 4 HET CL A1272 1 HETNAM MSE SELENOMETHIONINE HETNAM CU COPPER (II) ION HETNAM URE UREA HETNAM CL CHLORIDE ION FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 2 CU 2(CU 2+) FORMUL 4 URE C H4 N2 O FORMUL 5 CL CL 1- FORMUL 6 HOH *197(H2 O) HELIX 1 1 GLY A 180 GLY A 189 1 10 HELIX 2 2 THR A 202 GLU A 212 1 11 HELIX 3 3 ALA A 213 TYR A 216 5 4 HELIX 4 4 TYR A 223 GLU A 226 5 4 HELIX 5 5 PRO A 236 LYS A 241 1 6 HELIX 6 6 ASN A 244 ARG A 260 1 17 SHEET 1 AA 2 LEU A 50 THR A 54 0 SHEET 2 AA 2 GLU A 58 SER A 66 -1 O GLU A 58 N THR A 54 SHEET 1 AB 6 LEU A 140 SER A 143 0 SHEET 2 AB 6 ILE A 93 TRP A 98 -1 O GLU A 95 N SER A 143 SHEET 3 AB 6 LEU A 159 ARG A 167 -1 O VAL A 162 N TRP A 98 SHEET 4 AB 6 GLY A 71 ILE A 79 -1 O GLY A 71 N ARG A 167 SHEET 5 AB 6 GLU A 58 SER A 66 -1 O ILE A 59 N GLN A 78 SHEET 6 AB 6 THR A 266 CYS A 267 1 O THR A 266 N SER A 66 SHEET 1 AC 6 LEU A 140 SER A 143 0 SHEET 2 AC 6 ILE A 93 TRP A 98 -1 O GLU A 95 N SER A 143 SHEET 3 AC 6 LEU A 159 ARG A 167 -1 O VAL A 162 N TRP A 98 SHEET 4 AC 6 GLY A 71 ILE A 79 -1 O GLY A 71 N ARG A 167 SHEET 5 AC 6 GLU A 58 SER A 66 -1 O ILE A 59 N GLN A 78 SHEET 6 AC 6 LEU A 50 THR A 54 -1 O LEU A 50 N ILE A 62 SHEET 1 AD 2 THR A 266 CYS A 267 0 SHEET 2 AD 2 GLU A 58 SER A 66 1 O SER A 66 N THR A 266 SHEET 1 AE 6 ILE A 218 GLN A 220 0 SHEET 2 AE 6 HIS A 88 HIS A 90 -1 O ILE A 89 N ASN A 219 SHEET 3 AE 6 TYR A 147 VAL A 152 -1 O TYR A 147 N HIS A 90 SHEET 4 AE 6 GLU A 105 GLN A 112 -1 O GLU A 105 N VAL A 152 SHEET 5 AE 6 GLY A 128 GLN A 134 -1 O TYR A 131 N HIS A 108 SHEET 6 AE 6 VAL A 228 SER A 232 1 N ASN A 229 O GLY A 128 SSBOND 1 CYS A 65 CYS A 267 1555 1555 2.05 LINK C PRO A 42 N MSE A 43 1555 1555 1.33 LINK C MSE A 43 N PRO A 44 1555 1555 1.35 LINK C PRO A 85 N MSE A 86 1555 1555 1.34 LINK C MSE A 86 N PRO A 87 1555 1555 1.35 LINK C ASN A 115 N MSE A 116 1555 1555 1.34 LINK C MSE A 116 N ASP A 117 1555 1555 1.33 LINK C TYR A 147 N MSE A 148 1555 1555 1.33 LINK C MSE A 148 N HIS A 149 1555 1555 1.33 LINK C TRP A 165 N MSE A 166 1555 1555 1.33 LINK C MSE A 166 N ARG A 167 1555 1555 1.33 LINK C GLY A 180 N MSE A 181 1555 1555 1.33 LINK C MSE A 181 N ARG A 182 1555 1555 1.34 LINK C PHE A 224 N MSE A 225 1555 1555 1.33 LINK C MSE A 225 N GLU A 226 1555 1555 1.33 LINK C ARG A 250 N MSE A 251 1555 1555 1.33 LINK C MSE A 251 N VAL A 252 1555 1555 1.34 LINK ND1 HIS A 36 CU CU A1270 1555 1555 1.87 LINK OD2 ASP A 39 CU CU A1270 11555 1555 2.15 LINK NE2 HIS A 88 CU CU A1269 1555 1555 2.01 LINK NE2 HIS A 90 CU CU A1269 1555 1555 2.09 LINK OE1 GLU A 95 CU CU A1269 1555 1555 2.02 LINK NE2 HIS A 149 CU CU A1269 1555 1555 2.24 LINK CU CU A1270 O HOH A2003 1555 1555 2.64 LINK CU CU A1270 O HOH A2005 1555 11555 2.67 SITE 1 AC1 5 HIS A 88 HIS A 90 GLU A 95 HIS A 149 SITE 2 AC1 5 HOH A2047 SITE 1 AC2 4 HIS A 36 ASP A 39 HOH A2003 HOH A2005 SITE 1 AC3 5 GLU A 58 PRO A 85 PHE A 185 PHE A 209 SITE 2 AC3 5 HOH A2047 SITE 1 AC4 1 ARG A 127 CRYST1 88.483 88.483 192.419 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011302 0.006525 0.000000 0.00000 SCALE2 0.000000 0.013050 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005197 0.00000