HEADER METAL BINDING PROTEIN 20-JUL-10 2XL9 TITLE STRUCTURE AND METAL-LOADING OF A SOLUBLE PERIPLASM CUPRO-PROTEIN: ZN- TITLE 2 CUCA-CLOSED (SEMET) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SLL1785 PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 31-268; COMPND 5 SYNONYM: CUCA; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCYSTIS SP. PCC 6803; SOURCE 3 ORGANISM_TAXID: 1148; SOURCE 4 ATCC: 27184; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B834(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET29A KEYWDS METAL BINDING PROTEIN, CUPIN EXPDTA X-RAY DIFFRACTION AUTHOR K.J.WALDRON,S.J.FIRBANK,S.J.DAINTY,M.PEREZ-RAMA,S.TOTTEY,N.J.ROBINSON REVDAT 3 25-SEP-19 2XL9 1 JRNL REMARK LINK REVDAT 2 18-MAY-11 2XL9 1 JRNL REMARK REVDAT 1 11-AUG-10 2XL9 0 JRNL AUTH K.J.WALDRON,S.J.FIRBANK,S.J.DAINTY,M.PEREZ-RAMA,S.TOTTEY, JRNL AUTH 2 N.J.ROBINSON JRNL TITL STRUCTURE AND METAL LOADING OF A SOLUBLE PERIPLASM JRNL TITL 2 CUPROPROTEIN. JRNL REF J.BIOL.CHEM. V. 285 32504 2010 JRNL REFN ESSN 1083-351X JRNL PMID 20702411 JRNL DOI 10.1074/JBC.M110.153080 REMARK 2 REMARK 2 RESOLUTION. 2.06 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.06 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.11 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 30085 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1603 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.06 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.11 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1721 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 75.51 REMARK 3 BIN R VALUE (WORKING SET) : 0.2380 REMARK 3 BIN FREE R VALUE SET COUNT : 92 REMARK 3 BIN FREE R VALUE : 0.2860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3661 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 316 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.89000 REMARK 3 B22 (A**2) : 1.10000 REMARK 3 B33 (A**2) : -1.99000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.215 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.183 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.124 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.749 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3792 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5176 ; 1.298 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 465 ; 6.351 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 180 ;34.584 ;24.556 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 566 ;14.445 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;19.592 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 543 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3000 ; 0.006 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2347 ; 0.525 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3805 ; 0.950 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1445 ; 1.752 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1370 ; 2.695 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 34 A 268 REMARK 3 ORIGIN FOR THE GROUP (A): 46.6361 52.2357 55.5661 REMARK 3 T TENSOR REMARK 3 T11: 0.0724 T22: 0.0653 REMARK 3 T33: 0.0764 T12: 0.0020 REMARK 3 T13: -0.0114 T23: -0.0365 REMARK 3 L TENSOR REMARK 3 L11: 0.3929 L22: 0.1945 REMARK 3 L33: 1.4242 L12: -0.2535 REMARK 3 L13: 0.4870 L23: -0.4654 REMARK 3 S TENSOR REMARK 3 S11: -0.0801 S12: -0.0697 S13: -0.0335 REMARK 3 S21: 0.0608 S22: 0.0662 S23: -0.0009 REMARK 3 S31: -0.1822 S32: -0.1586 S33: 0.0140 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 34 B 268 REMARK 3 ORIGIN FOR THE GROUP (A): 36.7709 27.4988 78.9756 REMARK 3 T TENSOR REMARK 3 T11: 0.0435 T22: 0.0391 REMARK 3 T33: 0.0340 T12: -0.0042 REMARK 3 T13: -0.0119 T23: 0.0203 REMARK 3 L TENSOR REMARK 3 L11: 0.4400 L22: 0.5670 REMARK 3 L33: 0.6872 L12: -0.0382 REMARK 3 L13: -0.3328 L23: 0.3663 REMARK 3 S TENSOR REMARK 3 S11: -0.0496 S12: 0.0103 S13: -0.0345 REMARK 3 S21: 0.1310 S22: 0.0400 S23: 0.0077 REMARK 3 S31: 0.1112 S32: 0.0353 S33: 0.0096 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U REMARK 3 FACTORS. REMARK 4 REMARK 4 2XL9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1290044683. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31723 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.060 REMARK 200 RESOLUTION RANGE LOW (A) : 57.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.06 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.17 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.32000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS PH8.8, 22% PEG 8000, 0.5MM REMARK 280 ZNSO4 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.37500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.25500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.48500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.25500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.37500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.48500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -96.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 30 REMARK 465 ALA A 31 REMARK 465 GLU A 32 REMARK 465 THR A 33 REMARK 465 THR A 193 REMARK 465 ASP A 194 REMARK 465 LEU A 195 REMARK 465 ASN A 196 REMARK 465 MSE B 30 REMARK 465 ALA B 31 REMARK 465 GLU B 32 REMARK 465 THR B 33 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 34 CD OE1 OE2 REMARK 470 LYS A 45 CD CE NZ REMARK 470 ASP A 48 CG OD1 OD2 REMARK 470 LYS A 246 CE NZ REMARK 470 GLU A 253 CD OE1 OE2 REMARK 470 LYS A 263 CG CD CE NZ REMARK 470 GLU B 34 CG CD OE1 OE2 REMARK 470 LYS B 45 CE NZ REMARK 470 LYS B 68 CD CE NZ REMARK 470 GLU B 200 CD OE1 OE2 REMARK 470 LYS B 234 CG CD CE NZ REMARK 470 LYS B 246 CD CE NZ REMARK 470 LYS B 263 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 69 18.20 59.51 REMARK 500 LYS A 138 19.03 58.79 REMARK 500 ASN A 145 150.85 -48.13 REMARK 500 HIS A 146 -11.54 85.48 REMARK 500 ASN A 244 72.92 -158.22 REMARK 500 PRO B 55 -5.47 -58.53 REMARK 500 HIS B 146 -18.73 93.04 REMARK 500 ASN B 244 73.02 -164.22 REMARK 500 ASP B 262 108.15 -56.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 TAM A 1271 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1269 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 90 NE2 REMARK 620 2 GLU A 95 OE1 87.8 REMARK 620 3 HOH A2032 O 146.4 81.1 REMARK 620 4 HOH A2143 O 90.7 88.0 57.5 REMARK 620 5 HIS A 149 NE2 105.9 86.3 104.9 162.2 REMARK 620 6 HIS A 88 NE2 93.8 178.2 97.1 91.4 93.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1270 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 177 NE2 REMARK 620 2 TAM A1271 N 122.4 REMARK 620 3 ASP B 173 OD2 113.6 101.5 REMARK 620 4 HIS A 177 NE2 116.7 107.3 89.5 REMARK 620 5 ASP B 173 OD2 150.8 45.0 95.6 62.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1269 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 88 NE2 REMARK 620 2 HIS B 90 NE2 94.5 REMARK 620 3 HIS B 149 NE2 90.7 106.4 REMARK 620 4 HOH B2032 O 99.6 144.7 105.6 REMARK 620 5 GLU B 95 OE1 177.0 83.8 87.4 83.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1269 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1269 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1270 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TAM A 1271 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2XL7 RELATED DB: PDB REMARK 900 STRUCTURE AND METAL-LOADING OF A SOLUBLE PERIPLASM CUPRO-PROTEIN: REMARK 900 CU-CUCA-CLOSED (SEMET) REMARK 900 RELATED ID: 2XLG RELATED DB: PDB REMARK 900 STRUCTURE AND METAL-LOADING OF A SOLUBLE PERIPLASM PERIPLASM CUPRO- REMARK 900 PROTEIN: CU-CUCA-OPEN REMARK 900 RELATED ID: 2XLF RELATED DB: PDB REMARK 900 STRUCTURE AND METAL-LOADING OF A SOLUBLE PERIPLASM PERIPLASM CUPRO- REMARK 900 PROTEIN: APO-CUCA-CLOSED (SEMET) REMARK 900 RELATED ID: 2XLA RELATED DB: PDB REMARK 900 STRUCTURE AND METAL-LOADING OF A SOLUBLE PERIPLASM PERIPLASM CUPRO- REMARK 900 PROTEIN: CU-CUCA-CLOSED DBREF 2XL9 A 31 268 UNP P73600 P73600_SYNY3 31 268 DBREF 2XL9 B 31 268 UNP P73600 P73600_SYNY3 31 268 SEQADV 2XL9 MSE A 30 UNP P73600 EXPRESSION TAG SEQADV 2XL9 MSE B 30 UNP P73600 EXPRESSION TAG SEQRES 1 A 239 MSE ALA GLU THR GLU ILE HIS THR PHE ASP ASP ILE PRO SEQRES 2 A 239 MSE PRO LYS LEU ALA ASP PRO LEU LEU ILE TYR THR PRO SEQRES 3 A 239 ALA ASN GLU ILE PHE ASP ILE ALA SER CYS SER ALA LYS SEQRES 4 A 239 ASP ILE GLY PHE ALA ILE ALA HIS ALA GLN ILE PRO PRO SEQRES 5 A 239 GLY GLY GLY PRO MSE PRO HIS ILE HIS TYR PHE ILE ASN SEQRES 6 A 239 GLU TRP PHE TRP THR PRO GLU GLY GLY ILE GLU LEU PHE SEQRES 7 A 239 HIS SER THR LYS GLN TYR PRO ASN MSE ASP GLU LEU PRO SEQRES 8 A 239 VAL VAL GLY GLY ALA GLY ARG GLY ASP LEU TYR SER ILE SEQRES 9 A 239 GLN SER GLU PRO LYS GLN LEU ILE TYR SER PRO ASN HIS SEQRES 10 A 239 TYR MSE HIS GLY PHE VAL ASN PRO THR ASP LYS THR LEU SEQRES 11 A 239 PRO ILE VAL PHE VAL TRP MSE ARG ASN GLU VAL ALA PRO SEQRES 12 A 239 ASP PHE PRO TYR HIS ASP GLY GLY MSE ARG GLU TYR PHE SEQRES 13 A 239 GLN ALA VAL GLY PRO ARG ILE THR ASP LEU ASN ASN LEU SEQRES 14 A 239 PRO GLU LEU THR ASN ALA GLN ARG ALA ALA PHE ALA SER SEQRES 15 A 239 GLU ALA PRO LYS TYR GLY ILE ASN GLN SER SER TYR PHE SEQRES 16 A 239 MSE GLU TYR VAL ASN THR ILE SER ASP LYS LEU PRO ALA SEQRES 17 A 239 GLN ILE ALA LYS LEU LYS ASN ASP LYS ASP LEU GLU ARG SEQRES 18 A 239 MSE VAL GLU VAL ILE GLU ALA PHE ASN ARG GLY ASP LYS SEQRES 19 A 239 SER VAL THR CYS SER SEQRES 1 B 239 MSE ALA GLU THR GLU ILE HIS THR PHE ASP ASP ILE PRO SEQRES 2 B 239 MSE PRO LYS LEU ALA ASP PRO LEU LEU ILE TYR THR PRO SEQRES 3 B 239 ALA ASN GLU ILE PHE ASP ILE ALA SER CYS SER ALA LYS SEQRES 4 B 239 ASP ILE GLY PHE ALA ILE ALA HIS ALA GLN ILE PRO PRO SEQRES 5 B 239 GLY GLY GLY PRO MSE PRO HIS ILE HIS TYR PHE ILE ASN SEQRES 6 B 239 GLU TRP PHE TRP THR PRO GLU GLY GLY ILE GLU LEU PHE SEQRES 7 B 239 HIS SER THR LYS GLN TYR PRO ASN MSE ASP GLU LEU PRO SEQRES 8 B 239 VAL VAL GLY GLY ALA GLY ARG GLY ASP LEU TYR SER ILE SEQRES 9 B 239 GLN SER GLU PRO LYS GLN LEU ILE TYR SER PRO ASN HIS SEQRES 10 B 239 TYR MSE HIS GLY PHE VAL ASN PRO THR ASP LYS THR LEU SEQRES 11 B 239 PRO ILE VAL PHE VAL TRP MSE ARG ASN GLU VAL ALA PRO SEQRES 12 B 239 ASP PHE PRO TYR HIS ASP GLY GLY MSE ARG GLU TYR PHE SEQRES 13 B 239 GLN ALA VAL GLY PRO ARG ILE THR ASP LEU ASN ASN LEU SEQRES 14 B 239 PRO GLU LEU THR ASN ALA GLN ARG ALA ALA PHE ALA SER SEQRES 15 B 239 GLU ALA PRO LYS TYR GLY ILE ASN GLN SER SER TYR PHE SEQRES 16 B 239 MSE GLU TYR VAL ASN THR ILE SER ASP LYS LEU PRO ALA SEQRES 17 B 239 GLN ILE ALA LYS LEU LYS ASN ASP LYS ASP LEU GLU ARG SEQRES 18 B 239 MSE VAL GLU VAL ILE GLU ALA PHE ASN ARG GLY ASP LYS SEQRES 19 B 239 SER VAL THR CYS SER MODRES 2XL9 MSE A 43 MET SELENOMETHIONINE MODRES 2XL9 MSE A 86 MET SELENOMETHIONINE MODRES 2XL9 MSE A 116 MET SELENOMETHIONINE MODRES 2XL9 MSE A 148 MET SELENOMETHIONINE MODRES 2XL9 MSE A 166 MET SELENOMETHIONINE MODRES 2XL9 MSE A 181 MET SELENOMETHIONINE MODRES 2XL9 MSE A 225 MET SELENOMETHIONINE MODRES 2XL9 MSE A 251 MET SELENOMETHIONINE MODRES 2XL9 MSE B 43 MET SELENOMETHIONINE MODRES 2XL9 MSE B 86 MET SELENOMETHIONINE MODRES 2XL9 MSE B 116 MET SELENOMETHIONINE MODRES 2XL9 MSE B 148 MET SELENOMETHIONINE MODRES 2XL9 MSE B 166 MET SELENOMETHIONINE MODRES 2XL9 MSE B 181 MET SELENOMETHIONINE MODRES 2XL9 MSE B 225 MET SELENOMETHIONINE MODRES 2XL9 MSE B 251 MET SELENOMETHIONINE HET MSE A 43 8 HET MSE A 86 8 HET MSE A 116 8 HET MSE A 148 8 HET MSE A 166 8 HET MSE A 181 8 HET MSE A 225 8 HET MSE A 251 8 HET MSE B 43 8 HET MSE B 86 8 HET MSE B 116 8 HET MSE B 148 8 HET MSE B 166 8 HET MSE B 181 8 HET MSE B 225 8 HET MSE B 251 8 HET ZN A1269 1 HET ZN A1270 1 HET TAM A1271 8 HET ZN B1269 1 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION HETNAM TAM TRIS(HYDROXYETHYL)AMINOMETHANE FORMUL 1 MSE 16(C5 H11 N O2 SE) FORMUL 3 ZN 3(ZN 2+) FORMUL 5 TAM C7 H17 N O3 FORMUL 7 HOH *316(H2 O) HELIX 1 1 GLY A 180 GLY A 189 1 10 HELIX 2 2 THR A 202 GLU A 212 1 11 HELIX 3 3 ALA A 213 TYR A 216 5 4 HELIX 4 4 PRO A 236 LYS A 241 1 6 HELIX 5 5 ASN A 244 GLY A 261 1 18 HELIX 6 6 GLY B 180 GLY B 189 1 10 HELIX 7 7 THR B 202 GLU B 212 1 11 HELIX 8 8 ALA B 213 TYR B 216 5 4 HELIX 9 9 TYR B 223 GLU B 226 5 4 HELIX 10 10 PRO B 236 LEU B 242 1 7 HELIX 11 11 ASN B 244 ARG B 260 1 17 SHEET 1 AA 2 LEU A 50 THR A 54 0 SHEET 2 AA 2 GLU A 58 ALA A 67 -1 O GLU A 58 N THR A 54 SHEET 1 AB 6 LEU A 140 SER A 143 0 SHEET 2 AB 6 ILE A 93 TRP A 98 -1 O GLU A 95 N SER A 143 SHEET 3 AB 6 LEU A 159 ARG A 167 -1 O VAL A 162 N TRP A 98 SHEET 4 AB 6 ILE A 70 ILE A 79 -1 O GLY A 71 N ARG A 167 SHEET 5 AB 6 GLU A 58 ALA A 67 -1 O ILE A 59 N GLN A 78 SHEET 6 AB 6 THR A 266 CYS A 267 1 O THR A 266 N SER A 66 SHEET 1 AC 6 LEU A 140 SER A 143 0 SHEET 2 AC 6 ILE A 93 TRP A 98 -1 O GLU A 95 N SER A 143 SHEET 3 AC 6 LEU A 159 ARG A 167 -1 O VAL A 162 N TRP A 98 SHEET 4 AC 6 ILE A 70 ILE A 79 -1 O GLY A 71 N ARG A 167 SHEET 5 AC 6 GLU A 58 ALA A 67 -1 O ILE A 59 N GLN A 78 SHEET 6 AC 6 LEU A 50 THR A 54 -1 O LEU A 50 N ILE A 62 SHEET 1 AD 2 THR A 266 CYS A 267 0 SHEET 2 AD 2 GLU A 58 ALA A 67 1 O SER A 66 N THR A 266 SHEET 1 AE 6 ILE A 218 GLN A 220 0 SHEET 2 AE 6 HIS A 88 HIS A 90 -1 O ILE A 89 N ASN A 219 SHEET 3 AE 6 TYR A 147 VAL A 152 -1 O TYR A 147 N HIS A 90 SHEET 4 AE 6 GLU A 105 GLN A 112 -1 O GLU A 105 N VAL A 152 SHEET 5 AE 6 GLY A 128 GLN A 134 -1 O ASP A 129 N THR A 110 SHEET 6 AE 6 VAL A 228 SER A 232 1 N ASN A 229 O GLY A 128 SHEET 1 BA 2 LEU B 50 THR B 54 0 SHEET 2 BA 2 GLU B 58 SER B 66 -1 O GLU B 58 N THR B 54 SHEET 1 BB 6 LEU B 140 SER B 143 0 SHEET 2 BB 6 ILE B 93 TRP B 98 -1 O GLU B 95 N SER B 143 SHEET 3 BB 6 LEU B 159 ARG B 167 -1 O VAL B 162 N TRP B 98 SHEET 4 BB 6 GLY B 71 ILE B 79 -1 O GLY B 71 N ARG B 167 SHEET 5 BB 6 GLU B 58 SER B 66 -1 O ILE B 59 N GLN B 78 SHEET 6 BB 6 THR B 266 CYS B 267 1 O THR B 266 N SER B 66 SHEET 1 BC 6 LEU B 140 SER B 143 0 SHEET 2 BC 6 ILE B 93 TRP B 98 -1 O GLU B 95 N SER B 143 SHEET 3 BC 6 LEU B 159 ARG B 167 -1 O VAL B 162 N TRP B 98 SHEET 4 BC 6 GLY B 71 ILE B 79 -1 O GLY B 71 N ARG B 167 SHEET 5 BC 6 GLU B 58 SER B 66 -1 O ILE B 59 N GLN B 78 SHEET 6 BC 6 LEU B 50 THR B 54 -1 O LEU B 50 N ILE B 62 SHEET 1 BD 2 THR B 266 CYS B 267 0 SHEET 2 BD 2 GLU B 58 SER B 66 1 O SER B 66 N THR B 266 SHEET 1 BE 6 ILE B 218 GLN B 220 0 SHEET 2 BE 6 HIS B 88 HIS B 90 -1 O ILE B 89 N ASN B 219 SHEET 3 BE 6 TYR B 147 VAL B 152 -1 O TYR B 147 N HIS B 90 SHEET 4 BE 6 GLU B 105 GLN B 112 -1 O GLU B 105 N VAL B 152 SHEET 5 BE 6 GLY B 128 GLN B 134 -1 O ASP B 129 N THR B 110 SHEET 6 BE 6 VAL B 228 SER B 232 1 N ASN B 229 O GLY B 128 SSBOND 1 CYS A 65 CYS A 267 1555 1555 2.03 SSBOND 2 CYS B 65 CYS B 267 1555 1555 2.04 LINK C PRO A 42 N MSE A 43 1555 1555 1.33 LINK C MSE A 43 N PRO A 44 1555 1555 1.35 LINK C PRO A 85 N MSE A 86 1555 1555 1.34 LINK C MSE A 86 N PRO A 87 1555 1555 1.36 LINK C ASN A 115 N MSE A 116 1555 1555 1.34 LINK C MSE A 116 N ASP A 117 1555 1555 1.33 LINK C TYR A 147 N MSE A 148 1555 1555 1.33 LINK C MSE A 148 N HIS A 149 1555 1555 1.33 LINK C TRP A 165 N MSE A 166 1555 1555 1.33 LINK C MSE A 166 N ARG A 167 1555 1555 1.33 LINK C GLY A 180 N MSE A 181 1555 1555 1.34 LINK C MSE A 181 N ARG A 182 1555 1555 1.33 LINK C PHE A 224 N MSE A 225 1555 1555 1.33 LINK C MSE A 225 N GLU A 226 1555 1555 1.34 LINK C ARG A 250 N MSE A 251 1555 1555 1.33 LINK C MSE A 251 N VAL A 252 1555 1555 1.33 LINK ZN ZN A1269 NE2 HIS A 90 1555 1555 2.18 LINK ZN ZN A1269 OE1 GLU A 95 1555 1555 2.21 LINK ZN ZN A1269 O HOH A2032 1555 1555 2.60 LINK ZN ZN A1269 O HOH A2143 1555 1555 2.15 LINK ZN ZN A1269 NE2 HIS A 149 1555 1555 2.16 LINK ZN ZN A1269 NE2 HIS A 88 1555 1555 2.23 LINK ZN ZN A1270 NE2 HIS B 177 1555 2664 2.05 LINK ZN ZN A1270 N TAM A1271 1555 1555 2.16 LINK ZN ZN A1270 OD2 ASP B 173 1555 2664 1.78 LINK ZN ZN A1270 NE2 HIS A 177 1555 1555 2.17 LINK C PRO B 42 N MSE B 43 1555 1555 1.33 LINK C MSE B 43 N PRO B 44 1555 1555 1.35 LINK C PRO B 85 N MSE B 86 1555 1555 1.33 LINK C MSE B 86 N PRO B 87 1555 1555 1.35 LINK C ASN B 115 N MSE B 116 1555 1555 1.33 LINK C MSE B 116 N ASP B 117 1555 1555 1.33 LINK C TYR B 147 N MSE B 148 1555 1555 1.33 LINK C MSE B 148 N HIS B 149 1555 1555 1.33 LINK C TRP B 165 N MSE B 166 1555 1555 1.32 LINK C MSE B 166 N ARG B 167 1555 1555 1.33 LINK OD2 ASP B 173 ZN ZN A1270 1555 2665 1.78 LINK C GLY B 180 N MSE B 181 1555 1555 1.33 LINK C MSE B 181 N ARG B 182 1555 1555 1.34 LINK C PHE B 224 N MSE B 225 1555 1555 1.33 LINK C MSE B 225 N GLU B 226 1555 1555 1.33 LINK C ARG B 250 N MSE B 251 1555 1555 1.33 LINK C MSE B 251 N VAL B 252 1555 1555 1.33 LINK ZN ZN B1269 NE2 HIS B 88 1555 1555 2.18 LINK ZN ZN B1269 NE2 HIS B 90 1555 1555 2.13 LINK ZN ZN B1269 NE2 HIS B 149 1555 1555 2.07 LINK ZN ZN B1269 O HOH B2032 1555 1555 2.67 LINK ZN ZN B1269 OE1 GLU B 95 1555 1555 2.08 SITE 1 AC1 5 HIS B 88 HIS B 90 GLU B 95 HIS B 149 SITE 2 AC1 5 HOH B2032 SITE 1 AC2 6 HIS A 88 HIS A 90 GLU A 95 HIS A 149 SITE 2 AC2 6 HOH A2032 HOH A2143 SITE 1 AC3 4 HIS A 177 TAM A1271 ASP B 173 HIS B 177 SITE 1 AC4 5 PRO A 175 HIS A 177 ZN A1270 ASP B 173 SITE 2 AC4 5 HIS B 177 CRYST1 46.750 96.970 114.510 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021390 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010312 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008733 0.00000