HEADER HYDROLASE 28-JUL-10 2XMO TITLE THE CRYSTAL STRUCTURE OF LMO2642 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LMO2642 PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA MONOCYTOGENES; SOURCE 3 ORGANISM_TAXID: 1639; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) RIL; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PPROEXHTB KEYWDS PHOSPHODIESTERASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.H.JEONG,Y.G.KIM REVDAT 2 23-MAR-11 2XMO 1 JRNL REVDAT 1 23-FEB-11 2XMO 0 JRNL AUTH Y.G.KIM,J.H.JEONG,N.C.HA,K.J.KIM JRNL TITL STRUCTURAL AND FUNCTIONAL ANALYSIS OF THE LMO2642 CYCLIC JRNL TITL 2 NUCLEOTIDE PHOSPHODIESTERASE FROM LISTERIA MONOCYTOGENES. JRNL REF PROTEINS V. 79 1205 2011 JRNL REFN ISSN 0887-3585 JRNL PMID 21246635 JRNL DOI 10.1002/PROT.22954 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.0 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.1 REMARK 3 NUMBER OF REFLECTIONS : 93909 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.2118 REMARK 3 FREE R VALUE : 0.2425 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.7 REMARK 3 FREE R VALUE TEST SET COUNT : 4713 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6396 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 530 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.919 REMARK 3 B22 (A**2) : -3.441 REMARK 3 B33 (A**2) : -0.478 REMARK 3 B12 (A**2) : 0.000 REMARK 3 B13 (A**2) : -5.451 REMARK 3 B23 (A**2) : 0.000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005173 REMARK 3 BOND ANGLES (DEGREES) : 1.24721 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 35.6467 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2XMO COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-JUL-10. REMARK 100 THE PDBE ID CODE IS EBI-44848. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97957 REMARK 200 MONOCHROMATOR : DCM REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 93909 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.70 REMARK 200 RESOLUTION RANGE LOW (A) : 30.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.1 REMARK 200 DATA REDUNDANCY : 5.4 REMARK 200 R MERGE (I) : 0.09 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.80 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 63.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.2 REMARK 200 R MERGE FOR SHELL (I) : 0.39 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.50 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350, 0.4M SODIUM FORMATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 51.63350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ILE A 2 REMARK 465 ARG A 3 REMARK 465 PHE A 4 REMARK 465 PHE A 5 REMARK 465 LYS A 6 REMARK 465 ILE A 7 REMARK 465 VAL A 8 REMARK 465 THR A 9 REMARK 465 PRO A 10 REMARK 465 ILE A 11 REMARK 465 LEU A 12 REMARK 465 LEU A 13 REMARK 465 SER A 14 REMARK 465 ILE A 15 REMARK 465 SER A 16 REMARK 465 LEU A 17 REMARK 465 VAL A 18 REMARK 465 ALA A 19 REMARK 465 CYS A 20 REMARK 465 SER A 21 REMARK 465 SER A 22 REMARK 465 ALA A 23 REMARK 465 SER A 24 REMARK 465 GLY A 25 REMARK 465 LYS A 26 REMARK 465 THR A 27 REMARK 465 GLU A 28 REMARK 465 LYS A 29 REMARK 465 ILE A 30 REMARK 465 THR A 31 REMARK 465 ALA A 32 REMARK 465 ILE A 253 REMARK 465 GLN A 254 REMARK 465 MET B 1 REMARK 465 ILE B 2 REMARK 465 ARG B 3 REMARK 465 PHE B 4 REMARK 465 PHE B 5 REMARK 465 LYS B 6 REMARK 465 ILE B 7 REMARK 465 VAL B 8 REMARK 465 THR B 9 REMARK 465 PRO B 10 REMARK 465 ILE B 11 REMARK 465 LEU B 12 REMARK 465 LEU B 13 REMARK 465 SER B 14 REMARK 465 ILE B 15 REMARK 465 SER B 16 REMARK 465 LEU B 17 REMARK 465 VAL B 18 REMARK 465 ALA B 19 REMARK 465 CYS B 20 REMARK 465 SER B 21 REMARK 465 SER B 22 REMARK 465 ALA B 23 REMARK 465 SER B 24 REMARK 465 GLY B 25 REMARK 465 LYS B 26 REMARK 465 THR B 27 REMARK 465 GLU B 28 REMARK 465 LYS B 29 REMARK 465 ILE B 30 REMARK 465 THR B 31 REMARK 465 ALA B 32 REMARK 465 PRO B 33 REMARK 465 ILE B 253 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 72 CG CD CE NZ REMARK 470 LYS A 255 CG CD CE NZ REMARK 470 GLU B 35 CG CD OE1 OE2 REMARK 470 GLN B 254 CG CD OE1 NE2 REMARK 470 LYS B 255 CG CD CE NZ REMARK 470 PHE B 421 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 172 O HOH B 2087 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 70 59.35 26.70 REMARK 500 ASN A 105 47.64 -142.58 REMARK 500 LYS A 147 -123.42 64.41 REMARK 500 THR A 155 -165.81 -109.78 REMARK 500 PHE A 168 56.22 -106.57 REMARK 500 ASP A 251 5.93 -68.18 REMARK 500 HIS A 281 -48.29 70.42 REMARK 500 HIS A 283 -11.75 69.54 REMARK 500 ASN B 105 47.46 -145.80 REMARK 500 LYS B 147 -124.22 58.97 REMARK 500 THR B 155 -162.47 -114.33 REMARK 500 PHE B 168 54.32 -102.78 REMARK 500 LEU B 181 30.31 -94.11 REMARK 500 TYR B 201 -3.71 -142.37 REMARK 500 HIS B 281 -47.92 67.17 REMARK 500 HIS B 283 -12.96 70.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 555 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 283 NE2 REMARK 620 2 HIS A 49 NE2 98.3 REMARK 620 3 PO4 A1444 O2 94.0 91.5 REMARK 620 4 HOH A2284 O 87.7 173.7 86.2 REMARK 620 5 ASP A 47 OD2 87.6 104.5 163.6 77.5 REMARK 620 6 ASP A 101 OD2 166.5 93.2 92.6 81.0 82.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 555 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PO4 B1444 O4 REMARK 620 2 ASP B 47 OD2 165.0 REMARK 620 3 HOH B2240 O 82.7 82.2 REMARK 620 4 HIS B 283 NE2 97.0 83.0 89.6 REMARK 620 5 ASP B 101 OD2 92.2 85.5 81.5 166.3 REMARK 620 6 HIS B 49 NE2 93.6 101.5 175.6 93.3 96.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 556 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PO4 A1444 O1 REMARK 620 2 HOH A2284 O 83.7 REMARK 620 3 ASP A 101 OD2 92.0 80.7 REMARK 620 4 ASN A 134 OD1 88.0 171.2 96.7 REMARK 620 5 HIS A 243 NE2 174.0 101.9 87.0 86.2 REMARK 620 6 HIS A 281 ND1 96.3 88.4 165.6 95.4 85.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 556 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 134 OD1 REMARK 620 2 HIS B 243 NE2 83.6 REMARK 620 3 HIS B 281 ND1 94.6 87.0 REMARK 620 4 PO4 B1444 O1 85.6 169.0 95.7 REMARK 620 5 HOH B2240 O 167.1 109.2 87.2 81.6 REMARK 620 6 ASP B 101 OD2 96.6 87.7 167.1 91.8 83.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 600 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 122 OE1 REMARK 620 2 GLU A 122 OE2 47.4 REMARK 620 3 HOH A2031 O 94.1 85.8 REMARK 620 4 HOH A2080 O 120.6 74.3 91.6 REMARK 620 5 HOH A2111 O 157.2 151.0 100.0 77.1 REMARK 620 6 HOH A2104 O 86.4 133.7 102.1 149.0 73.2 REMARK 620 7 ASP A 167 O 87.6 89.6 171.9 80.8 80.9 85.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 600 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 167 O REMARK 620 2 HOH B2053 O 81.4 REMARK 620 3 GLU B 122 OE2 90.9 75.8 REMARK 620 4 HOH B2081 O 82.4 151.6 127.7 REMARK 620 5 GLU B 122 OE1 81.1 118.7 46.4 81.4 REMARK 620 6 HOH B2087 O 81.6 86.0 161.3 68.6 147.0 REMARK 620 7 HOH B2015 O 178.9 97.7 88.3 98.6 98.9 98.9 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 555 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 556 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 555 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE B 556 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A1444 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B1444 DBREF 2XMO A 1 443 UNP Q8Y432 Q8Y432_LISMO 1 443 DBREF 2XMO B 1 443 UNP Q8Y432 Q8Y432_LISMO 1 443 SEQADV 2XMO SER A 166 UNP Q8Y432 GLY 166 CONFLICT SEQADV 2XMO SER B 166 UNP Q8Y432 GLY 166 CONFLICT SEQRES 1 A 443 MET ILE ARG PHE PHE LYS ILE VAL THR PRO ILE LEU LEU SEQRES 2 A 443 SER ILE SER LEU VAL ALA CYS SER SER ALA SER GLY LYS SEQRES 3 A 443 THR GLU LYS ILE THR ALA PRO ILE GLU LYS ASP ARG ASN SEQRES 4 A 443 LEU SER MET VAL VAL THR THR ASP VAL HIS TYR PHE ALA SEQRES 5 A 443 PRO SER LEU THR ASP ASN GLY LYS ALA PHE GLU LYS TYR SEQRES 6 A 443 VAL ALA ALA GLY ASP GLY LYS GLN LEU ALA TYR SER ASP SEQRES 7 A 443 GLU ILE THR ASP ALA PHE LEU ALA ASP VAL GLU SER LYS SEQRES 8 A 443 LYS THR ASP VAL LEU ILE ILE SER GLY ASP LEU THR ASN SEQRES 9 A 443 ASN GLY GLU LYS THR SER HIS GLU GLU LEU ALA LYS LYS SEQRES 10 A 443 LEU THR GLN VAL GLU LYS ASN GLY THR GLN VAL PHE VAL SEQRES 11 A 443 VAL PRO GLY ASN HIS ASP ILE ASN ASN PRO TRP ALA ARG SEQRES 12 A 443 LYS PHE GLU LYS ASP LYS GLN LEU PRO THR ASP THR ILE SEQRES 13 A 443 SER PRO THR ASP PHE SER LYS ILE TYR SER ASP PHE GLY SEQRES 14 A 443 TYR GLU ASP ALA ILE SER SER ASP GLU PHE SER LEU SER SEQRES 15 A 443 TYR LEU ALA ALA PRO SER SER LYS VAL TRP LEU LEU MET SEQRES 16 A 443 LEU ASP THR ALA ILE TYR LYS THR ASN MET GLN GLN GLY SEQRES 17 A 443 ASN PRO THR THR GLU GLY GLY LEU THR ALA GLY THR LEU SEQRES 18 A 443 ASP TRP ILE LYS GLU SER SER ALA LEU ALA LYS LYS ASN SEQRES 19 A 443 GLY ALA LYS LEU ILE PRO VAL LEU HIS HIS ASN LEU THR SEQRES 20 A 443 ASP HIS ASN ASP VAL ILE GLN LYS GLY TYR THR ILE ASN SEQRES 21 A 443 TYR ASN GLN GLN VAL ILE ASP ALA LEU THR GLU GLY ALA SEQRES 22 A 443 MET ASP PHE SER LEU SER GLY HIS ILE HIS THR GLN ASN SEQRES 23 A 443 ILE ARG SER ALA LYS SER THR ASP GLY LYS GLU ILE THR SEQRES 24 A 443 ASP ILE VAL THR ASN ALA LEU SER VAL PHE PRO HIS LYS SEQRES 25 A 443 TYR GLY ASN ILE THR TYR SER ALA LYS ASN LYS ASN PHE SEQRES 26 A 443 THR TYR GLN SER GLN LYS LEU ASP MET GLU ALA TRP ALA SEQRES 27 A 443 LYS ALA GLN GLY SER THR ASP GLU ASN LEU LEU ASN PHE SEQRES 28 A 443 ASP GLN PHE ASP TYR GLU THR PHE TYR ASN SER GLY TYR SEQRES 29 A 443 ASP LYS ALA MET MET ASP LEU MET THR ASP GLU SER TYR SEQRES 30 A 443 ASP LYS TYR ASN GLN ALA ASP LYS GLU LYS MET ALA ASP SEQRES 31 A 443 THR MET GLY LEU ASN ASN MET TYR PHE PHE ALA GLY THR SEQRES 32 A 443 ALA PRO PRO LYS SER ASP GLY MET ALA LEU TRP ASP SER SEQRES 33 A 443 ALA PRO ASN SER PHE LEU LYS ASP TYR VAL LEU SER SER SEQRES 34 A 443 SER ASN PRO PRO LYS LYS SER ASN ASP TYR TYR VAL SER SEQRES 35 A 443 PRO SEQRES 1 B 443 MET ILE ARG PHE PHE LYS ILE VAL THR PRO ILE LEU LEU SEQRES 2 B 443 SER ILE SER LEU VAL ALA CYS SER SER ALA SER GLY LYS SEQRES 3 B 443 THR GLU LYS ILE THR ALA PRO ILE GLU LYS ASP ARG ASN SEQRES 4 B 443 LEU SER MET VAL VAL THR THR ASP VAL HIS TYR PHE ALA SEQRES 5 B 443 PRO SER LEU THR ASP ASN GLY LYS ALA PHE GLU LYS TYR SEQRES 6 B 443 VAL ALA ALA GLY ASP GLY LYS GLN LEU ALA TYR SER ASP SEQRES 7 B 443 GLU ILE THR ASP ALA PHE LEU ALA ASP VAL GLU SER LYS SEQRES 8 B 443 LYS THR ASP VAL LEU ILE ILE SER GLY ASP LEU THR ASN SEQRES 9 B 443 ASN GLY GLU LYS THR SER HIS GLU GLU LEU ALA LYS LYS SEQRES 10 B 443 LEU THR GLN VAL GLU LYS ASN GLY THR GLN VAL PHE VAL SEQRES 11 B 443 VAL PRO GLY ASN HIS ASP ILE ASN ASN PRO TRP ALA ARG SEQRES 12 B 443 LYS PHE GLU LYS ASP LYS GLN LEU PRO THR ASP THR ILE SEQRES 13 B 443 SER PRO THR ASP PHE SER LYS ILE TYR SER ASP PHE GLY SEQRES 14 B 443 TYR GLU ASP ALA ILE SER SER ASP GLU PHE SER LEU SER SEQRES 15 B 443 TYR LEU ALA ALA PRO SER SER LYS VAL TRP LEU LEU MET SEQRES 16 B 443 LEU ASP THR ALA ILE TYR LYS THR ASN MET GLN GLN GLY SEQRES 17 B 443 ASN PRO THR THR GLU GLY GLY LEU THR ALA GLY THR LEU SEQRES 18 B 443 ASP TRP ILE LYS GLU SER SER ALA LEU ALA LYS LYS ASN SEQRES 19 B 443 GLY ALA LYS LEU ILE PRO VAL LEU HIS HIS ASN LEU THR SEQRES 20 B 443 ASP HIS ASN ASP VAL ILE GLN LYS GLY TYR THR ILE ASN SEQRES 21 B 443 TYR ASN GLN GLN VAL ILE ASP ALA LEU THR GLU GLY ALA SEQRES 22 B 443 MET ASP PHE SER LEU SER GLY HIS ILE HIS THR GLN ASN SEQRES 23 B 443 ILE ARG SER ALA LYS SER THR ASP GLY LYS GLU ILE THR SEQRES 24 B 443 ASP ILE VAL THR ASN ALA LEU SER VAL PHE PRO HIS LYS SEQRES 25 B 443 TYR GLY ASN ILE THR TYR SER ALA LYS ASN LYS ASN PHE SEQRES 26 B 443 THR TYR GLN SER GLN LYS LEU ASP MET GLU ALA TRP ALA SEQRES 27 B 443 LYS ALA GLN GLY SER THR ASP GLU ASN LEU LEU ASN PHE SEQRES 28 B 443 ASP GLN PHE ASP TYR GLU THR PHE TYR ASN SER GLY TYR SEQRES 29 B 443 ASP LYS ALA MET MET ASP LEU MET THR ASP GLU SER TYR SEQRES 30 B 443 ASP LYS TYR ASN GLN ALA ASP LYS GLU LYS MET ALA ASP SEQRES 31 B 443 THR MET GLY LEU ASN ASN MET TYR PHE PHE ALA GLY THR SEQRES 32 B 443 ALA PRO PRO LYS SER ASP GLY MET ALA LEU TRP ASP SER SEQRES 33 B 443 ALA PRO ASN SER PHE LEU LYS ASP TYR VAL LEU SER SER SEQRES 34 B 443 SER ASN PRO PRO LYS LYS SER ASN ASP TYR TYR VAL SER SEQRES 35 B 443 PRO HET MN A 555 1 HET FE A 556 1 HET CA A 600 1 HET PO4 A1444 5 HET MN B 555 1 HET FE B 556 1 HET CA B 600 1 HET PO4 B1444 5 HETNAM MN MANGANESE (II) ION HETNAM FE FE (III) ION HETNAM CA CALCIUM ION HETNAM PO4 PHOSPHATE ION FORMUL 3 MN 2(MN 2+) FORMUL 4 FE 2(FE 3+) FORMUL 5 CA 2(CA 2+) FORMUL 6 PO4 2(O4 P 3-) FORMUL 7 HOH *530(H2 O) HELIX 1 1 ALA A 52 LEU A 55 5 4 HELIX 2 2 GLY A 59 ALA A 68 1 10 HELIX 3 3 GLN A 73 ALA A 75 5 3 HELIX 4 4 TYR A 76 LYS A 92 1 17 HELIX 5 5 GLU A 107 ASN A 124 1 18 HELIX 6 6 SER A 157 TYR A 165 1 9 HELIX 7 7 SER A 166 GLU A 171 1 6 HELIX 8 8 THR A 203 GLY A 208 1 6 HELIX 9 9 THR A 217 ASN A 234 1 18 HELIX 10 10 TYR A 261 GLY A 272 1 12 HELIX 11 11 ASP A 333 GLY A 342 1 10 HELIX 12 12 ASP A 345 ASN A 350 1 6 HELIX 13 13 ASN A 350 MET A 372 1 23 HELIX 14 14 ASN A 381 GLY A 402 1 22 HELIX 15 15 ASP A 409 ALA A 417 1 9 HELIX 16 16 SER A 420 SER A 429 1 10 HELIX 17 17 ALA B 52 LEU B 55 5 4 HELIX 18 18 GLY B 59 ALA B 68 1 10 HELIX 19 19 GLN B 73 ALA B 75 5 3 HELIX 20 20 TYR B 76 LYS B 92 1 17 HELIX 21 21 GLU B 107 ASN B 124 1 18 HELIX 22 22 SER B 157 TYR B 165 1 9 HELIX 23 23 SER B 166 GLU B 171 1 6 HELIX 24 24 THR B 203 GLY B 208 1 6 HELIX 25 25 THR B 217 ASN B 234 1 18 HELIX 26 26 TYR B 261 GLY B 272 1 12 HELIX 27 27 ASP B 333 GLN B 341 1 9 HELIX 28 28 ASP B 345 ASN B 350 1 6 HELIX 29 29 ASN B 350 ASP B 374 1 25 HELIX 30 30 GLU B 375 ASP B 378 5 4 HELIX 31 31 ASN B 381 GLY B 402 1 22 HELIX 32 32 ASP B 409 ALA B 417 1 9 HELIX 33 33 SER B 420 SER B 429 1 10 SHEET 1 AA 6 GLN A 127 VAL A 131 0 SHEET 2 AA 6 VAL A 95 SER A 99 1 O LEU A 96 N PHE A 129 SHEET 3 AA 6 LEU A 40 THR A 45 1 O SER A 41 N VAL A 95 SHEET 4 AA 6 LYS A 312 SER A 319 -1 O GLY A 314 N VAL A 44 SHEET 5 AA 6 ASN A 324 LYS A 331 -1 O ASN A 324 N SER A 319 SHEET 6 AA 6 TYR A 439 VAL A 441 -1 O TYR A 440 N TYR A 327 SHEET 1 AB 2 ARG A 143 GLU A 146 0 SHEET 2 AB 2 LYS A 149 PRO A 152 -1 O LYS A 149 N GLU A 146 SHEET 1 AC 4 SER A 175 SER A 176 0 SHEET 2 AC 4 TYR A 183 ALA A 185 -1 N LEU A 184 O SER A 175 SHEET 3 AC 4 VAL A 191 MET A 195 -1 O LEU A 193 N ALA A 185 SHEET 4 AC 4 LYS A 237 VAL A 241 1 O LYS A 237 N TRP A 192 SHEET 1 AD 3 PHE A 276 SER A 279 0 SHEET 2 AD 3 GLU A 297 VAL A 302 1 O THR A 299 N SER A 277 SHEET 3 AD 3 ASN A 286 LYS A 291 -1 O ASN A 286 N VAL A 302 SHEET 1 BA 6 GLN B 127 VAL B 131 0 SHEET 2 BA 6 VAL B 95 SER B 99 1 O LEU B 96 N PHE B 129 SHEET 3 BA 6 LEU B 40 THR B 45 1 O SER B 41 N VAL B 95 SHEET 4 BA 6 LYS B 312 SER B 319 -1 O GLY B 314 N VAL B 44 SHEET 5 BA 6 ASN B 324 LYS B 331 -1 O ASN B 324 N SER B 319 SHEET 6 BA 6 TYR B 439 VAL B 441 -1 O TYR B 440 N TYR B 327 SHEET 1 BB 2 ARG B 143 GLU B 146 0 SHEET 2 BB 2 LYS B 149 PRO B 152 -1 O LYS B 149 N GLU B 146 SHEET 1 BC 7 SER B 175 SER B 176 0 SHEET 2 BC 7 TYR B 183 ALA B 185 -1 N LEU B 184 O SER B 175 SHEET 3 BC 7 VAL B 191 MET B 195 -1 O LEU B 193 N ALA B 185 SHEET 4 BC 7 LYS B 237 LEU B 242 1 O LYS B 237 N TRP B 192 SHEET 5 BC 7 PHE B 276 SER B 279 1 O LEU B 278 N LEU B 242 SHEET 6 BC 7 GLU B 297 VAL B 302 1 O THR B 299 N SER B 277 SHEET 7 BC 7 ASN B 286 LYS B 291 -1 O ASN B 286 N VAL B 302 LINK MN MN A 555 NE2 HIS A 283 1555 1555 2.25 LINK MN MN A 555 NE2 HIS A 49 1555 1555 2.21 LINK MN MN A 555 O2 PO4 A1444 1555 1555 2.20 LINK MN MN A 555 O HOH A2284 1555 1555 2.11 LINK MN MN A 555 OD2 ASP A 47 1555 1555 2.26 LINK MN MN A 555 OD2 ASP A 101 1555 1555 2.29 LINK FE FE A 556 O1 PO4 A1444 1555 1555 2.21 LINK FE FE A 556 O HOH A2284 1555 1555 2.08 LINK FE FE A 556 OD2 ASP A 101 1555 1555 2.33 LINK FE FE A 556 OD1 ASN A 134 1555 1555 2.12 LINK FE FE A 556 NE2 HIS A 243 1555 1555 2.25 LINK FE FE A 556 ND1 HIS A 281 1555 1555 2.22 LINK CA CA A 600 O ASP A 167 1555 1555 2.49 LINK CA CA A 600 O HOH A2104 1555 1555 2.76 LINK CA CA A 600 OE1 GLU A 122 1555 1555 2.64 LINK CA CA A 600 OE2 GLU A 122 1555 1555 2.83 LINK CA CA A 600 O HOH A2031 1555 1555 2.66 LINK CA CA A 600 O HOH A2080 1555 1555 2.87 LINK CA CA A 600 O HOH A2111 1555 1555 2.74 LINK MN MN B 555 O4 PO4 B1444 1555 1555 2.25 LINK MN MN B 555 NE2 HIS B 49 1555 1555 2.24 LINK MN MN B 555 OD2 ASP B 101 1555 1555 2.30 LINK MN MN B 555 NE2 HIS B 283 1555 1555 2.26 LINK MN MN B 555 O HOH B2240 1555 1555 2.12 LINK MN MN B 555 OD2 ASP B 47 1555 1555 2.14 LINK FE FE B 556 OD2 ASP B 101 1555 1555 2.30 LINK FE FE B 556 O HOH B2240 1555 1555 2.03 LINK FE FE B 556 O1 PO4 B1444 1555 1555 2.26 LINK FE FE B 556 ND1 HIS B 281 1555 1555 2.31 LINK FE FE B 556 NE2 HIS B 243 1555 1555 2.20 LINK FE FE B 556 OD1 ASN B 134 1555 1555 2.14 LINK CA CA B 600 O HOH B2053 1555 1555 2.82 LINK CA CA B 600 OE2 GLU B 122 1555 1555 2.76 LINK CA CA B 600 O HOH B2081 1555 1555 2.93 LINK CA CA B 600 OE1 GLU B 122 1555 1555 2.85 LINK CA CA B 600 O HOH B2087 1555 1555 2.72 LINK CA CA B 600 O HOH B2015 1555 1555 2.76 LINK CA CA B 600 O ASP B 167 1555 1555 2.54 CISPEP 1 PHE A 309 PRO A 310 0 0.19 CISPEP 2 PHE B 309 PRO B 310 0 -0.34 SITE 1 AC1 7 ASP A 47 HIS A 49 ASP A 101 HIS A 283 SITE 2 AC1 7 FE A 556 PO4 A1444 HOH A2284 SITE 1 AC2 7 ASP A 101 ASN A 134 HIS A 243 HIS A 281 SITE 2 AC2 7 MN A 555 PO4 A1444 HOH A2284 SITE 1 AC3 6 GLU A 122 ASP A 167 HOH A2031 HOH A2080 SITE 2 AC3 6 HOH A2104 HOH A2111 SITE 1 AC4 7 ASP B 47 HIS B 49 ASP B 101 HIS B 283 SITE 2 AC4 7 FE B 556 PO4 B1444 HOH B2240 SITE 1 AC5 7 ASP B 101 ASN B 134 HIS B 243 HIS B 281 SITE 2 AC5 7 MN B 555 PO4 B1444 HOH B2240 SITE 1 AC6 6 GLU B 122 ASP B 167 HOH B2015 HOH B2053 SITE 2 AC6 6 HOH B2081 HOH B2087 SITE 1 AC7 14 HIS A 49 ASP A 101 ASN A 134 HIS A 135 SITE 2 AC7 14 TYR A 257 HIS A 281 HIS A 283 MN A 555 SITE 3 AC7 14 FE A 556 HOH A2284 HOH A2285 HOH A2286 SITE 4 AC7 14 HOH A2287 HOH A2288 SITE 1 AC8 12 HIS B 49 ASP B 101 ASN B 134 HIS B 135 SITE 2 AC8 12 TYR B 257 HIS B 281 HIS B 283 MN B 555 SITE 3 AC8 12 FE B 556 HOH B2240 HOH B2241 HOH B2242 CRYST1 62.963 103.267 73.765 90.00 102.80 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015882 0.000000 0.003608 0.00000 SCALE2 0.000000 0.009684 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013902 0.00000