HEADER RNA BINDING PROTEIN/RNA 05-AUG-10 2XNR TITLE STRUCTURAL INSIGHTS INTO CIS ELEMENT RECOGNITION OF NON- TITLE 2 POLYADENYLATED RNAS BY THE NAB3-RRM COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEAR POLYADENYLATED RNA-BINDING PROTEIN 3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RNA RECOGNITION MOTIF, RESIDUES 329-404; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 5'-R(*UP*UP*CP*UP*UP*AP*UP*UP*CP*UP*UP*A)-3'; COMPND 8 CHAIN: C; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28B; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 13 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 14 ORGANISM_TAXID: 4932 KEYWDS RNA BINDING PROTEIN-RNA COMPLEX, TRANSCRIPTION TERMINATION, RNA KEYWDS 2 RECOGNITION, RRM, RNA PROCESSING EXPDTA X-RAY DIFFRACTION AUTHOR B.M.LUNDE,M.HORNER,A.MEINHART REVDAT 4 20-DEC-23 2XNR 1 REMARK REVDAT 3 16-FEB-11 2XNR 1 JRNL REVDAT 2 15-SEP-10 2XNR 1 JRNL REVDAT 1 08-SEP-10 2XNR 0 JRNL AUTH B.M.LUNDE,M.HORNER,A.MEINHART JRNL TITL STRUCTURAL INSIGHTS INTO CIS ELEMENT RECOGNITION OF JRNL TITL 2 NON-POLYADENYLATED RNAS BY THE NAB3-RRM. JRNL REF NUCLEIC ACIDS RES. V. 39 337 2011 JRNL REFN ISSN 0305-1048 JRNL PMID 20805243 JRNL DOI 10.1093/NAR/GKQ751 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 9510 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 501 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 690 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2180 REMARK 3 BIN FREE R VALUE SET COUNT : 36 REMARK 3 BIN FREE R VALUE : 0.3110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 604 REMARK 3 NUCLEIC ACID ATOMS : 65 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 47 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.32000 REMARK 3 B22 (A**2) : 0.32000 REMARK 3 B33 (A**2) : -0.64000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.086 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.083 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.052 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.294 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 692 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 938 ; 1.252 ; 2.085 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 31 ;37.858 ;25.161 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 119 ;11.191 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ; 8.955 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 104 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 497 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 379 ; 0.695 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 607 ; 1.385 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 313 ; 2.163 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 331 ; 3.434 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 328 A 402 REMARK 3 ORIGIN FOR THE GROUP (A): 10.3471 7.9607 5.1212 REMARK 3 T TENSOR REMARK 3 T11: 0.0676 T22: 0.0564 REMARK 3 T33: 0.0521 T12: -0.0015 REMARK 3 T13: 0.0085 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 0.8918 L22: 2.9275 REMARK 3 L33: 2.0092 L12: -0.0851 REMARK 3 L13: -0.1525 L23: -0.0104 REMARK 3 S TENSOR REMARK 3 S11: 0.0263 S12: 0.0007 S13: -0.0291 REMARK 3 S21: 0.0216 S22: -0.0778 S23: -0.0372 REMARK 3 S31: -0.0090 S32: 0.0574 S33: 0.0515 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 0 C 4 REMARK 3 ORIGIN FOR THE GROUP (A): 19.2540 0.8904 8.9613 REMARK 3 T TENSOR REMARK 3 T11: 0.0855 T22: 0.0838 REMARK 3 T33: 0.0882 T12: 0.0334 REMARK 3 T13: 0.0144 T23: -0.0596 REMARK 3 L TENSOR REMARK 3 L11: 15.0938 L22: 7.7740 REMARK 3 L33: 28.4041 L12: -0.6189 REMARK 3 L13: -7.4358 L23: 2.9779 REMARK 3 S TENSOR REMARK 3 S11: -0.4745 S12: 0.6839 S13: -0.8360 REMARK 3 S21: 0.1759 S22: 0.2636 S23: -0.5354 REMARK 3 S31: 1.2672 S32: 0.7203 S33: 0.2109 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2XNR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-AUG-10. REMARK 100 THE DEPOSITION ID IS D_1290044978. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-MAR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978243 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9510 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.9100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.43000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.260 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2XNQ REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 85MM SODIUM ACETATE BUFFER PH 4.6, REMARK 280 170MM AMMONIUM ACETATE, 25.5% (W/V) PEG 4000, 15% (V/V) GLYCEROL, REMARK 280 PH 4.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.21000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 20.60500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 61.81500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 308 REMARK 465 GLY A 309 REMARK 465 SER A 310 REMARK 465 SER A 311 REMARK 465 HIS A 312 REMARK 465 HIS A 313 REMARK 465 HIS A 314 REMARK 465 HIS A 315 REMARK 465 HIS A 316 REMARK 465 HIS A 317 REMARK 465 SER A 318 REMARK 465 SER A 319 REMARK 465 GLY A 320 REMARK 465 LEU A 321 REMARK 465 VAL A 322 REMARK 465 PRO A 323 REMARK 465 ARG A 324 REMARK 465 GLY A 325 REMARK 465 SER A 326 REMARK 465 HIS A 327 REMARK 465 ALA A 403 REMARK 465 ARG A 404 REMARK 465 A C 5 REMARK 465 U C 6 REMARK 465 U C 7 REMARK 465 C C 8 REMARK 465 U C 9 REMARK 465 U C 10 REMARK 465 A C 11 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 395 CD1 REMARK 470 U C 0 O5' C5' C4' O4' C3' C2' O2' REMARK 470 U C 0 C1' N1 C2 O2 N3 C4 O4 REMARK 470 U C 0 C5 C6 REMARK 470 U C 4 C5' C4' O4' C3' O3' C2' O2' REMARK 470 U C 4 C1' N1 C2 O2 N3 C4 O4 REMARK 470 U C 4 C5 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 336 48.64 -145.49 REMARK 500 ASN A 364 -117.06 56.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2XNQ RELATED DB: PDB REMARK 900 STRUCTURAL INSIGHTS INTO CIS ELEMENT RECOGNITION OF NON- REMARK 900 POLYADENYLATED RNAS BY THE NAB3-RRM REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE OF NAB3-RRM DOMAIN WITH N-TERMINAL HIS-TAG AND REMARK 999 THROMBIN CLEAVAGE SITE DBREF 2XNR A 329 404 UNP P38996 NAB3_YEAST 329 404 DBREF 2XNR C 0 11 PDB 2XNR 2XNR 0 11 SEQADV 2XNR MET A 308 UNP P38996 EXPRESSION TAG SEQADV 2XNR GLY A 309 UNP P38996 EXPRESSION TAG SEQADV 2XNR SER A 310 UNP P38996 EXPRESSION TAG SEQADV 2XNR SER A 311 UNP P38996 EXPRESSION TAG SEQADV 2XNR HIS A 312 UNP P38996 EXPRESSION TAG SEQADV 2XNR HIS A 313 UNP P38996 EXPRESSION TAG SEQADV 2XNR HIS A 314 UNP P38996 EXPRESSION TAG SEQADV 2XNR HIS A 315 UNP P38996 EXPRESSION TAG SEQADV 2XNR HIS A 316 UNP P38996 EXPRESSION TAG SEQADV 2XNR HIS A 317 UNP P38996 EXPRESSION TAG SEQADV 2XNR SER A 318 UNP P38996 EXPRESSION TAG SEQADV 2XNR SER A 319 UNP P38996 EXPRESSION TAG SEQADV 2XNR GLY A 320 UNP P38996 EXPRESSION TAG SEQADV 2XNR LEU A 321 UNP P38996 EXPRESSION TAG SEQADV 2XNR VAL A 322 UNP P38996 EXPRESSION TAG SEQADV 2XNR PRO A 323 UNP P38996 EXPRESSION TAG SEQADV 2XNR ARG A 324 UNP P38996 EXPRESSION TAG SEQADV 2XNR GLY A 325 UNP P38996 EXPRESSION TAG SEQADV 2XNR SER A 326 UNP P38996 EXPRESSION TAG SEQADV 2XNR HIS A 327 UNP P38996 EXPRESSION TAG SEQADV 2XNR MET A 328 UNP P38996 EXPRESSION TAG SEQRES 1 A 97 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 97 LEU VAL PRO ARG GLY SER HIS MET LYS SER ARG LEU PHE SEQRES 3 A 97 ILE GLY ASN LEU PRO LEU LYS ASN VAL SER LYS GLU ASP SEQRES 4 A 97 LEU PHE ARG ILE PHE SER PRO TYR GLY HIS ILE MET GLN SEQRES 5 A 97 ILE ASN ILE LYS ASN ALA PHE GLY PHE ILE GLN PHE ASP SEQRES 6 A 97 ASN PRO GLN SER VAL ARG ASP ALA ILE GLU CYS GLU SER SEQRES 7 A 97 GLN GLU MET ASN PHE GLY LYS LYS LEU ILE LEU GLU VAL SEQRES 8 A 97 SER SER SER ASN ALA ARG SEQRES 1 C 12 U U C U U A U U C U U A HET ACT A1000 4 HET ACT A1001 4 HETNAM ACT ACETATE ION FORMUL 3 ACT 2(C2 H3 O2 1-) FORMUL 5 HOH *47(H2 O) HELIX 1 1 SER A 343 SER A 352 1 10 HELIX 2 2 PRO A 353 GLY A 355 5 3 HELIX 3 3 ASN A 373 SER A 385 1 13 SHEET 1 AA 4 ILE A 357 LYS A 363 0 SHEET 2 AA 4 PHE A 366 PHE A 371 -1 O PHE A 366 N LYS A 363 SHEET 3 AA 4 ARG A 331 ILE A 334 -1 O LEU A 332 N ILE A 369 SHEET 4 AA 4 LEU A 396 VAL A 398 -1 O GLU A 397 N PHE A 333 SITE 1 AC1 3 LYS A 329 ILE A 360 HOH A2047 SITE 1 AC2 4 LYS A 329 SER A 330 ARG A 331 GLN A 370 CRYST1 30.640 30.640 82.420 90.00 90.00 90.00 P 41 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.032637 0.000000 0.000000 0.00000 SCALE2 0.000000 0.032637 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012133 0.00000