HEADER LYASE/DNA 24-SEP-10 2XRZ TITLE X-RAY STRUCTURE OF ARCHAEAL CLASS II CPD PHOTOLYASE FROM TITLE 2 METHANOSARCINA MAZEI IN COMPLEX WITH INTACT CPD-LESION COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEOXYRIBODIPYRIMIDINE PHOTOLYASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 3-464; COMPND 5 SYNONYM: CLASS II CPD PHOTOLYASE; COMPND 6 EC: 4.1.99.3; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: CPD-COMPRISING OLIGONUCLEOTIDE; COMPND 11 CHAIN: C, E; COMPND 12 ENGINEERED: YES; COMPND 13 OTHER_DETAILS: OLIGONUCLEOTIDE WITH A SYNTHETIC FORMACETAL- LINKED COMPND 14 THYMINE DIMER; COMPND 15 MOL_ID: 3; COMPND 16 MOLECULE: COUNTERSTRAND-OLIGONUCLEOTIDE; COMPND 17 CHAIN: D, F; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOSARCINA MAZEI; SOURCE 3 ORGANISM_TAXID: 192952; SOURCE 4 STRAIN: GO1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: GOLD; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET28A; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 18 ORGANISM_TAXID: 32630 KEYWDS LYASE-DNA COMPLEX, PHOTOLYASE, DNA DAMAGE, DNA REPAIR, CLASS II, KEYWDS 2 INTACT CPD-LESION, PROTEIN-DNA COMPLEX, WATER CLUSTER EXPDTA X-RAY DIFFRACTION AUTHOR S.KIONTKE,Y.GEISSELBRECHT,R.POKORNY,T.CARELL,A.BATSCHAUER,L.O.ESSEN REVDAT 3 01-MAY-24 2XRZ 1 REMARK LINK REVDAT 2 16-NOV-11 2XRZ 1 JRNL REVDAT 1 14-SEP-11 2XRZ 0 JRNL AUTH S.KIONTKE,Y.GEISSELBRECHT,R.POKORNY,T.CARELL,A.BATSCHAUER, JRNL AUTH 2 L.O.ESSEN JRNL TITL CRYSTAL STRUCTURES OF AN ARCHAEAL CLASS II DNA PHOTOLYASE JRNL TITL 2 AND ITS COMPLEX WITH UV-DAMAGED DUPLEX DNA. JRNL REF EMBO J. V. 30 4437 2011 JRNL REFN ISSN 0261-4189 JRNL PMID 21892138 JRNL DOI 10.1038/EMBOJ.2011.313 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.48 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 70962 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : SHELLS REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.500 REMARK 3 FREE R VALUE TEST SET COUNT : 1094 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5166 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.2500 REMARK 3 BIN FREE R VALUE SET COUNT : 73 REMARK 3 BIN FREE R VALUE : 0.2930 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7125 REMARK 3 NUCLEIC ACID ATOMS : 1017 REMARK 3 HETEROGEN ATOMS : 153 REMARK 3 SOLVENT ATOMS : 635 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.40000 REMARK 3 B22 (A**2) : -1.36000 REMARK 3 B33 (A**2) : 0.95000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.191 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.164 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.127 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.385 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8681 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 5641 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11973 ; 1.363 ; 2.122 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13733 ; 0.952 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 900 ; 5.370 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 360 ;33.280 ;23.778 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1244 ;13.769 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 46 ;15.683 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1240 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8842 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1685 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4458 ; 0.460 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1782 ; 0.113 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7158 ; 0.887 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4221 ; 1.389 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4805 ; 2.177 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 2 A 186 6 REMARK 3 1 B 2 B 186 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 2474 ; 0.51 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 B (A): 2474 ; 0.51 ; 5.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 2474 ; 2.27 ; 10.00 REMARK 3 LOOSE THERMAL 1 B (A**2): 2474 ; 2.27 ; 10.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 221 A 461 6 REMARK 3 1 B 221 B 461 6 REMARK 3 2 A 998 A 998 4 REMARK 3 2 B 998 B 998 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 2 A (A): 71 ; 0.06 ; 0.50 REMARK 3 MEDIUM POSITIONAL 2 B (A): 71 ; 0.06 ; 0.50 REMARK 3 LOOSE POSITIONAL 2 A (A): 3309 ; 0.54 ; 5.00 REMARK 3 LOOSE POSITIONAL 2 B (A): 3309 ; 0.54 ; 5.00 REMARK 3 MEDIUM THERMAL 2 A (A**2): 71 ; 0.57 ; 2.00 REMARK 3 MEDIUM THERMAL 2 B (A**2): 71 ; 0.57 ; 2.00 REMARK 3 LOOSE THERMAL 2 A (A**2): 3309 ; 0.51 ; 10.00 REMARK 3 LOOSE THERMAL 2 B (A**2): 3309 ; 0.51 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 186 REMARK 3 ORIGIN FOR THE GROUP (A): -14.1158 27.0272 -20.2772 REMARK 3 T TENSOR REMARK 3 T11: 0.1043 T22: 0.1121 REMARK 3 T33: 0.2079 T12: -0.0406 REMARK 3 T13: 0.0031 T23: 0.1003 REMARK 3 L TENSOR REMARK 3 L11: 1.4222 L22: 1.5452 REMARK 3 L33: 1.4054 L12: 0.2789 REMARK 3 L13: 0.0991 L23: 0.0994 REMARK 3 S TENSOR REMARK 3 S11: -0.0838 S12: 0.3049 S13: 0.3588 REMARK 3 S21: -0.3728 S22: 0.1169 S23: -0.0011 REMARK 3 S31: -0.1859 S32: 0.0527 S33: -0.0331 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 198 A 998 REMARK 3 ORIGIN FOR THE GROUP (A): -21.6019 11.9319 -1.3713 REMARK 3 T TENSOR REMARK 3 T11: 0.0064 T22: 0.0723 REMARK 3 T33: 0.1107 T12: -0.0018 REMARK 3 T13: -0.0034 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 0.8857 L22: 1.8738 REMARK 3 L33: 0.9472 L12: 0.0881 REMARK 3 L13: -0.0983 L23: 0.3260 REMARK 3 S TENSOR REMARK 3 S11: -0.0150 S12: -0.0275 S13: 0.1785 REMARK 3 S21: 0.0523 S22: 0.0224 S23: 0.0981 REMARK 3 S31: 0.1126 S32: -0.0292 S33: -0.0074 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 187 REMARK 3 ORIGIN FOR THE GROUP (A): -35.0473 -28.4179 -10.1222 REMARK 3 T TENSOR REMARK 3 T11: 0.1171 T22: 0.0267 REMARK 3 T33: 0.0364 T12: -0.0528 REMARK 3 T13: -0.0080 T23: 0.0048 REMARK 3 L TENSOR REMARK 3 L11: 2.2958 L22: 3.1701 REMARK 3 L33: 1.5314 L12: 1.8424 REMARK 3 L13: -0.9630 L23: -0.9469 REMARK 3 S TENSOR REMARK 3 S11: -0.0522 S12: 0.1348 S13: -0.0645 REMARK 3 S21: -0.0432 S22: 0.1241 S23: 0.0434 REMARK 3 S31: 0.1496 S32: -0.1230 S33: -0.0719 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 221 B 998 REMARK 3 ORIGIN FOR THE GROUP (A): -27.9067 -12.5513 -30.5247 REMARK 3 T TENSOR REMARK 3 T11: 0.3391 T22: 0.3218 REMARK 3 T33: 0.0253 T12: -0.1642 REMARK 3 T13: -0.0099 T23: 0.0153 REMARK 3 L TENSOR REMARK 3 L11: 1.7355 L22: 3.0457 REMARK 3 L33: 1.5034 L12: 1.5522 REMARK 3 L13: -0.4121 L23: -0.8029 REMARK 3 S TENSOR REMARK 3 S11: -0.3968 S12: 0.5475 S13: 0.0545 REMARK 3 S21: -0.7430 S22: 0.5025 S23: 0.1339 REMARK 3 S31: 0.2584 S32: -0.2290 S33: -0.1057 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 3 C 14 REMARK 3 RESIDUE RANGE : D 1 D 14 REMARK 3 ORIGIN FOR THE GROUP (A): -2.5807 4.0510 10.6582 REMARK 3 T TENSOR REMARK 3 T11: 0.2723 T22: 0.3169 REMARK 3 T33: 0.2193 T12: 0.1659 REMARK 3 T13: -0.1650 T23: -0.1539 REMARK 3 L TENSOR REMARK 3 L11: 9.0282 L22: 6.4491 REMARK 3 L33: 7.8991 L12: -1.1770 REMARK 3 L13: -1.2785 L23: 1.6946 REMARK 3 S TENSOR REMARK 3 S11: -0.4731 S12: -1.1871 S13: 0.7789 REMARK 3 S21: 1.2138 S22: 0.7377 S23: -0.8988 REMARK 3 S31: 0.7500 S32: 0.8886 S33: -0.2645 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 4 E 14 REMARK 3 RESIDUE RANGE : F 1 F 13 REMARK 3 ORIGIN FOR THE GROUP (A): -9.8652 -15.9506 -42.1444 REMARK 3 T TENSOR REMARK 3 T11: 0.5756 T22: 0.5151 REMARK 3 T33: 0.1671 T12: 0.0254 REMARK 3 T13: 0.1591 T23: -0.1366 REMARK 3 L TENSOR REMARK 3 L11: 6.6912 L22: 4.4456 REMARK 3 L33: 8.6321 L12: -0.2110 REMARK 3 L13: -0.5653 L23: 1.0113 REMARK 3 S TENSOR REMARK 3 S11: 0.0565 S12: 0.9577 S13: -0.7076 REMARK 3 S21: -0.6892 S22: 0.0072 S23: -0.5987 REMARK 3 S31: 1.0209 S32: 0.7825 S33: -0.0637 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES WITH TLS ADDED. RESIDUES A187-A197 AND B188- REMARK 3 B220 ARE DISORDERED. REMARK 4 REMARK 4 2XRZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-SEP-10. REMARK 100 THE DEPOSITION ID IS D_1290045476. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAY-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.93400 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72130 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 29.480 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.69000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: STRUCTURAL DATA OF NATIVE M. MAZEI PHOTOLYASE. REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULPHATE, 0.1 M SODIUM REMARK 280 ACETATE PH 4.6, 10% (W/V) PEG 4000, 10% (V/V) GLYCEROL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.85000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 84.15000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 58.10000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 84.15000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.85000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 58.10000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, MET 377 TO THR REMARK 400 ENGINEERED RESIDUE IN CHAIN B, MET 377 TO THR REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -17 REMARK 465 GLY A -16 REMARK 465 SER A -15 REMARK 465 SER A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 SER A -7 REMARK 465 SER A -6 REMARK 465 GLY A -5 REMARK 465 LEU A -4 REMARK 465 VAL A -3 REMARK 465 PRO A -2 REMARK 465 ARG A -1 REMARK 465 GLY A 0 REMARK 465 SER A 1 REMARK 465 THR A 187 REMARK 465 PRO A 188 REMARK 465 GLU A 189 REMARK 465 LEU A 190 REMARK 465 SER A 191 REMARK 465 ALA A 192 REMARK 465 GLY A 193 REMARK 465 ALA A 194 REMARK 465 GLY A 195 REMARK 465 MET A 196 REMARK 465 VAL A 197 REMARK 465 ALA A 463 REMARK 465 LEU A 464 REMARK 465 MET B -17 REMARK 465 GLY B -16 REMARK 465 SER B -15 REMARK 465 SER B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 SER B -7 REMARK 465 SER B -6 REMARK 465 GLY B -5 REMARK 465 PRO B 188 REMARK 465 GLU B 189 REMARK 465 LEU B 190 REMARK 465 SER B 191 REMARK 465 ALA B 192 REMARK 465 GLY B 193 REMARK 465 ALA B 194 REMARK 465 GLY B 195 REMARK 465 MET B 196 REMARK 465 VAL B 197 REMARK 465 GLU B 198 REMARK 465 THR B 199 REMARK 465 LEU B 200 REMARK 465 SER B 201 REMARK 465 ASP B 202 REMARK 465 VAL B 203 REMARK 465 LEU B 204 REMARK 465 GLU B 205 REMARK 465 THR B 206 REMARK 465 GLY B 207 REMARK 465 VAL B 208 REMARK 465 LYS B 209 REMARK 465 ALA B 210 REMARK 465 LEU B 211 REMARK 465 LEU B 212 REMARK 465 PRO B 213 REMARK 465 GLU B 214 REMARK 465 ARG B 215 REMARK 465 ALA B 216 REMARK 465 LEU B 217 REMARK 465 LEU B 218 REMARK 465 LYS B 219 REMARK 465 ASN B 220 REMARK 465 ALA B 463 REMARK 465 LEU B 464 REMARK 465 DA C 1 REMARK 465 DT C 2 REMARK 465 DA C 15 REMARK 465 DA E 1 REMARK 465 DT E 2 REMARK 465 DC E 3 REMARK 465 DA E 15 REMARK 465 DT F 14 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 15 CG CD CE NZ REMARK 470 ASP A 18 CG OD1 OD2 REMARK 470 GLU A 46 CD OE1 OE2 REMARK 470 ARG A 103 CD NE CZ NH1 NH2 REMARK 470 LYS A 106 CG CD CE NZ REMARK 470 LYS A 219 CG CD CE NZ REMARK 470 LYS A 221 CG CD CE NZ REMARK 470 LYS A 455 CD CE NZ REMARK 470 LYS B 15 CG CD CE NZ REMARK 470 LEU B 62 CG CD1 CD2 REMARK 470 GLU B 63 CG CD OE1 OE2 REMARK 470 ARG B 94 CD NE CZ NH1 NH2 REMARK 470 LYS B 221 CG CD CE NZ REMARK 470 LYS B 235 CG CD CE NZ REMARK 470 ASP B 250 CG OD1 OD2 REMARK 470 LYS B 261 CG CD CE NZ REMARK 470 GLU B 289 CG CD OE1 OE2 REMARK 470 LYS B 296 CD CE NZ REMARK 470 LYS B 455 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 2130 O HOH B 2131 2.12 REMARK 500 OP1 DG D 12 O HOH D 2009 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 121 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 121 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG B 121 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 121 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 DG C 5 O4' - C1' - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 DG C 12 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC C 13 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DT D 1 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DC D 3 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 DA D 13 O4' - C1' - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 DT D 14 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DC E 6 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DG E 10 O4' - C1' - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 DC E 11 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DG E 12 C5' - C4' - O4' ANGL. DEV. = 7.8 DEGREES REMARK 500 DG E 12 O4' - C1' - N9 ANGL. DEV. = 4.0 DEGREES REMARK 500 DC F 5 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DG F 12 O4' - C1' - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 26 -63.24 -142.03 REMARK 500 ALA A 64 -144.81 -113.89 REMARK 500 LYS A 221 -3.20 89.80 REMARK 500 LEU A 303 -66.31 -94.87 REMARK 500 VAL A 436 -57.11 72.71 REMARK 500 TYR A 461 55.58 -118.31 REMARK 500 SER B 26 -63.00 -139.05 REMARK 500 ASP B 222 57.46 -157.26 REMARK 500 LEU B 303 -65.11 -98.12 REMARK 500 VAL B 436 -60.27 75.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2006 DISTANCE = 6.39 ANGSTROMS REMARK 525 HOH B2018 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH B2042 DISTANCE = 5.86 ANGSTROMS REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 [(1R,3R,4S,9R,10S,12R,15AS,15BR,18BR,18CS)-10-HYDROXY-15A, REMARK 600 15B-DIMETHYL-13,15,16,18-TETRAOXOHEXADECAHYDRO-8H-9, REMARK 600 12-EPOXY-1,4-METHANO-2,5,7-TRIOXA-12A,14,17, REMARK 600 18A-TETRAAZACYCLOHEXADECA[1,2,3, REMARK 600 4-DEF]BIPHENYLEN-3-YL]METHYL DIHYDROGEN PHOSPHATE (TT): REMARK 600 SYNTHETIC CPD-LESION WITH FORMACETAL LINKAGE REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 998 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1463 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1464 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1465 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1466 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1467 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1468 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1469 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1470 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD B 998 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 1463 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 1464 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2XRY RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF ARCHAEAL CLASS II CPD PHOTOLYASE FROM REMARK 900 METHANOSARCINA MAZEI DBREF 2XRZ A 3 464 UNP Q8PYK9 Q8PYK9_METMA 3 464 DBREF 2XRZ B 3 464 UNP Q8PYK9 Q8PYK9_METMA 3 464 DBREF 2XRZ C 1 15 PDB 2XRZ 2XRZ 1 15 DBREF 2XRZ D 1 14 PDB 2XRZ 2XRZ 1 14 DBREF 2XRZ E 1 15 PDB 2XRZ 2XRZ 1 15 DBREF 2XRZ F 1 14 PDB 2XRZ 2XRZ 1 14 SEQADV 2XRZ MET A -17 UNP Q8PYK9 EXPRESSION TAG SEQADV 2XRZ GLY A -16 UNP Q8PYK9 EXPRESSION TAG SEQADV 2XRZ SER A -15 UNP Q8PYK9 EXPRESSION TAG SEQADV 2XRZ SER A -14 UNP Q8PYK9 EXPRESSION TAG SEQADV 2XRZ HIS A -13 UNP Q8PYK9 EXPRESSION TAG SEQADV 2XRZ HIS A -12 UNP Q8PYK9 EXPRESSION TAG SEQADV 2XRZ HIS A -11 UNP Q8PYK9 EXPRESSION TAG SEQADV 2XRZ HIS A -10 UNP Q8PYK9 EXPRESSION TAG SEQADV 2XRZ HIS A -9 UNP Q8PYK9 EXPRESSION TAG SEQADV 2XRZ HIS A -8 UNP Q8PYK9 EXPRESSION TAG SEQADV 2XRZ SER A -7 UNP Q8PYK9 EXPRESSION TAG SEQADV 2XRZ SER A -6 UNP Q8PYK9 EXPRESSION TAG SEQADV 2XRZ GLY A -5 UNP Q8PYK9 EXPRESSION TAG SEQADV 2XRZ LEU A -4 UNP Q8PYK9 EXPRESSION TAG SEQADV 2XRZ VAL A -3 UNP Q8PYK9 EXPRESSION TAG SEQADV 2XRZ PRO A -2 UNP Q8PYK9 EXPRESSION TAG SEQADV 2XRZ ARG A -1 UNP Q8PYK9 EXPRESSION TAG SEQADV 2XRZ GLY A 0 UNP Q8PYK9 EXPRESSION TAG SEQADV 2XRZ SER A 1 UNP Q8PYK9 EXPRESSION TAG SEQADV 2XRZ HIS A 2 UNP Q8PYK9 EXPRESSION TAG SEQADV 2XRZ THR A 377 UNP Q8PYK9 MET 377 ENGINEERED MUTATION SEQADV 2XRZ MET B -17 UNP Q8PYK9 EXPRESSION TAG SEQADV 2XRZ GLY B -16 UNP Q8PYK9 EXPRESSION TAG SEQADV 2XRZ SER B -15 UNP Q8PYK9 EXPRESSION TAG SEQADV 2XRZ SER B -14 UNP Q8PYK9 EXPRESSION TAG SEQADV 2XRZ HIS B -13 UNP Q8PYK9 EXPRESSION TAG SEQADV 2XRZ HIS B -12 UNP Q8PYK9 EXPRESSION TAG SEQADV 2XRZ HIS B -11 UNP Q8PYK9 EXPRESSION TAG SEQADV 2XRZ HIS B -10 UNP Q8PYK9 EXPRESSION TAG SEQADV 2XRZ HIS B -9 UNP Q8PYK9 EXPRESSION TAG SEQADV 2XRZ HIS B -8 UNP Q8PYK9 EXPRESSION TAG SEQADV 2XRZ SER B -7 UNP Q8PYK9 EXPRESSION TAG SEQADV 2XRZ SER B -6 UNP Q8PYK9 EXPRESSION TAG SEQADV 2XRZ GLY B -5 UNP Q8PYK9 EXPRESSION TAG SEQADV 2XRZ LEU B -4 UNP Q8PYK9 EXPRESSION TAG SEQADV 2XRZ VAL B -3 UNP Q8PYK9 EXPRESSION TAG SEQADV 2XRZ PRO B -2 UNP Q8PYK9 EXPRESSION TAG SEQADV 2XRZ ARG B -1 UNP Q8PYK9 EXPRESSION TAG SEQADV 2XRZ GLY B 0 UNP Q8PYK9 EXPRESSION TAG SEQADV 2XRZ SER B 1 UNP Q8PYK9 EXPRESSION TAG SEQADV 2XRZ HIS B 2 UNP Q8PYK9 EXPRESSION TAG SEQADV 2XRZ THR B 377 UNP Q8PYK9 MET 377 ENGINEERED MUTATION SEQRES 1 A 482 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 482 LEU VAL PRO ARG GLY SER HIS MET ASN PRO LYS ARG ILE SEQRES 3 A 482 ARG ALA LEU LYS SER GLY LYS GLN GLY ASP GLY PRO VAL SEQRES 4 A 482 VAL TYR TRP MET SER ARG ASP GLN ARG ALA GLU ASP ASN SEQRES 5 A 482 TRP ALA LEU LEU PHE SER ARG ALA ILE ALA LYS GLU ALA SEQRES 6 A 482 ASN VAL PRO VAL VAL VAL VAL PHE CYS LEU THR ASP GLU SEQRES 7 A 482 PHE LEU GLU ALA GLY ILE ARG GLN TYR GLU PHE MET LEU SEQRES 8 A 482 LYS GLY LEU GLN GLU LEU GLU VAL SER LEU SER ARG LYS SEQRES 9 A 482 LYS ILE PRO SER PHE PHE LEU ARG GLY ASP PRO GLY GLU SEQRES 10 A 482 LYS ILE SER ARG PHE VAL LYS ASP TYR ASN ALA GLY THR SEQRES 11 A 482 LEU VAL THR ASP PHE SER PRO LEU ARG ILE LYS ASN GLN SEQRES 12 A 482 TRP ILE GLU LYS VAL ILE SER GLY ILE SER ILE PRO PHE SEQRES 13 A 482 PHE GLU VAL ASP ALA HIS ASN VAL VAL PRO CYS TRP GLU SEQRES 14 A 482 ALA SER GLN LYS HIS GLU TYR ALA ALA HIS THR PHE ARG SEQRES 15 A 482 PRO LYS LEU TYR ALA LEU LEU PRO GLU PHE LEU GLU GLU SEQRES 16 A 482 PHE PRO GLU LEU GLU PRO ASN SER VAL THR PRO GLU LEU SEQRES 17 A 482 SER ALA GLY ALA GLY MET VAL GLU THR LEU SER ASP VAL SEQRES 18 A 482 LEU GLU THR GLY VAL LYS ALA LEU LEU PRO GLU ARG ALA SEQRES 19 A 482 LEU LEU LYS ASN LYS ASP PRO LEU PHE GLU PRO TRP HIS SEQRES 20 A 482 PHE GLU PRO GLY GLU LYS ALA ALA LYS LYS VAL MET GLU SEQRES 21 A 482 SER PHE ILE ALA ASP ARG LEU ASP SER TYR GLY ALA LEU SEQRES 22 A 482 ARG ASN ASP PRO THR LYS ASN MET LEU SER ASN LEU SER SEQRES 23 A 482 PRO TYR LEU HIS PHE GLY GLN ILE SER SER GLN ARG VAL SEQRES 24 A 482 VAL LEU GLU VAL GLU LYS ALA GLU SER ASN PRO GLY SER SEQRES 25 A 482 LYS LYS ALA PHE LEU ASP GLU ILE LEU ILE TRP LYS GLU SEQRES 26 A 482 ILE SER ASP ASN PHE CYS TYR TYR ASN PRO GLY TYR ASP SEQRES 27 A 482 GLY PHE GLU SER PHE PRO SER TRP ALA LYS GLU SER LEU SEQRES 28 A 482 ASN ALA HIS ARG ASN ASP VAL ARG SER HIS ILE TYR THR SEQRES 29 A 482 LEU GLU GLU PHE GLU ALA GLY LYS THR HIS ASP PRO LEU SEQRES 30 A 482 TRP ASN ALA SER GLN MET GLU LEU LEU SER THR GLY LYS SEQRES 31 A 482 MET HIS GLY TYR THR ARG MET TYR TRP ALA LYS LYS ILE SEQRES 32 A 482 LEU GLU TRP SER GLU SER PRO GLU LYS ALA LEU GLU ILE SEQRES 33 A 482 ALA ILE CYS LEU ASN ASP ARG TYR GLU LEU ASP GLY ARG SEQRES 34 A 482 ASP PRO ASN GLY TYR ALA GLY ILE ALA TRP SER ILE GLY SEQRES 35 A 482 GLY VAL HIS ASP ARG ALA TRP GLY GLU ARG GLU VAL THR SEQRES 36 A 482 GLY LYS ILE ARG TYR MET SER TYR GLU GLY CYS LYS ARG SEQRES 37 A 482 LYS PHE ASP VAL LYS LEU TYR ILE GLU LYS TYR SER ALA SEQRES 38 A 482 LEU SEQRES 1 B 482 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 482 LEU VAL PRO ARG GLY SER HIS MET ASN PRO LYS ARG ILE SEQRES 3 B 482 ARG ALA LEU LYS SER GLY LYS GLN GLY ASP GLY PRO VAL SEQRES 4 B 482 VAL TYR TRP MET SER ARG ASP GLN ARG ALA GLU ASP ASN SEQRES 5 B 482 TRP ALA LEU LEU PHE SER ARG ALA ILE ALA LYS GLU ALA SEQRES 6 B 482 ASN VAL PRO VAL VAL VAL VAL PHE CYS LEU THR ASP GLU SEQRES 7 B 482 PHE LEU GLU ALA GLY ILE ARG GLN TYR GLU PHE MET LEU SEQRES 8 B 482 LYS GLY LEU GLN GLU LEU GLU VAL SER LEU SER ARG LYS SEQRES 9 B 482 LYS ILE PRO SER PHE PHE LEU ARG GLY ASP PRO GLY GLU SEQRES 10 B 482 LYS ILE SER ARG PHE VAL LYS ASP TYR ASN ALA GLY THR SEQRES 11 B 482 LEU VAL THR ASP PHE SER PRO LEU ARG ILE LYS ASN GLN SEQRES 12 B 482 TRP ILE GLU LYS VAL ILE SER GLY ILE SER ILE PRO PHE SEQRES 13 B 482 PHE GLU VAL ASP ALA HIS ASN VAL VAL PRO CYS TRP GLU SEQRES 14 B 482 ALA SER GLN LYS HIS GLU TYR ALA ALA HIS THR PHE ARG SEQRES 15 B 482 PRO LYS LEU TYR ALA LEU LEU PRO GLU PHE LEU GLU GLU SEQRES 16 B 482 PHE PRO GLU LEU GLU PRO ASN SER VAL THR PRO GLU LEU SEQRES 17 B 482 SER ALA GLY ALA GLY MET VAL GLU THR LEU SER ASP VAL SEQRES 18 B 482 LEU GLU THR GLY VAL LYS ALA LEU LEU PRO GLU ARG ALA SEQRES 19 B 482 LEU LEU LYS ASN LYS ASP PRO LEU PHE GLU PRO TRP HIS SEQRES 20 B 482 PHE GLU PRO GLY GLU LYS ALA ALA LYS LYS VAL MET GLU SEQRES 21 B 482 SER PHE ILE ALA ASP ARG LEU ASP SER TYR GLY ALA LEU SEQRES 22 B 482 ARG ASN ASP PRO THR LYS ASN MET LEU SER ASN LEU SER SEQRES 23 B 482 PRO TYR LEU HIS PHE GLY GLN ILE SER SER GLN ARG VAL SEQRES 24 B 482 VAL LEU GLU VAL GLU LYS ALA GLU SER ASN PRO GLY SER SEQRES 25 B 482 LYS LYS ALA PHE LEU ASP GLU ILE LEU ILE TRP LYS GLU SEQRES 26 B 482 ILE SER ASP ASN PHE CYS TYR TYR ASN PRO GLY TYR ASP SEQRES 27 B 482 GLY PHE GLU SER PHE PRO SER TRP ALA LYS GLU SER LEU SEQRES 28 B 482 ASN ALA HIS ARG ASN ASP VAL ARG SER HIS ILE TYR THR SEQRES 29 B 482 LEU GLU GLU PHE GLU ALA GLY LYS THR HIS ASP PRO LEU SEQRES 30 B 482 TRP ASN ALA SER GLN MET GLU LEU LEU SER THR GLY LYS SEQRES 31 B 482 MET HIS GLY TYR THR ARG MET TYR TRP ALA LYS LYS ILE SEQRES 32 B 482 LEU GLU TRP SER GLU SER PRO GLU LYS ALA LEU GLU ILE SEQRES 33 B 482 ALA ILE CYS LEU ASN ASP ARG TYR GLU LEU ASP GLY ARG SEQRES 34 B 482 ASP PRO ASN GLY TYR ALA GLY ILE ALA TRP SER ILE GLY SEQRES 35 B 482 GLY VAL HIS ASP ARG ALA TRP GLY GLU ARG GLU VAL THR SEQRES 36 B 482 GLY LYS ILE ARG TYR MET SER TYR GLU GLY CYS LYS ARG SEQRES 37 B 482 LYS PHE ASP VAL LYS LEU TYR ILE GLU LYS TYR SER ALA SEQRES 38 B 482 LEU SEQRES 1 C 14 DA DT DC DG DG DC TT DC DG DC DG DC DA SEQRES 2 C 14 DA SEQRES 1 D 14 DT DG DC DG DC DG DA DA DG DC DC DG DA SEQRES 2 D 14 DT SEQRES 1 E 14 DA DT DC DG DG DC TT DC DG DC DG DC DA SEQRES 2 E 14 DA SEQRES 1 F 14 DT DG DC DG DC DG DA DA DG DC DC DG DA SEQRES 2 F 14 DT HET TT C 7 38 HET TT E 7 38 HET FAD A 998 53 HET SO4 A1463 5 HET GOL A1464 6 HET GOL A1465 6 HET GOL A1466 6 HET ACT A1467 4 HET ACT A1468 4 HET ACT A1469 4 HET ACT A1470 4 HET FAD B 998 53 HET ACT B1463 4 HET ACT B1464 4 HETNAM TT [(1R,3R,4S,9R,10S,12R,15AS,15BR,18BR,18CS)-10-HYDROXY- HETNAM 2 TT 15A,15B-DIMETHYL-13,15,16,18-TETRAOXOHEXADECAHYDRO-8H- HETNAM 3 TT 9,12-EPOXY-1,4-METHANO-2,5,7-TRIOXA-12A,14,17,18A- HETNAM 4 TT TETRAAZACYCLOHEXADECA[1,2,3,4-DEF]BIPHENYLEN-3- HETNAM 5 TT YL]METHYL DIHYDROGEN PHOSPHATE HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM ACT ACETATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 TT 2(C21 H29 N4 O13 P) FORMUL 7 FAD 2(C27 H33 N9 O15 P2) FORMUL 8 SO4 O4 S 2- FORMUL 9 GOL 3(C3 H8 O3) FORMUL 12 ACT 6(C2 H3 O2 1-) FORMUL 19 HOH *635(H2 O) HELIX 1 1 PRO A 5 ARG A 7 5 3 HELIX 2 2 TRP A 35 ALA A 47 1 13 HELIX 3 3 GLU A 60 GLU A 63 5 4 HELIX 4 4 ILE A 66 LYS A 86 1 21 HELIX 5 5 PRO A 97 TYR A 108 1 12 HELIX 6 6 ARG A 121 SER A 132 1 12 HELIX 7 7 CYS A 149 ALA A 152 1 4 HELIX 8 8 ALA A 160 PHE A 174 1 15 HELIX 9 9 LEU A 200 LEU A 211 1 12 HELIX 10 10 LEU A 212 GLU A 214 5 3 HELIX 11 11 GLU A 234 ARG A 248 1 15 HELIX 12 12 LEU A 249 SER A 251 5 3 HELIX 13 13 TYR A 252 ARG A 256 1 5 HELIX 14 14 LEU A 267 PHE A 273 1 7 HELIX 15 15 SER A 278 LYS A 287 1 10 HELIX 16 16 PRO A 292 TYR A 315 1 24 HELIX 17 17 PHE A 322 SER A 324 5 3 HELIX 18 18 SER A 327 HIS A 336 1 10 HELIX 19 19 LEU A 347 ALA A 352 1 6 HELIX 20 20 PRO A 358 THR A 370 1 13 HELIX 21 21 GLY A 375 TRP A 388 1 14 HELIX 22 22 PRO A 392 TYR A 406 1 15 HELIX 23 23 PRO A 413 GLY A 424 1 12 HELIX 24 24 TYR A 445 ARG A 450 1 6 HELIX 25 25 VAL A 454 TYR A 461 1 8 HELIX 26 26 PRO B 5 ARG B 7 5 3 HELIX 27 27 TRP B 35 ALA B 47 1 13 HELIX 28 28 ASP B 59 ALA B 64 1 6 HELIX 29 29 ILE B 66 LYS B 86 1 21 HELIX 30 30 PRO B 97 TYR B 108 1 12 HELIX 31 31 ARG B 121 GLY B 133 1 13 HELIX 32 32 CYS B 149 ALA B 152 1 4 HELIX 33 33 ALA B 160 PHE B 174 1 15 HELIX 34 34 GLU B 234 ARG B 248 1 15 HELIX 35 35 SER B 251 ARG B 256 1 6 HELIX 36 36 LEU B 267 PHE B 273 1 7 HELIX 37 37 SER B 278 LYS B 287 1 10 HELIX 38 38 PRO B 292 TYR B 315 1 24 HELIX 39 39 PHE B 322 SER B 324 5 3 HELIX 40 40 SER B 327 ALA B 335 1 9 HELIX 41 41 LEU B 347 ALA B 352 1 6 HELIX 42 42 PRO B 358 THR B 370 1 13 HELIX 43 43 GLY B 375 TRP B 388 1 14 HELIX 44 44 PRO B 392 TYR B 406 1 15 HELIX 45 45 PRO B 413 GLY B 424 1 12 HELIX 46 46 TYR B 445 ARG B 450 1 6 HELIX 47 47 VAL B 454 TYR B 461 1 8 SHEET 1 AA 6 ILE A 8 LYS A 12 0 SHEET 2 AA 6 PHE A 138 VAL A 141 -1 O PHE A 138 N LEU A 11 SHEET 3 AA 6 THR A 112 THR A 115 1 O LEU A 113 N PHE A 139 SHEET 4 AA 6 VAL A 21 TRP A 24 1 O VAL A 22 N VAL A 114 SHEET 5 AA 6 VAL A 51 LEU A 57 1 O VAL A 52 N TYR A 23 SHEET 6 AA 6 SER A 90 ARG A 94 1 O PHE A 91 N PHE A 55 SHEET 1 BA 6 ILE B 8 LYS B 12 0 SHEET 2 BA 6 PHE B 138 VAL B 141 -1 O PHE B 138 N LEU B 11 SHEET 3 BA 6 THR B 112 THR B 115 1 O LEU B 113 N PHE B 139 SHEET 4 BA 6 VAL B 21 TRP B 24 1 O VAL B 22 N VAL B 114 SHEET 5 BA 6 VAL B 51 LEU B 57 1 O VAL B 52 N TYR B 23 SHEET 6 BA 6 SER B 90 ARG B 94 1 O PHE B 91 N PHE B 55 LINK O3' DC C 6 P TT C 7 1555 1555 1.61 LINK O3R TT C 7 P DC C 9 1555 1555 1.61 LINK O3' DC E 6 P TT E 7 1555 1555 1.60 LINK O3R TT E 7 P DC E 9 1555 1555 1.62 SITE 1 AC1 31 TYR A 252 LEU A 264 SER A 265 ASN A 266 SITE 2 AC1 31 LEU A 267 SER A 268 LEU A 271 PHE A 298 SITE 3 AC1 31 GLU A 301 ILE A 302 TRP A 305 LYS A 306 SITE 4 AC1 31 SER A 309 LYS A 372 GLY A 375 ARG A 378 SITE 5 AC1 31 MET A 379 ALA A 382 ASN A 403 ASP A 409 SITE 6 AC1 31 GLY A 410 ASN A 414 GLY A 415 SER A 422 SITE 7 AC1 31 HOH A2268 HOH A2270 HOH A2296 HOH A2325 SITE 8 AC1 31 HOH A2326 TT C 7 HOH C2005 SITE 1 AC2 9 ILE A 66 ARG A 67 ARG A 215 ALA A 216 SITE 2 AC2 9 PHE A 225 ARG A 405 HOH A2048 HOH A2155 SITE 3 AC2 9 HOH A2156 SITE 1 AC3 8 PHE A 230 ASN A 266 GLU A 366 THR A 370 SITE 2 AC3 8 LYS A 372 HOH A2200 HOH A2327 HOH A2328 SITE 1 AC4 7 TYR A 158 SER A 327 TRP A 328 HOH A2329 SITE 2 AC4 7 HOH A2330 DC D 10 DC D 11 SITE 1 AC5 6 SER A 26 CYS A 56 GLU A 60 TRP A 126 SITE 2 AC5 6 HOH A2332 HOH A2333 SITE 1 AC6 4 ASP A 320 HOH A2226 GLU B 390 LYS B 394 SITE 1 AC7 7 LYS A 383 LYS A 384 GLU A 387 THR A 437 SITE 2 AC7 7 ARG A 441 TYR A 442 MET A 443 SITE 1 AC8 4 GLN A 77 GLU A 80 SER A 201 HOH A2055 SITE 1 AC9 6 ARG A 256 ALA A 297 ASP A 300 GLU A 301 SITE 2 AC9 6 TRP A 305 TT C 7 SITE 1 BC1 30 TYR B 252 LEU B 264 SER B 265 ASN B 266 SITE 2 BC1 30 LEU B 267 SER B 268 LEU B 271 PHE B 298 SITE 3 BC1 30 GLU B 301 ILE B 302 TRP B 305 LYS B 306 SITE 4 BC1 30 SER B 309 LYS B 372 GLY B 375 ARG B 378 SITE 5 BC1 30 ALA B 382 ASN B 403 ASP B 409 GLY B 410 SITE 6 BC1 30 ASN B 414 GLY B 415 SER B 422 HOH B2066 SITE 7 BC1 30 HOH B2211 HOH B2234 HOH B2262 HOH B2263 SITE 8 BC1 30 HOH B2264 TT E 7 SITE 1 BC2 7 GLN B 16 ILE B 43 ALA B 47 VAL B 49 SITE 2 BC2 7 GLY B 111 THR B 112 HOH B2265 SITE 1 BC3 6 LYS B 383 GLU B 387 THR B 437 ARG B 441 SITE 2 BC3 6 TYR B 442 MET B 443 CRYST1 71.700 116.200 168.300 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013947 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008606 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005942 0.00000