HEADER RNA BINDING PROTEIN/RNA 24-SEP-10 2XS5 TITLE CRYSTAL STRUCTURE OF THE RRM DOMAIN OF MOUSE DELETED IN AZOOSPERMIA- TITLE 2 LIKE IN COMPLEX WITH MVH RNA, UGUUC COMPND MOL_ID: 1; COMPND 2 MOLECULE: DELETED IN AZOOSPERMIA-LIKE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 32-117; COMPND 5 SYNONYM: DAZ-LIKE AUTOSOMAL, DELETED IN AZOOSPERMIA-LIKE 1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 5'-R(*UP*GP*UP*UP*CP)-3'; COMPND 9 CHAIN: C, D; COMPND 10 SYNONYM: MVH 3'-UTR; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA-2 PLYSS; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-SUMO-28A; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 13 ORGANISM_COMMON: MOUSE; SOURCE 14 ORGANISM_TAXID: 10090 KEYWDS RNA BINDING PROTEIN-RNA COMPLEX, TRANSLATION REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR H.T.JENKINS,T.A.EDWARDS REVDAT 4 20-DEC-23 2XS5 1 REMARK REVDAT 3 23-NOV-11 2XS5 1 JRNL REVDAT 2 02-NOV-11 2XS5 1 JRNL REVDAT 1 05-OCT-11 2XS5 0 JRNL AUTH H.T.JENKINS,T.A.EDWARDS JRNL TITL KINKED BETA-STRANDS MEDIATE HIGH-AFFINITY RECOGNITION OF JRNL TITL 2 MRNA TARGETS BY THE GERM-CELL REGULATOR DAZL JRNL REF PROC.NATL.ACAD.SCI.USA V. 108 18266 2011 JRNL REFN ISSN 0027-8424 JRNL PMID 22021443 JRNL DOI 10.1073/PNAS.1105211108 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.07 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 28134 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1500 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2026 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.32 REMARK 3 BIN R VALUE (WORKING SET) : 0.2810 REMARK 3 BIN FREE R VALUE SET COUNT : 97 REMARK 3 BIN FREE R VALUE : 0.3210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1303 REMARK 3 NUCLEIC ACID ATOMS : 184 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 239 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.79000 REMARK 3 B22 (A**2) : -1.27000 REMARK 3 B33 (A**2) : -0.52000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.090 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.092 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.066 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.234 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1601 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2200 ; 1.511 ; 2.105 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 187 ; 5.404 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 61 ;34.114 ;22.787 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 270 ;13.542 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;10.480 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 253 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1131 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 628 ; 0.200 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1079 ; 0.309 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 172 ; 0.151 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 44 ; 0.154 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 33 ; 0.186 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 847 ; 0.906 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1388 ; 1.412 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 754 ; 2.314 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 800 ; 3.526 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 35 A 50 REMARK 3 ORIGIN FOR THE GROUP (A): 17.7698 8.2324 15.0124 REMARK 3 T TENSOR REMARK 3 T11: 0.0047 T22: 0.0373 REMARK 3 T33: 0.0443 T12: 0.0020 REMARK 3 T13: -0.0025 T23: 0.0066 REMARK 3 L TENSOR REMARK 3 L11: 3.4825 L22: 3.2062 REMARK 3 L33: 3.0636 L12: 1.3406 REMARK 3 L13: -0.4596 L23: -0.2103 REMARK 3 S TENSOR REMARK 3 S11: 0.0504 S12: -0.0571 S13: 0.0551 REMARK 3 S21: -0.0673 S22: -0.0432 S23: 0.1222 REMARK 3 S31: -0.0628 S32: -0.0196 S33: -0.0071 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 51 A 78 REMARK 3 ORIGIN FOR THE GROUP (A): 12.7617 4.6497 9.2360 REMARK 3 T TENSOR REMARK 3 T11: 0.0122 T22: 0.0464 REMARK 3 T33: 0.0610 T12: -0.0054 REMARK 3 T13: 0.0081 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 0.2396 L22: 3.1369 REMARK 3 L33: 2.9844 L12: 0.2449 REMARK 3 L13: -0.5182 L23: -1.5999 REMARK 3 S TENSOR REMARK 3 S11: -0.0391 S12: 0.0343 S13: -0.0622 REMARK 3 S21: 0.0325 S22: 0.0557 S23: 0.1544 REMARK 3 S31: 0.0222 S32: -0.1566 S33: -0.0167 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 79 A 97 REMARK 3 ORIGIN FOR THE GROUP (A): 19.1127 11.5777 11.2211 REMARK 3 T TENSOR REMARK 3 T11: 0.1141 T22: 0.1015 REMARK 3 T33: 0.0954 T12: -0.0107 REMARK 3 T13: 0.0058 T23: 0.0015 REMARK 3 L TENSOR REMARK 3 L11: 0.4142 L22: 1.2016 REMARK 3 L33: 1.6855 L12: -0.3160 REMARK 3 L13: -0.7992 L23: 0.4505 REMARK 3 S TENSOR REMARK 3 S11: 0.0357 S12: -0.0275 S13: -0.0173 REMARK 3 S21: -0.0589 S22: -0.0015 S23: -0.0736 REMARK 3 S31: -0.1551 S32: 0.0519 S33: -0.0343 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 98 A 117 REMARK 3 ORIGIN FOR THE GROUP (A): 12.4543 12.4329 16.8512 REMARK 3 T TENSOR REMARK 3 T11: 0.0520 T22: 0.0586 REMARK 3 T33: 0.0743 T12: -0.0197 REMARK 3 T13: 0.0082 T23: 0.0308 REMARK 3 L TENSOR REMARK 3 L11: 3.9558 L22: 1.2661 REMARK 3 L33: 2.2759 L12: 0.7400 REMARK 3 L13: -0.4182 L23: 0.5320 REMARK 3 S TENSOR REMARK 3 S11: -0.0520 S12: -0.0646 S13: -0.0071 REMARK 3 S21: 0.0190 S22: 0.0761 S23: 0.2500 REMARK 3 S31: -0.0052 S32: -0.1624 S33: -0.0241 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 34 B 61 REMARK 3 ORIGIN FOR THE GROUP (A): 13.5051 -13.7955 7.3108 REMARK 3 T TENSOR REMARK 3 T11: 0.0101 T22: 0.0202 REMARK 3 T33: 0.0292 T12: 0.0075 REMARK 3 T13: -0.0062 T23: -0.0064 REMARK 3 L TENSOR REMARK 3 L11: 1.6029 L22: 2.3116 REMARK 3 L33: 2.0396 L12: -0.2594 REMARK 3 L13: -0.0313 L23: -0.3854 REMARK 3 S TENSOR REMARK 3 S11: -0.0423 S12: -0.0305 S13: 0.0620 REMARK 3 S21: 0.0427 S22: 0.0083 S23: 0.1838 REMARK 3 S31: -0.0339 S32: -0.1537 S33: 0.0340 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 62 B 77 REMARK 3 ORIGIN FOR THE GROUP (A): 15.3638 -9.1300 8.0016 REMARK 3 T TENSOR REMARK 3 T11: 0.0931 T22: 0.0718 REMARK 3 T33: 0.0923 T12: 0.0094 REMARK 3 T13: 0.0119 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.1254 L22: 4.8302 REMARK 3 L33: 2.4461 L12: 0.1033 REMARK 3 L13: 0.0222 L23: -3.3538 REMARK 3 S TENSOR REMARK 3 S11: -0.0407 S12: -0.0480 S13: 0.0551 REMARK 3 S21: 0.0498 S22: 0.0886 S23: 0.0463 REMARK 3 S31: -0.0854 S32: -0.1136 S33: -0.0479 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 78 B 99 REMARK 3 ORIGIN FOR THE GROUP (A): 17.6981 -17.8984 7.1639 REMARK 3 T TENSOR REMARK 3 T11: 0.0875 T22: 0.0912 REMARK 3 T33: 0.0929 T12: 0.0142 REMARK 3 T13: 0.0032 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 0.4650 L22: 1.0026 REMARK 3 L33: 1.2459 L12: 0.4734 REMARK 3 L13: 0.3497 L23: -0.0812 REMARK 3 S TENSOR REMARK 3 S11: -0.0018 S12: -0.0366 S13: 0.0669 REMARK 3 S21: 0.0262 S22: 0.0340 S23: -0.0103 REMARK 3 S31: 0.1050 S32: -0.0217 S33: -0.0322 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 100 B 117 REMARK 3 ORIGIN FOR THE GROUP (A): 11.6258 -17.8454 1.8883 REMARK 3 T TENSOR REMARK 3 T11: 0.0315 T22: 0.0492 REMARK 3 T33: 0.0632 T12: 0.0128 REMARK 3 T13: -0.0081 T23: 0.0045 REMARK 3 L TENSOR REMARK 3 L11: 7.6545 L22: 1.9159 REMARK 3 L33: 2.1063 L12: 0.2599 REMARK 3 L13: -0.5180 L23: 1.0141 REMARK 3 S TENSOR REMARK 3 S11: 0.0495 S12: 0.1180 S13: -0.0440 REMARK 3 S21: -0.0529 S22: -0.0914 S23: 0.3120 REMARK 3 S31: -0.0369 S32: -0.3022 S33: 0.0418 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 5 REMARK 3 ORIGIN FOR THE GROUP (A): 17.5026 2.8554 21.7172 REMARK 3 T TENSOR REMARK 3 T11: 0.0718 T22: 0.0804 REMARK 3 T33: 0.0841 T12: -0.0083 REMARK 3 T13: 0.0033 T23: 0.0220 REMARK 3 L TENSOR REMARK 3 L11: 1.9686 L22: 6.5547 REMARK 3 L33: 2.5523 L12: -2.1171 REMARK 3 L13: -1.2562 L23: 1.9150 REMARK 3 S TENSOR REMARK 3 S11: -0.0408 S12: -0.1913 S13: -0.2184 REMARK 3 S21: 0.4831 S22: -0.1485 S23: 0.1617 REMARK 3 S31: 0.1771 S32: 0.0531 S33: 0.1894 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 5 REMARK 3 ORIGIN FOR THE GROUP (A): 18.4451 -8.9254 -2.4760 REMARK 3 T TENSOR REMARK 3 T11: 0.0906 T22: 0.0678 REMARK 3 T33: 0.0967 T12: 0.0081 REMARK 3 T13: 0.0172 T23: 0.0159 REMARK 3 L TENSOR REMARK 3 L11: 2.3055 L22: 2.3589 REMARK 3 L33: 2.3034 L12: 0.3395 REMARK 3 L13: 1.0318 L23: 1.1895 REMARK 3 S TENSOR REMARK 3 S11: 0.0049 S12: 0.1350 S13: 0.2227 REMARK 3 S21: -0.4415 S22: -0.0378 S23: 0.0038 REMARK 3 S31: -0.1330 S32: 0.0518 S33: 0.0329 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2XS5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-SEP-10. REMARK 100 THE DEPOSITION ID IS D_1290045508. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : KIRKPATRICK BAEZ BIMORPH MIRROR REMARK 200 PAIR FOR HORIZONTAL AND VERTICAL REMARK 200 FOCUSSING REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29634 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 27.070 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 6.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.76000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2XS2 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MAGNESIUM ACETATE, 18% (W/V) PEG REMARK 280 3350 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 37.80250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.76900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.80250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.76900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 31 REMARK 465 LEU A 32 REMARK 465 PRO A 33 REMARK 465 GLU A 34 REMARK 465 SER B 31 REMARK 465 LEU B 32 REMARK 465 PRO B 33 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 117 CA C O CB CG CD OE1 REMARK 470 GLN A 117 NE2 REMARK 470 GLU B 34 CG CD OE1 OE2 REMARK 470 LYS B 106 CG CD CE NZ REMARK 470 GLN B 117 CA C O CB CG CD OE1 REMARK 470 GLN B 117 NE2 REMARK 470 U D 1 O5' C5' C4' O4' C3' C2' O2' REMARK 470 U D 1 C1' N1 C2 O2 N3 C4 O4 REMARK 470 U D 1 C5 C6 REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2027 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH B2035 DISTANCE = 6.61 ANGSTROMS REMARK 525 HOH B2050 DISTANCE = 5.92 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 1118 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2XS2 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE RRM DOMAIN OF MOUSE DELETED IN AZOOSPERMIA- REMARK 900 LIKE IN COMPLEX WITH RNA, UUGUUCUU REMARK 900 RELATED ID: 2XSF RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE RRM DOMAIN OF MOUSE DELETED IN AZOOSPERMIA- REMARK 900 LIKE REMARK 900 RELATED ID: 2XS7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE RRM DOMAIN OF MOUSE DELETED IN AZOOSPERMIA- REMARK 900 LIKE IN COMPLEX WITH SYCP3 RNA, UUGUUU DBREF 2XS5 A 32 117 UNP Q64368 DAZL_MOUSE 32 117 DBREF 2XS5 B 32 117 UNP Q64368 DAZL_MOUSE 32 117 DBREF 2XS5 C 1 5 PDB 2XS5 2XS5 1 5 DBREF 2XS5 D 1 5 PDB 2XS5 2XS5 1 5 SEQADV 2XS5 SER A 31 UNP Q64368 EXPRESSION TAG SEQADV 2XS5 SER B 31 UNP Q64368 EXPRESSION TAG SEQRES 1 A 87 SER LEU PRO GLU GLY LYS ILE MET PRO ASN THR VAL PHE SEQRES 2 A 87 VAL GLY GLY ILE ASP VAL ARG MET ASP GLU THR GLU ILE SEQRES 3 A 87 ARG SER PHE PHE ALA ARG TYR GLY SER VAL LYS GLU VAL SEQRES 4 A 87 LYS ILE ILE THR ASP ARG THR GLY VAL SER LYS GLY TYR SEQRES 5 A 87 GLY PHE VAL SER PHE TYR ASN ASP VAL ASP VAL GLN LYS SEQRES 6 A 87 ILE VAL GLU SER GLN ILE ASN PHE HIS GLY LYS LYS LEU SEQRES 7 A 87 LYS LEU GLY PRO ALA ILE ARG LYS GLN SEQRES 1 B 87 SER LEU PRO GLU GLY LYS ILE MET PRO ASN THR VAL PHE SEQRES 2 B 87 VAL GLY GLY ILE ASP VAL ARG MET ASP GLU THR GLU ILE SEQRES 3 B 87 ARG SER PHE PHE ALA ARG TYR GLY SER VAL LYS GLU VAL SEQRES 4 B 87 LYS ILE ILE THR ASP ARG THR GLY VAL SER LYS GLY TYR SEQRES 5 B 87 GLY PHE VAL SER PHE TYR ASN ASP VAL ASP VAL GLN LYS SEQRES 6 B 87 ILE VAL GLU SER GLN ILE ASN PHE HIS GLY LYS LYS LEU SEQRES 7 B 87 LYS LEU GLY PRO ALA ILE ARG LYS GLN SEQRES 1 C 5 U G U U C SEQRES 1 D 5 U G U U C HET PEG B1118 7 HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 5 PEG C4 H10 O3 FORMUL 6 HOH *239(H2 O) HELIX 1 1 ASP A 52 ALA A 61 1 10 HELIX 2 2 ASP A 92 VAL A 97 1 6 HELIX 3 3 ASP B 52 ALA B 61 1 10 HELIX 4 4 ARG B 62 GLY B 64 5 3 HELIX 5 5 ASP B 92 VAL B 97 1 6 SHEET 1 AA 4 VAL A 66 THR A 73 0 SHEET 2 AA 4 SER A 79 PHE A 87 -1 N LYS A 80 O ILE A 72 SHEET 3 AA 4 LYS A 36 GLY A 45 -1 O ASN A 40 N PHE A 87 SHEET 4 AA 4 LYS A 109 ARG A 115 -1 O LYS A 109 N GLY A 45 SHEET 1 AB 2 ASN A 102 PHE A 103 0 SHEET 2 AB 2 LYS A 106 LYS A 107 -1 O LYS A 106 N PHE A 103 SHEET 1 BA 4 VAL B 66 THR B 73 0 SHEET 2 BA 4 SER B 79 PHE B 87 -1 N LYS B 80 O ILE B 72 SHEET 3 BA 4 LYS B 36 GLY B 45 -1 O ASN B 40 N PHE B 87 SHEET 4 BA 4 LYS B 109 ARG B 115 -1 O LYS B 109 N GLY B 45 SHEET 1 BB 2 ASN B 102 PHE B 103 0 SHEET 2 BB 2 LYS B 106 LYS B 107 -1 O LYS B 106 N PHE B 103 SITE 1 AC1 5 ARG A 75 LYS A 95 GLU A 98 TYR B 88 SITE 2 AC1 5 C C 5 CRYST1 75.605 77.538 37.695 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013227 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012897 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026529 0.00000 MTRIX1 1 0.998700 -0.050530 -0.000232 -0.07941 1 MTRIX2 1 -0.050520 -0.998700 0.007928 -5.12200 1 MTRIX3 1 -0.000632 -0.007906 -1.000000 18.76000 1