HEADER OXIDOREDUCTASE 28-SEP-10 2XSE TITLE THE STRUCTURAL BASIS FOR RECOGNITION OF J-BASE CONTAINING TITLE 2 DNA BY A NOVEL DNA-BINDING DOMAIN IN JBP1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMINE DIOXYGENASE JBP1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DNA-BINDING DOMAIN, RESIDUES 392-561; COMPND 5 SYNONYM: J-BINDING PROTEIN 1; COMPND 6 EC: 1.14.11.6; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEISHMANIA TARENTOLAE; SOURCE 3 ORGANISM_TAXID: 5689; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: LIC KEYWDS OXIDOREDUCTASE, DNA-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR T.HEIDEBRECHT,E.CHRISTODOULOU,M.J.CHALMERS,S.JAN,B.TER RIETE, AUTHOR 2 R.K.GROVER,R.P.JOOSTEN,D.LITTLER,H.VANLUENEN,P.R.GRIFFIN, AUTHOR 3 P.WENTWORTH,P.BORST,A.PERRAKIS REVDAT 2 03-AUG-11 2XSE 1 JRNL REMARK HETSYN VERSN REVDAT 1 30-MAR-11 2XSE 0 JRNL AUTH T.HEIDEBRECHT,E.CHRISTODOULOU,M.J.CHALMERS,S.JAN,B.TER RIET, JRNL AUTH 2 R.K.GROVER,R.P.JOOSTEN,D.LITTLER,H.VAN LUENEN,P.R.GRIFFIN, JRNL AUTH 3 P.WENTWORTH,P.BORST,A.PERRAKIS JRNL TITL THE STRUCTURAL BASIS FOR RECOGNITION OF BASE J CONTAINING JRNL TITL 2 DNA BY A NOVEL DNA BINDING DOMAIN IN JBP1. JRNL REF NUCLEIC ACIDS RES. V. 39 5715 2011 JRNL REFN ISSN 0305-1048 JRNL PMID 21415010 JRNL DOI 10.1093/NAR/GKR125 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0081 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.32 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 99.58 REMARK 3 NUMBER OF REFLECTIONS : 19541 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.17553 REMARK 3 R VALUE (WORKING SET) : 0.17420 REMARK 3 FREE R VALUE : 0.20038 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.1 REMARK 3 FREE R VALUE TEST SET COUNT : 1055 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.899 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.948 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1350 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.02 REMARK 3 BIN R VALUE (WORKING SET) : 0.235 REMARK 3 BIN FREE R VALUE SET COUNT : 83 REMARK 3 BIN FREE R VALUE : 0.230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1374 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 164 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.111 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.66 REMARK 3 B22 (A**2) : 0.66 REMARK 3 B33 (A**2) : -0.99 REMARK 3 B12 (A**2) : 0.33 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.115 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.109 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.073 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.741 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1420 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1031 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1913 ; 1.255 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2511 ; 0.888 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 176 ; 4.386 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 68 ;34.578 ;23.824 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 288 ;13.070 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;16.458 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 199 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1556 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 290 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 494 ; 0.258 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 953 ; 0.170 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 649 ; 0.174 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 620 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 21 ; 0.118 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 19 ; 0.349 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 25 ; 0.195 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 2 ; 0.020 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1420 ; 0.058 ; 0.200 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1031 ; 0.016 ; 0.200 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1906 ; 0.073 ; 0.300 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 395 A 426 REMARK 3 RESIDUE RANGE : A 467 A 495 REMARK 3 RESIDUE RANGE : A 549 A 561 REMARK 3 ORIGIN FOR THE GROUP (A): -13.9927 51.6852 37.5633 REMARK 3 T TENSOR REMARK 3 T11: 0.0397 T22: 0.0324 REMARK 3 T33: 0.0283 T12: 0.0100 REMARK 3 T13: -0.0227 T23: -0.0242 REMARK 3 L TENSOR REMARK 3 L11: 1.6651 L22: 1.0240 REMARK 3 L33: 1.3323 L12: 0.0467 REMARK 3 L13: 0.5239 L23: 0.0857 REMARK 3 S TENSOR REMARK 3 S11: -0.0095 S12: -0.0279 S13: 0.0879 REMARK 3 S21: 0.0350 S22: -0.0704 S23: 0.0165 REMARK 3 S31: -0.0247 S32: -0.0248 S33: 0.0799 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 427 A 437 REMARK 3 RESIDUE RANGE : A 452 A 466 REMARK 3 RESIDUE RANGE : A 496 A 529 REMARK 3 ORIGIN FOR THE GROUP (A): -20.0759 40.8473 26.0444 REMARK 3 T TENSOR REMARK 3 T11: 0.0407 T22: 0.0505 REMARK 3 T33: 0.0358 T12: 0.0134 REMARK 3 T13: -0.0328 T23: -0.0251 REMARK 3 L TENSOR REMARK 3 L11: 1.0133 L22: 1.7000 REMARK 3 L33: 1.3267 L12: 0.5696 REMARK 3 L13: 0.4810 L23: 0.6454 REMARK 3 S TENSOR REMARK 3 S11: 0.0329 S12: 0.0202 S13: -0.0340 REMARK 3 S21: -0.0382 S22: -0.0015 S23: -0.0500 REMARK 3 S31: 0.0558 S32: -0.0423 S33: -0.0314 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 536 A 548 REMARK 3 ORIGIN FOR THE GROUP (A): -9.0062 55.2227 16.5086 REMARK 3 T TENSOR REMARK 3 T11: 0.3435 T22: 0.5471 REMARK 3 T33: 0.1048 T12: -0.1921 REMARK 3 T13: -0.0228 T23: 0.1916 REMARK 3 L TENSOR REMARK 3 L11: 6.6509 L22: 9.6501 REMARK 3 L33: 22.9384 L12: 0.9368 REMARK 3 L13: -9.8369 L23: 1.8308 REMARK 3 S TENSOR REMARK 3 S11: -0.7185 S12: 1.1977 S13: 0.1743 REMARK 3 S21: -1.5041 S22: 0.2648 S23: -0.2681 REMARK 3 S31: 0.2249 S32: -0.2272 S33: 0.4537 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 438 A 451 REMARK 3 ORIGIN FOR THE GROUP (A): -29.9645 31.5693 19.6728 REMARK 3 T TENSOR REMARK 3 T11: 0.0964 T22: 0.1099 REMARK 3 T33: 0.0949 T12: 0.0039 REMARK 3 T13: -0.0260 T23: 0.0064 REMARK 3 L TENSOR REMARK 3 L11: 0.1733 L22: 2.6997 REMARK 3 L33: 1.0013 L12: 0.0225 REMARK 3 L13: 0.2976 L23: -1.0846 REMARK 3 S TENSOR REMARK 3 S11: 0.0250 S12: -0.0563 S13: 0.0776 REMARK 3 S21: 0.1671 S22: -0.1264 S23: 0.1196 REMARK 3 S31: -0.0066 S32: -0.0053 S33: 0.1014 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 3 ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. REMARK 3 ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. REMARK 4 REMARK 4 2XSE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-SEP-10. REMARK 100 THE PDBE ID CODE IS EBI-45557. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAR-10 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20683 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.90 REMARK 200 RESOLUTION RANGE LOW (A) : 20.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.2 REMARK 200 R MERGE (I) : 0.09 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.90 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 5.4 REMARK 200 R MERGE FOR SHELL (I) : 0.66 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.30 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX.HYSS,PHASER REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20MM HEPES PH 7.5, 50MM NACL, 1MM TCEP REMARK 280 15.3% PEG 6000, 0.2M POTASSIUM NITRATE, 20% GLYCEROL REMARK 280 (CRYO-PROTECTANT) REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.25400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 124.50800 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 93.38100 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 155.63500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 31.12700 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 62.25400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 124.50800 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 155.63500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 93.38100 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 31.12700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 392 REMARK 465 ASN A 393 REMARK 465 LEU A 394 REMARK 465 GLY A 530 REMARK 465 THR A 531 REMARK 465 ARG A 532 REMARK 465 TYR A 533 REMARK 465 PHE A 534 REMARK 465 LYS A 535 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLY A 529 CA C O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 402 4.68 -69.68 REMARK 500 HIS A 413 -5.88 75.65 REMARK 500 MSE A 514 78.69 -105.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A1562 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1563 DBREF 2XSE A 392 561 UNP Q9U6M1 JBP1_LEITA 392 561 SEQRES 1 A 170 THR ASN LEU MSE VAL SER THR ALA VAL GLU LYS LYS LYS SEQRES 2 A 170 TYR LEU ASP SER GLU PHE LEU LEU HIS CYS ILE SER ALA SEQRES 3 A 170 GLN LEU LEU ASP MSE TRP LYS GLN ALA ARG ALA ARG TRP SEQRES 4 A 170 LEU GLU LEU VAL GLY LYS GLU TRP ALA HIS MSE LEU ALA SEQRES 5 A 170 LEU ASN PRO GLU ARG LYS ASP PHE LEU TRP LYS ASN GLN SEQRES 6 A 170 SER GLU MSE ASN SER ALA PHE PHE ASP LEU CYS GLU VAL SEQRES 7 A 170 GLY LYS GLN VAL MSE LEU GLY LEU LEU GLY LYS GLU VAL SEQRES 8 A 170 ALA LEU PRO LYS GLU GLU GLN ALA PHE TRP ILE MSE TYR SEQRES 9 A 170 ALA VAL HIS LEU SER ALA ALA CYS ALA GLU GLU LEU HIS SEQRES 10 A 170 MSE PRO GLU VAL ALA MSE SER LEU ARG LYS LEU ASN VAL SEQRES 11 A 170 LYS LEU LYS ASP PHE ASN PHE GLY GLY THR ARG TYR PHE SEQRES 12 A 170 LYS ASP MSE PRO PRO GLU GLU LYS LYS ARG ARG MSE GLU SEQRES 13 A 170 ARG LYS GLN ARG ILE GLU GLU ALA ARG ARG HIS GLY MSE SEQRES 14 A 170 PRO MODRES 2XSE MSE A 395 MET SELENOMETHIONINE MODRES 2XSE MSE A 422 MET SELENOMETHIONINE MODRES 2XSE MSE A 441 MET SELENOMETHIONINE MODRES 2XSE MSE A 459 MET SELENOMETHIONINE MODRES 2XSE MSE A 474 MET SELENOMETHIONINE MODRES 2XSE MSE A 494 MET SELENOMETHIONINE MODRES 2XSE MSE A 509 MET SELENOMETHIONINE MODRES 2XSE MSE A 514 MET SELENOMETHIONINE MODRES 2XSE MSE A 537 MET SELENOMETHIONINE MODRES 2XSE MSE A 546 MET SELENOMETHIONINE MODRES 2XSE MSE A 560 MET SELENOMETHIONINE HET MSE A 395 8 HET MSE A 422 8 HET MSE A 441 8 HET MSE A 459 8 HET MSE A 474 8 HET MSE A 494 13 HET MSE A 509 8 HET MSE A 514 8 HET MSE A 537 8 HET MSE A 546 16 HET MSE A 560 8 HET NO3 A1562 4 HET GOL A1563 6 HETNAM MSE SELENOMETHIONINE HETNAM NO3 NITRATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 MSE 11(C5 H11 N O2 SE) FORMUL 3 NO3 N O3 1- FORMUL 4 GOL C3 H8 O3 FORMUL 5 HOH *164(H2 O) HELIX 1 1 MSE A 395 LYS A 402 1 8 HELIX 2 2 LYS A 403 LEU A 406 5 4 HELIX 3 3 ASP A 407 LEU A 412 1 6 HELIX 4 4 SER A 416 ASN A 445 1 30 HELIX 5 5 SER A 457 GLY A 479 1 23 HELIX 6 6 LEU A 484 GLU A 506 1 23 HELIX 7 7 SER A 515 PHE A 528 1 14 HELIX 8 8 PRO A 538 ARG A 557 1 20 LINK C MSE A 395 N VAL A 396 1555 1555 1.33 LINK C ASP A 421 N MSE A 422 1555 1555 1.33 LINK C MSE A 422 N TRP A 423 1555 1555 1.33 LINK C HIS A 440 N MSE A 441 1555 1555 1.33 LINK C MSE A 441 N LEU A 442 1555 1555 1.32 LINK C GLU A 458 N MSE A 459 1555 1555 1.33 LINK C MSE A 459 N ASN A 460 1555 1555 1.33 LINK C VAL A 473 N MSE A 474 1555 1555 1.33 LINK C MSE A 474 N LEU A 475 1555 1555 1.33 LINK C ILE A 493 N MSE A 494 1555 1555 1.34 LINK C MSE A 494 N TYR A 495 1555 1555 1.33 LINK C HIS A 508 N MSE A 509 1555 1555 1.32 LINK C MSE A 509 N PRO A 510 1555 1555 1.35 LINK C ALA A 513 N MSE A 514 1555 1555 1.34 LINK C MSE A 514 N SER A 515 1555 1555 1.32 LINK C ASP A 536 N MSE A 537 1555 1555 1.33 LINK C MSE A 537 N PRO A 538 1555 1555 1.35 LINK C ARG A 545 N BMSE A 546 1555 1555 1.33 LINK C ARG A 545 N AMSE A 546 1555 1555 1.33 LINK C BMSE A 546 N GLU A 547 1555 1555 1.33 LINK C AMSE A 546 N GLU A 547 1555 1555 1.33 LINK C GLY A 559 N MSE A 560 1555 1555 1.34 LINK C MSE A 560 N PRO A 561 1555 1555 1.35 SITE 1 AC1 6 ASN A 445 GLU A 447 LEU A 484 PRO A 485 SITE 2 AC1 6 LYS A 486 HOH A2161 SITE 1 AC2 6 GLU A 481 SER A 515 ARG A 517 LYS A 518 SITE 2 AC2 6 HOH A2057 HOH A2162 CRYST1 67.338 67.338 186.762 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014850 0.008574 0.000000 0.00000 SCALE2 0.000000 0.017148 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005354 0.00000 HETATM 1 N MSE A 395 -11.155 33.556 44.249 1.00 78.17 N ANISOU 1 N MSE A 395 10479 9183 10037 -48 -557 351 N HETATM 2 CA MSE A 395 -11.208 34.938 43.673 1.00 94.21 C ANISOU 2 CA MSE A 395 12443 11333 12020 -24 -493 264 C HETATM 3 C MSE A 395 -12.495 35.200 42.896 1.00 93.60 C ANISOU 3 C MSE A 395 12342 11275 11945 -77 -441 203 C HETATM 4 O MSE A 395 -13.104 36.259 43.055 1.00 91.52 O ANISOU 4 O MSE A 395 12038 11114 11621 -112 -387 180 O HETATM 5 CB MSE A 395 -10.008 35.195 42.759 1.00 98.21 C ANISOU 5 CB MSE A 395 12913 11837 12563 88 -507 192 C HETATM 6 CG MSE A 395 -8.734 35.618 43.486 1.00100.37 C ANISOU 6 CG MSE A 395 13168 12157 12810 139 -536 228 C HETATM 7 SE MSE A 395 -7.441 36.443 42.264 1.00114.19 SE ANISOU 7 SE MSE A 395 14838 13967 14584 252 -519 129 SE HETATM 8 CE MSE A 395 -8.263 38.183 42.067 1.00 42.59 C ANISOU 8 CE MSE A 395 5722 5024 5437 190 -439 85 C