HEADER OXIDOREDUCTASE/ELECTRON TRANSPORT 12-OCT-10 2XTS TITLE CRYSTAL STRUCTURE OF THE SULFANE DEHYDROGENASE SOXCD FROM PARACOCCUS TITLE 2 PANTOTROPHUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SULFITE DEHYDROGENASE; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: RESIDUES 41-430; COMPND 5 SYNONYM: SULFANE DEHYDROGENASE; COMPND 6 EC: 1.8.2.1; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CYTOCHROME; COMPND 9 CHAIN: B, D; COMPND 10 FRAGMENT: RESIDUES 1-205 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PARACOCCUS PANTOTROPHUS; SOURCE 3 ORGANISM_TAXID: 82367; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: PARACOCCUS PANTOTROPHUS; SOURCE 6 ORGANISM_TAXID: 82367 KEYWDS OXIDOREDUCTASE-ELECTRON TRANSPORT COMPLEX, SOX SYSTEM, SULFANE KEYWDS 2 OXIDATION, MOLYBDENUM COFACTOR, HEME, ELECTRON TRANSFER EXPDTA X-RAY DIFFRACTION AUTHOR U.ZANDER,A.FAUST,B.U.KLINK,D.DE SANCTIS,S.PANJIKAR,A.QUENTMEIER, AUTHOR 2 F.BARDISCHEWSKI,C.G.FRIEDRICH,A.J.SCHEIDIG REVDAT 3 20-NOV-24 2XTS 1 REMARK LINK REVDAT 2 30-MAR-11 2XTS 1 JRNL REVDAT 1 08-DEC-10 2XTS 0 JRNL AUTH U.ZANDER,A.FAUST,B.U.KLINK,D.DE SANCTIS,S.PANJIKAR, JRNL AUTH 2 A.QUENTMEIER,F.BARDISCHEWSKY,C.G.FRIEDRICH,A.J.SCHEIDIG JRNL TITL STRUCTURAL BASIS FOR THE OXIDATION OF PROTEIN-BOUND SULFUR JRNL TITL 2 BY THE SULFUR CYCLE MOLYBDOHEMO-ENZYME SULFANE DEHYDROGENASE JRNL TITL 3 SOXCD. JRNL REF J.BIOL.CHEM. V. 286 8349 2011 JRNL REFN ISSN 0021-9258 JRNL PMID 21147779 JRNL DOI 10.1074/JBC.M110.193631 REMARK 2 REMARK 2 RESOLUTION. 1.33 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.33 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 273185 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.107 REMARK 3 R VALUE (WORKING SET) : 0.107 REMARK 3 FREE R VALUE : 0.111 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 0.300 REMARK 3 FREE R VALUE TEST SET COUNT : 803 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.33 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 15400 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 69.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.0680 REMARK 3 BIN FREE R VALUE SET COUNT : 52 REMARK 3 BIN FREE R VALUE : 0.0950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9173 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 202 REMARK 3 SOLVENT ATOMS : 956 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 9.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 8.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.05000 REMARK 3 B22 (A**2) : -0.05000 REMARK 3 B33 (A**2) : 0.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.007 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.006 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.018 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.831 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.980 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.979 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 9754 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 6493 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 13349 ; 1.499 ; 1.988 REMARK 3 BOND ANGLES OTHERS (DEGREES): 15815 ; 0.913 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1225 ; 6.240 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 437 ;33.797 ;24.096 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1489 ;11.121 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 59 ;16.506 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1414 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 11023 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1968 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5956 ; 1.527 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2427 ; 1.650 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 9614 ; 2.120 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3798 ; 2.864 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3714 ; 3.899 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 9553 ; 1.548 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY. REMARK 4 REMARK 4 2XTS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-OCT-10. REMARK 100 THE DEPOSITION ID IS D_1290045675. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 273185 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.330 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 200 DATA REDUNDANCY : 1.800 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.33 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.2 REMARK 200 DATA REDUNDANCY IN SHELL : 1.50 REMARK 200 R MERGE FOR SHELL (I) : 0.26000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTO-RICKSHAW REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4% (W/V) MPEG 5000, 40 MM TRIS-HCL (PH REMARK 280 8), 20 MM CA-ACETATE, 10 MM CO(III)-HEXAMINECHLORIDE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 25.46333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 50.92667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 35000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -273.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 41 REMARK 465 ASP B 25 REMARK 465 ALA C 41 REMARK 465 ASP D 25 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO B 229 CA C O CB CG CD REMARK 470 PRO D 229 CG CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS D 73 CAC HEC D 500 2.11 REMARK 500 O HOH C 2195 O HOH C 2196 2.12 REMARK 500 SG CYS B 73 CAC HEC B 500 2.16 REMARK 500 O HOH D 2142 O HOH D 2143 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 79 NE - CZ - NH1 ANGL. DEV. = -5.1 DEGREES REMARK 500 ARG A 79 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 43 89.24 75.33 REMARK 500 SER A 56 -52.48 -137.08 REMARK 500 SER A 117 31.38 -140.25 REMARK 500 SER A 218 -44.51 68.40 REMARK 500 ASP A 230 -79.02 -82.77 REMARK 500 THR A 283 -73.09 -129.73 REMARK 500 VAL A 407 -46.02 72.94 REMARK 500 CYS B 70 -37.84 -132.79 REMARK 500 ASP B 82 -123.31 46.00 REMARK 500 TYR B 106 -35.97 -137.09 REMARK 500 SER B 125 53.15 -151.56 REMARK 500 ASP B 173 121.07 -35.41 REMARK 500 SER C 56 -52.59 -136.41 REMARK 500 SER C 92 -169.93 -164.84 REMARK 500 SER C 218 -45.67 70.25 REMARK 500 ASP C 230 -79.75 -80.15 REMARK 500 ASP C 231 18.74 -141.47 REMARK 500 THR C 283 -73.69 -129.20 REMARK 500 VAL C 407 -48.01 74.42 REMARK 500 CYS D 70 -33.41 -137.09 REMARK 500 ASP D 82 -119.48 48.03 REMARK 500 TYR D 106 -38.48 -136.01 REMARK 500 SER D 125 52.01 -153.80 REMARK 500 ASP D 173 120.86 -34.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 HEME C (HEC): HEME GROUP IS NONPLANAR REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 2MO A 501 MO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 160 SG REMARK 620 2 2MO A 501 OT1 103.0 REMARK 620 3 2MO A 501 OT2 80.6 113.0 REMARK 620 4 MTE A 500 S2' 94.6 107.2 139.6 REMARK 620 5 MTE A 500 S1' 147.3 109.0 80.9 82.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A1431 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 259 OE1 REMARK 620 2 THR A 299 O 85.3 REMARK 620 3 THR A 299 OG1 169.5 86.4 REMARK 620 4 HIS A 409 NE2 95.9 88.9 90.4 REMARK 620 5 HOH A2299 O 100.4 174.0 87.7 92.1 REMARK 620 6 HOH A2300 O 88.0 87.6 85.2 174.6 90.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1229 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2066 O REMARK 620 2 HOH A2127 O 129.6 REMARK 620 3 HOH A2129 O 59.1 70.9 REMARK 620 4 GLY B 214 O 149.7 79.7 147.3 REMARK 620 5 HOH B2156 O 110.2 81.7 110.9 77.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D1231 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 36 OE2 REMARK 620 2 HOH B2005 O 87.9 REMARK 620 3 THR D 128 O 176.3 90.6 REMARK 620 4 HOH D2088 O 90.6 78.6 92.4 REMARK 620 5 HOH D2095 O 91.0 65.4 85.3 143.9 REMARK 620 6 HOH D2097 O 77.6 136.8 101.3 141.0 74.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC B 500 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 74 NE2 REMARK 620 2 HEC B 500 NA 90.2 REMARK 620 3 HEC B 500 NB 88.7 89.6 REMARK 620 4 HEC B 500 NC 86.1 176.3 90.8 REMARK 620 5 HEC B 500 ND 89.6 89.4 178.0 90.1 REMARK 620 6 MET B 121 SD 175.0 92.6 87.2 91.2 94.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D1230 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 128 O REMARK 620 2 HOH B2090 O 91.7 REMARK 620 3 HOH B2098 O 88.7 142.9 REMARK 620 4 HOH B2099 O 98.1 143.3 73.0 REMARK 620 5 GLU D 36 OE2 176.3 92.0 88.2 79.1 REMARK 620 6 HOH D2004 O 92.5 77.9 65.0 136.3 88.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1228 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH D2144 O REMARK 620 2 HOH D2147 O 77.1 REMARK 620 3 HOH D2148 O 91.4 72.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D1229 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B2140 O REMARK 620 2 HOH B2143 O 77.4 REMARK 620 3 HOH B2144 O 93.0 77.5 REMARK 620 4 HOH C2001 O 80.0 67.2 144.7 REMARK 620 5 HOH D2029 O 122.9 135.4 63.4 147.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 2MO C 501 MO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 160 SG REMARK 620 2 2MO C 501 OT1 80.9 REMARK 620 3 2MO C 501 OT2 102.2 111.2 REMARK 620 4 MTE C 500 S1' 147.2 81.2 109.8 REMARK 620 5 MTE C 500 S2' 94.5 140.2 108.4 82.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO C1431 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 259 OE1 REMARK 620 2 THR C 299 OG1 170.8 REMARK 620 3 THR C 299 O 86.2 86.7 REMARK 620 4 HIS C 409 NE2 94.4 91.0 87.4 REMARK 620 5 HOH C2305 O 88.7 85.4 88.2 174.4 REMARK 620 6 HOH C2306 O 99.0 88.0 174.6 93.8 90.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D1232 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH C2120 O REMARK 620 2 HOH C2122 O 71.3 REMARK 620 3 GLY D 214 O 82.2 149.9 REMARK 620 4 HOH D2156 O 81.0 110.3 78.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC D 500 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 74 NE2 REMARK 620 2 HEC D 500 NA 90.0 REMARK 620 3 HEC D 500 NB 88.6 90.0 REMARK 620 4 HEC D 500 NC 87.2 177.2 90.0 REMARK 620 5 HEC D 500 ND 90.6 89.4 179.0 90.5 REMARK 620 6 MET D 121 SD 175.5 92.1 87.5 90.7 93.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MTE A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2MO A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC B 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MTE C 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2MO C 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC D 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1228 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1229 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA D 1229 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA D 1230 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA D 1231 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA D 1232 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO C 1431 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 1431 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 1233 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1230 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1432 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 1234 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1231 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 1432 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1433 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1434 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 1433 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1WQ0 RELATED DB: PDB REMARK 900 HOMOLOGY MODELLING OF THE INTERMEDIATE REGION OF SOXD DBREF 2XTS A 41 430 UNP P72178 P72178_PARDE 41 430 DBREF 2XTS B 25 229 UNP O07819 O07819_PARDE 1 205 DBREF 2XTS C 41 430 UNP P72178 P72178_PARDE 41 430 DBREF 2XTS D 25 229 UNP O07819 O07819_PARDE 1 205 SEQRES 1 A 390 ALA GLY THR PRO ASP PRO LEU ILE THR GLU ILE GLN PRO SEQRES 2 A 390 TRP ALA SER GLU PHE GLY GLU ALA VAL ASP ALA HIS PRO SEQRES 3 A 390 TYR GLY LEU PRO ILE HIS PHE GLU SER HIS VAL LYS ARG SEQRES 4 A 390 GLN TYR VAL GLU TRP LEU THR GLU SER PRO VAL SER SER SEQRES 5 A 390 ILE ASN PHE THR PRO ILE HIS ALA LEU GLU GLY THR ILE SEQRES 6 A 390 THR PRO GLN GLY CYS ALA PHE GLU ARG HIS HIS SER GLY SEQRES 7 A 390 ALA ILE GLU LEU SER LYS GLN ASP TYR ARG LEU MET ILE SEQRES 8 A 390 ASN GLY LEU VAL GLU LYS PRO LEU VAL PHE THR PHE GLU SEQRES 9 A 390 ASP LEU LEU ARG PHE PRO ARG THR THR THR THR ALA PHE SEQRES 10 A 390 CYS GLU CYS ALA ALA ASN GLY GLY MET GLU TRP GLY GLY SEQRES 11 A 390 ALA GLN LEU GLU GLY CYS GLN TYR THR GLN GLY MET ILE SEQRES 12 A 390 HIS ASN MET GLU TYR VAL GLY VAL PRO LEU SER VAL LEU SEQRES 13 A 390 LEU ALA GLU ALA GLY VAL LYS PRO GLU GLY LYS TRP LEU SEQRES 14 A 390 TYR ALA GLU GLY ALA ASP ALA SER SER ASN GLY ARG SER SEQRES 15 A 390 PHE PRO MET GLU LYS VAL MET ASP ASP VAL MET LEU ALA SEQRES 16 A 390 PHE PHE ALA ASN GLY GLU ALA LEU ARG LYS GLU HIS GLY SEQRES 17 A 390 TYR PRO ALA ARG LEU VAL VAL PRO GLY TRP GLU GLY ASN SEQRES 18 A 390 MET TRP VAL LYS TRP VAL ARG ARG LEU GLY ILE TYR ASP SEQRES 19 A 390 LYS ALA VAL GLU SER ARG GLU GLU THR SER LYS TYR THR SEQRES 20 A 390 ASP LEU MET PRO ASP GLY ARG ALA ARG LYS TRP THR TRP SEQRES 21 A 390 VAL MET ASP ALA LYS SER VAL ILE THR SER PRO SER PRO SEQRES 22 A 390 GLN VAL PRO ILE ARG HIS GLY LYS GLY PRO LEU VAL ILE SEQRES 23 A 390 SER GLY LEU ALA TRP SER GLY ASN GLY ARG ILE THR ARG SEQRES 24 A 390 VAL ASP VAL SER LEU ASP GLY GLY LYS ASN TRP THR THR SEQRES 25 A 390 ALA ARG ILE THR GLY GLN ALA LEU PRO LYS ALA LEU THR SEQRES 26 A 390 ARG PHE HIS LEU ASP ILE ASP TRP ASP GLY SER GLU MET SEQRES 27 A 390 LEU LEU GLN SER ARG ALA VAL ASP GLU THR GLY TYR VAL SEQRES 28 A 390 GLN PRO THR LYS ASP ALA LEU ARG ALA ILE ARG GLY ARG SEQRES 29 A 390 ASN ASN VAL TYR HIS ASN ASN GLY ILE GLN THR TRP TRP SEQRES 30 A 390 VAL LYS ALA ASP GLY GLU VAL GLU ASN VAL GLU ILE ALA SEQRES 1 B 205 ASP LYS LEU GLY LEU GLY ARG GLU ALA LEU PRO GLU GLU SEQRES 2 B 205 ILE SER ALA TRP ASP THR ALA VAL LEU PRO ASP GLY GLN SEQRES 3 B 205 GLY LEU ARG PRO GLY SER GLY ASP VAL ALA THR GLY ASP SEQRES 4 B 205 ALA LEU PHE ALA ASP ASN CYS ALA SER CYS HIS GLY ASP SEQRES 5 B 205 PHE ALA GLU GLY LEU ASP SER TRP PRO VAL LEU ALA GLY SEQRES 6 B 205 GLY ASP GLY SER LEU THR ASP PRO ARG PRO VAL LYS THR SEQRES 7 B 205 ILE GLY SER TYR TRP PRO TYR LEU SER THR VAL TYR ASP SEQRES 8 B 205 TYR VAL HIS ARG SER MET PRO PHE GLY SER ALA GLN THR SEQRES 9 B 205 LEU SER VAL ASP ASP THR TYR ALA ILE THR ALA PHE LEU SEQRES 10 B 205 LEU TYR SER ASN GLY LEU VAL GLU ASP ASP PHE VAL LEU SEQRES 11 B 205 THR HIS GLU ASN PHE THR GLN VAL VAL LEU PRO ASN ALA SEQRES 12 B 205 GLU GLY PHE TYR PRO ASP ASP ARG ASP GLN THR GLU TYR SEQRES 13 B 205 PRO LEU PHE SER LYS GLU PRO CYS MET THR ASP CYS ALA SEQRES 14 B 205 VAL GLY VAL GLU ILE THR LYS ARG ALA VAL ASP LEU ASN SEQRES 15 B 205 VAL THR PRO GLU ASP PRO ASP GLY ARG PRO ALA GLY SER SEQRES 16 B 205 MET PRO ASP LEU GLY ALA ALA ALA ALA PRO SEQRES 1 C 390 ALA GLY THR PRO ASP PRO LEU ILE THR GLU ILE GLN PRO SEQRES 2 C 390 TRP ALA SER GLU PHE GLY GLU ALA VAL ASP ALA HIS PRO SEQRES 3 C 390 TYR GLY LEU PRO ILE HIS PHE GLU SER HIS VAL LYS ARG SEQRES 4 C 390 GLN TYR VAL GLU TRP LEU THR GLU SER PRO VAL SER SER SEQRES 5 C 390 ILE ASN PHE THR PRO ILE HIS ALA LEU GLU GLY THR ILE SEQRES 6 C 390 THR PRO GLN GLY CYS ALA PHE GLU ARG HIS HIS SER GLY SEQRES 7 C 390 ALA ILE GLU LEU SER LYS GLN ASP TYR ARG LEU MET ILE SEQRES 8 C 390 ASN GLY LEU VAL GLU LYS PRO LEU VAL PHE THR PHE GLU SEQRES 9 C 390 ASP LEU LEU ARG PHE PRO ARG THR THR THR THR ALA PHE SEQRES 10 C 390 CYS GLU CYS ALA ALA ASN GLY GLY MET GLU TRP GLY GLY SEQRES 11 C 390 ALA GLN LEU GLU GLY CYS GLN TYR THR GLN GLY MET ILE SEQRES 12 C 390 HIS ASN MET GLU TYR VAL GLY VAL PRO LEU SER VAL LEU SEQRES 13 C 390 LEU ALA GLU ALA GLY VAL LYS PRO GLU GLY LYS TRP LEU SEQRES 14 C 390 TYR ALA GLU GLY ALA ASP ALA SER SER ASN GLY ARG SER SEQRES 15 C 390 PHE PRO MET GLU LYS VAL MET ASP ASP VAL MET LEU ALA SEQRES 16 C 390 PHE PHE ALA ASN GLY GLU ALA LEU ARG LYS GLU HIS GLY SEQRES 17 C 390 TYR PRO ALA ARG LEU VAL VAL PRO GLY TRP GLU GLY ASN SEQRES 18 C 390 MET TRP VAL LYS TRP VAL ARG ARG LEU GLY ILE TYR ASP SEQRES 19 C 390 LYS ALA VAL GLU SER ARG GLU GLU THR SER LYS TYR THR SEQRES 20 C 390 ASP LEU MET PRO ASP GLY ARG ALA ARG LYS TRP THR TRP SEQRES 21 C 390 VAL MET ASP ALA LYS SER VAL ILE THR SER PRO SER PRO SEQRES 22 C 390 GLN VAL PRO ILE ARG HIS GLY LYS GLY PRO LEU VAL ILE SEQRES 23 C 390 SER GLY LEU ALA TRP SER GLY ASN GLY ARG ILE THR ARG SEQRES 24 C 390 VAL ASP VAL SER LEU ASP GLY GLY LYS ASN TRP THR THR SEQRES 25 C 390 ALA ARG ILE THR GLY GLN ALA LEU PRO LYS ALA LEU THR SEQRES 26 C 390 ARG PHE HIS LEU ASP ILE ASP TRP ASP GLY SER GLU MET SEQRES 27 C 390 LEU LEU GLN SER ARG ALA VAL ASP GLU THR GLY TYR VAL SEQRES 28 C 390 GLN PRO THR LYS ASP ALA LEU ARG ALA ILE ARG GLY ARG SEQRES 29 C 390 ASN ASN VAL TYR HIS ASN ASN GLY ILE GLN THR TRP TRP SEQRES 30 C 390 VAL LYS ALA ASP GLY GLU VAL GLU ASN VAL GLU ILE ALA SEQRES 1 D 205 ASP LYS LEU GLY LEU GLY ARG GLU ALA LEU PRO GLU GLU SEQRES 2 D 205 ILE SER ALA TRP ASP THR ALA VAL LEU PRO ASP GLY GLN SEQRES 3 D 205 GLY LEU ARG PRO GLY SER GLY ASP VAL ALA THR GLY ASP SEQRES 4 D 205 ALA LEU PHE ALA ASP ASN CYS ALA SER CYS HIS GLY ASP SEQRES 5 D 205 PHE ALA GLU GLY LEU ASP SER TRP PRO VAL LEU ALA GLY SEQRES 6 D 205 GLY ASP GLY SER LEU THR ASP PRO ARG PRO VAL LYS THR SEQRES 7 D 205 ILE GLY SER TYR TRP PRO TYR LEU SER THR VAL TYR ASP SEQRES 8 D 205 TYR VAL HIS ARG SER MET PRO PHE GLY SER ALA GLN THR SEQRES 9 D 205 LEU SER VAL ASP ASP THR TYR ALA ILE THR ALA PHE LEU SEQRES 10 D 205 LEU TYR SER ASN GLY LEU VAL GLU ASP ASP PHE VAL LEU SEQRES 11 D 205 THR HIS GLU ASN PHE THR GLN VAL VAL LEU PRO ASN ALA SEQRES 12 D 205 GLU GLY PHE TYR PRO ASP ASP ARG ASP GLN THR GLU TYR SEQRES 13 D 205 PRO LEU PHE SER LYS GLU PRO CYS MET THR ASP CYS ALA SEQRES 14 D 205 VAL GLY VAL GLU ILE THR LYS ARG ALA VAL ASP LEU ASN SEQRES 15 D 205 VAL THR PRO GLU ASP PRO ASP GLY ARG PRO ALA GLY SER SEQRES 16 D 205 MET PRO ASP LEU GLY ALA ALA ALA ALA PRO HET MTE A 500 24 HET 2MO A 501 3 HET CO A1431 1 HET GOL A1432 6 HET GOL A1433 6 HET GOL A1434 6 HET HEC B 500 43 HET CA B1228 1 HET CA B1229 1 HET GOL B1230 6 HET GOL B1231 6 HET MTE C 500 24 HET 2MO C 501 3 HET CO C1431 1 HET GOL C1432 6 HET GOL C1433 6 HET HEC D 500 43 HET CA D1229 1 HET CA D1230 1 HET CA D1231 1 HET CA D1232 1 HET GOL D1233 6 HET GOL D1234 6 HETNAM MTE PHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7, HETNAM 2 MTE 8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA- HETNAM 3 MTE ANTHRACEN-7-YLMETHYL)ESTER HETNAM 2MO MOLYBDENUM (IV)OXIDE HETNAM CO COBALT (II) ION HETNAM GOL GLYCEROL HETNAM HEC HEME C HETNAM CA CALCIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 MTE 2(C10 H14 N5 O6 P S2) FORMUL 6 2MO 2(MO O2) FORMUL 7 CO 2(CO 2+) FORMUL 8 GOL 9(C3 H8 O3) FORMUL 11 HEC 2(C34 H34 FE N4 O4) FORMUL 12 CA 6(CA 2+) FORMUL 28 HOH *956(H2 O) HELIX 1 1 ASP A 45 GLU A 50 1 6 HELIX 2 2 GLN A 52 SER A 56 5 5 HELIX 3 3 ILE A 71 SER A 75 5 5 HELIX 4 4 VAL A 82 THR A 86 5 5 HELIX 5 5 PRO A 107 ALA A 111 5 5 HELIX 6 6 THR A 142 LEU A 147 1 6 HELIX 7 7 GLY A 164 TRP A 168 5 5 HELIX 8 8 GLY A 175 GLY A 181 1 7 HELIX 9 9 LEU A 193 GLY A 201 1 9 HELIX 10 10 MET A 225 VAL A 232 1 8 HELIX 11 11 ARG A 244 GLY A 248 5 5 HELIX 12 12 GLU A 259 TRP A 263 5 5 HELIX 13 13 SER A 279 THR A 283 5 5 HELIX 14 14 THR A 394 GLY A 403 1 10 HELIX 15 15 LEU B 34 ASP B 42 1 9 HELIX 16 16 VAL B 59 CYS B 70 1 12 HELIX 17 17 CYS B 70 GLY B 75 1 6 HELIX 18 18 TYR B 109 MET B 121 1 13 HELIX 19 19 SER B 130 ASN B 145 1 16 HELIX 20 20 ASN B 158 VAL B 162 5 5 HELIX 21 21 ASP B 174 GLU B 179 1 6 HELIX 22 22 GLU B 179 SER B 184 1 6 HELIX 23 23 VAL B 203 LEU B 205 5 3 HELIX 24 24 ASP C 45 GLU C 50 1 6 HELIX 25 25 GLN C 52 SER C 56 5 5 HELIX 26 26 ILE C 71 SER C 75 5 5 HELIX 27 27 VAL C 82 THR C 86 5 5 HELIX 28 28 PRO C 107 ALA C 111 5 5 HELIX 29 29 THR C 142 LEU C 147 1 6 HELIX 30 30 GLY C 164 TRP C 168 5 5 HELIX 31 31 GLY C 175 GLY C 181 1 7 HELIX 32 32 LEU C 193 GLY C 201 1 9 HELIX 33 33 MET C 225 VAL C 232 1 8 HELIX 34 34 ARG C 244 GLY C 248 5 5 HELIX 35 35 GLU C 259 TRP C 263 5 5 HELIX 36 36 SER C 279 THR C 283 5 5 HELIX 37 37 THR C 394 GLY C 403 1 10 HELIX 38 38 LEU D 34 ASP D 42 1 9 HELIX 39 39 VAL D 59 CYS D 70 1 12 HELIX 40 40 CYS D 70 GLY D 75 1 6 HELIX 41 41 THR D 102 TRP D 107 1 6 HELIX 42 42 TYR D 109 MET D 121 1 13 HELIX 43 43 SER D 130 ASN D 145 1 16 HELIX 44 44 ASN D 158 VAL D 162 5 5 HELIX 45 45 ASP D 174 GLU D 179 1 6 HELIX 46 46 GLU D 179 SER D 184 1 6 HELIX 47 47 VAL D 203 LEU D 205 5 3 SHEET 1 AA 2 SER A 92 ILE A 93 0 SHEET 2 AA 2 ARG A 114 HIS A 115 -1 O HIS A 115 N SER A 92 SHEET 1 AB 6 ARG A 221 PRO A 224 0 SHEET 2 AB 6 TRP A 208 GLY A 213 -1 O LEU A 209 N PHE A 223 SHEET 3 AB 6 VAL A 267 TYR A 273 -1 N ARG A 268 O GLU A 212 SHEET 4 AB 6 LEU A 129 GLY A 133 1 O MET A 130 N LEU A 270 SHEET 5 AB 6 LEU A 139 PHE A 141 -1 O LEU A 139 N ILE A 131 SHEET 6 AB 6 ARG B 31 GLU B 32 -1 O ARG B 31 N VAL A 140 SHEET 1 AC 4 THR A 152 GLU A 159 0 SHEET 2 AC 4 ILE A 183 PRO A 192 -1 O HIS A 184 N CYS A 158 SHEET 3 AC 4 MET A 233 ALA A 238 -1 O LEU A 234 N VAL A 191 SHEET 4 AC 4 GLU A 241 ALA A 242 1 O GLU A 241 N ALA A 238 SHEET 1 AD 4 THR A 152 GLU A 159 0 SHEET 2 AD 4 ILE A 183 PRO A 192 -1 O HIS A 184 N CYS A 158 SHEET 3 AD 4 MET A 233 ALA A 238 -1 O LEU A 234 N VAL A 191 SHEET 4 AD 4 ARG A 252 VAL A 254 -1 O ARG A 252 N ALA A 235 SHEET 1 AE 2 GLU A 241 ALA A 242 0 SHEET 2 AE 2 MET A 233 ALA A 238 1 O ALA A 238 N GLU A 241 SHEET 1 AF 3 ASP A 288 LEU A 289 0 SHEET 2 AF 3 ALA A 295 LYS A 297 -1 O ARG A 296 N ASP A 288 SHEET 3 AF 3 PHE B 170 PRO B 172 1 O TYR B 171 N LYS A 297 SHEET 1 AG 4 LYS A 305 SER A 310 0 SHEET 2 AG 4 GLY A 322 TRP A 331 -1 O SER A 327 N SER A 310 SHEET 3 AG 4 THR A 365 TRP A 373 -1 O THR A 365 N ALA A 330 SHEET 4 AG 4 ARG A 354 THR A 356 -1 O ARG A 354 N HIS A 368 SHEET 1 AH 6 THR A 351 THR A 352 0 SHEET 2 AH 6 ILE A 337 SER A 343 -1 O VAL A 342 N THR A 351 SHEET 3 AH 6 MET A 378 ASP A 386 -1 O GLN A 381 N SER A 343 SHEET 4 AH 6 THR A 415 VAL A 418 -1 O TRP A 416 N LEU A 380 SHEET 5 AH 6 VAL A 424 ILE A 429 -1 O GLU A 425 N TRP A 417 SHEET 6 AH 6 ILE B 198 ARG B 201 -1 N THR B 199 O GLU A 428 SHEET 1 BA 2 SER B 56 ASP B 58 0 SHEET 2 BA 2 VAL B 153 THR B 155 -1 O LEU B 154 N GLY B 57 SHEET 1 CA 2 SER C 92 ILE C 93 0 SHEET 2 CA 2 ARG C 114 HIS C 115 -1 O HIS C 115 N SER C 92 SHEET 1 CB 6 ARG C 221 PRO C 224 0 SHEET 2 CB 6 TRP C 208 GLY C 213 -1 O LEU C 209 N PHE C 223 SHEET 3 CB 6 VAL C 267 TYR C 273 -1 N ARG C 268 O GLU C 212 SHEET 4 CB 6 LEU C 129 GLY C 133 1 O MET C 130 N LEU C 270 SHEET 5 CB 6 LEU C 139 PHE C 141 -1 O LEU C 139 N ILE C 131 SHEET 6 CB 6 ARG D 31 GLU D 32 -1 O ARG D 31 N VAL C 140 SHEET 1 CC 4 THR C 152 GLU C 159 0 SHEET 2 CC 4 ILE C 183 PRO C 192 -1 O HIS C 184 N CYS C 158 SHEET 3 CC 4 MET C 233 ALA C 238 -1 O LEU C 234 N VAL C 191 SHEET 4 CC 4 GLU C 241 ALA C 242 1 O GLU C 241 N ALA C 238 SHEET 1 CD 4 THR C 152 GLU C 159 0 SHEET 2 CD 4 ILE C 183 PRO C 192 -1 O HIS C 184 N CYS C 158 SHEET 3 CD 4 MET C 233 ALA C 238 -1 O LEU C 234 N VAL C 191 SHEET 4 CD 4 ARG C 252 VAL C 254 -1 O ARG C 252 N ALA C 235 SHEET 1 CE 2 GLU C 241 ALA C 242 0 SHEET 2 CE 2 MET C 233 ALA C 238 1 O ALA C 238 N GLU C 241 SHEET 1 CF 3 ASP C 288 LEU C 289 0 SHEET 2 CF 3 ALA C 295 LYS C 297 -1 O ARG C 296 N ASP C 288 SHEET 3 CF 3 PHE D 170 PRO D 172 1 O TYR D 171 N LYS C 297 SHEET 1 CG 4 LYS C 305 SER C 310 0 SHEET 2 CG 4 GLY C 322 TRP C 331 -1 O SER C 327 N SER C 310 SHEET 3 CG 4 THR C 365 TRP C 373 -1 O THR C 365 N ALA C 330 SHEET 4 CG 4 ARG C 354 THR C 356 -1 O ARG C 354 N HIS C 368 SHEET 1 CH 6 THR C 351 THR C 352 0 SHEET 2 CH 6 ILE C 337 SER C 343 -1 O VAL C 342 N THR C 351 SHEET 3 CH 6 MET C 378 ASP C 386 -1 O GLN C 381 N SER C 343 SHEET 4 CH 6 THR C 415 VAL C 418 -1 O TRP C 416 N LEU C 380 SHEET 5 CH 6 VAL C 424 ILE C 429 -1 O GLU C 425 N TRP C 417 SHEET 6 CH 6 ILE D 198 ARG D 201 -1 N THR D 199 O GLU C 428 SHEET 1 DA 2 SER D 56 ASP D 58 0 SHEET 2 DA 2 VAL D 153 THR D 155 -1 O LEU D 154 N GLY D 57 SSBOND 1 CYS B 188 CYS B 192 1555 1555 2.10 SSBOND 2 CYS D 188 CYS D 192 1555 1555 2.09 LINK SG CYS B 70 CAB HEC B 500 1555 1555 1.83 LINK SG CYS D 70 CAB HEC D 500 1555 1555 1.81 LINK SG CYS A 160 MO 2MO A 501 1555 1555 2.39 LINK OE1 GLU A 259 CO CO A1431 1555 1555 2.08 LINK O THR A 299 CO CO A1431 1555 1555 2.10 LINK OG1 THR A 299 CO CO A1431 1555 1555 2.14 LINK NE2 HIS A 409 CO CO A1431 1555 1555 2.15 LINK S2' MTE A 500 MO 2MO A 501 1555 1555 2.38 LINK S1' MTE A 500 MO 2MO A 501 1555 1555 2.37 LINK CO CO A1431 O HOH A2299 1555 1555 2.12 LINK CO CO A1431 O HOH A2300 1555 1555 2.15 LINK O HOH A2066 CA CA B1229 1555 1555 2.33 LINK O HOH A2127 CA CA B1229 1555 1555 2.31 LINK O HOH A2129 CA CA B1229 1555 1555 2.49 LINK OE2 GLU B 36 CA CA D1231 3675 1555 2.29 LINK NE2 HIS B 74 FE HEC B 500 1555 1555 2.02 LINK SD MET B 121 FE HEC B 500 1555 1555 2.36 LINK O THR B 128 CA CA D1230 3675 1555 2.18 LINK O GLY B 214 CA CA B1229 1555 1555 2.35 LINK CA CA B1228 O HOH D2144 1555 2765 2.43 LINK CA CA B1228 O HOH D2147 1555 2765 2.42 LINK CA CA B1228 O HOH D2148 1555 2765 2.52 LINK CA CA B1229 O HOH B2156 1555 1555 2.66 LINK O HOH B2005 CA CA D1231 3675 1555 2.35 LINK O HOH B2090 CA CA D1230 3675 1555 2.43 LINK O HOH B2098 CA CA D1230 3675 1555 2.49 LINK O HOH B2099 CA CA D1230 3675 1555 2.52 LINK O HOH B2140 CA CA D1229 3674 1555 2.45 LINK O HOH B2143 CA CA D1229 3674 1555 2.49 LINK O HOH B2144 CA CA D1229 3674 1555 2.55 LINK SG CYS C 160 MO 2MO C 501 1555 1555 2.39 LINK OE1 GLU C 259 CO CO C1431 1555 1555 2.07 LINK OG1 THR C 299 CO CO C1431 1555 1555 2.14 LINK O THR C 299 CO CO C1431 1555 1555 2.09 LINK NE2 HIS C 409 CO CO C1431 1555 1555 2.19 LINK S1' MTE C 500 MO 2MO C 501 1555 1555 2.35 LINK S2' MTE C 500 MO 2MO C 501 1555 1555 2.39 LINK CO CO C1431 O HOH C2305 1555 1555 2.14 LINK CO CO C1431 O HOH C2306 1555 1555 2.16 LINK O HOH C2001 CA CA D1229 3675 1555 2.43 LINK O HOH C2120 CA CA D1232 1555 1555 2.20 LINK O HOH C2122 CA CA D1232 1555 1555 2.52 LINK OE2 GLU D 36 CA CA D1230 1555 1555 2.31 LINK NE2 HIS D 74 FE HEC D 500 1555 1555 2.03 LINK SD MET D 121 FE HEC D 500 1555 1555 2.34 LINK O THR D 128 CA CA D1231 1555 1555 2.21 LINK O GLY D 214 CA CA D1232 1555 1555 2.37 LINK CA CA D1229 O HOH D2029 1555 1555 2.15 LINK CA CA D1230 O HOH D2004 1555 1555 2.48 LINK CA CA D1231 O HOH D2088 1555 1555 2.38 LINK CA CA D1231 O HOH D2095 1555 1555 2.52 LINK CA CA D1231 O HOH D2097 1555 1555 2.61 LINK CA CA D1232 O HOH D2156 1555 1555 2.59 CISPEP 1 TYR A 249 PRO A 250 0 6.88 CISPEP 2 SER A 310 PRO A 311 0 -7.12 CISPEP 3 SER A 310 PRO A 311 0 -13.16 CISPEP 4 MET B 121 PRO B 122 0 -8.07 CISPEP 5 TYR C 249 PRO C 250 0 6.07 CISPEP 6 SER C 310 PRO C 311 0 -7.49 CISPEP 7 SER C 310 PRO C 311 0 -13.68 CISPEP 8 MET D 121 PRO D 122 0 -9.71 SITE 1 AC1 19 PHE A 112 GLU A 113 ARG A 114 HIS A 115 SITE 2 AC1 19 HIS A 116 CYS A 160 HIS A 184 ASP A 215 SITE 3 AC1 19 ASN A 219 GLU A 246 HIS A 247 ARG A 252 SITE 4 AC1 19 GLY A 260 ASN A 261 TRP A 263 LYS A 265 SITE 5 AC1 19 TRP A 266 TYR A 286 2MO A 501 SITE 1 AC2 7 ARG A 114 CYS A 160 ALA A 161 ASN A 261 SITE 2 AC2 7 TYR A 286 MTE A 500 HOH A2297 SITE 1 AC3 23 SER A 91 HIS A 116 ARG A 280 SER A 284 SITE 2 AC3 23 ASN B 69 CYS B 70 CYS B 73 HIS B 74 SITE 3 AC3 23 TRP B 84 PRO B 85 LEU B 87 TRP B 107 SITE 4 AC3 23 TYR B 116 VAL B 117 MET B 121 PRO B 122 SITE 5 AC3 23 PHE B 123 ILE B 137 HOH B2074 HOH B2165 SITE 6 AC3 23 HOH B2166 HOH B2167 HOH B2168 SITE 1 AC4 19 PHE C 112 GLU C 113 ARG C 114 HIS C 115 SITE 2 AC4 19 HIS C 116 CYS C 160 HIS C 184 ASP C 215 SITE 3 AC4 19 ASN C 219 GLU C 246 HIS C 247 ARG C 252 SITE 4 AC4 19 GLY C 260 ASN C 261 TRP C 263 LYS C 265 SITE 5 AC4 19 TRP C 266 TYR C 286 2MO C 501 SITE 1 AC5 7 ARG C 114 CYS C 160 ALA C 161 ASN C 261 SITE 2 AC5 7 TYR C 286 MTE C 500 HOH C2304 SITE 1 AC6 23 SER C 91 HIS C 116 ARG C 280 SER C 284 SITE 2 AC6 23 ASN D 69 CYS D 70 CYS D 73 HIS D 74 SITE 3 AC6 23 TRP D 84 PRO D 85 LEU D 87 TRP D 107 SITE 4 AC6 23 TYR D 116 VAL D 117 MET D 121 PRO D 122 SITE 5 AC6 23 PHE D 123 ILE D 137 HOH D2078 HOH D2164 SITE 6 AC6 23 HOH D2165 HOH D2166 HOH D2167 SITE 1 AC7 3 HOH D2144 HOH D2147 HOH D2148 SITE 1 AC8 5 HOH A2066 HOH A2127 HOH A2129 GLY B 214 SITE 2 AC8 5 HOH B2156 SITE 1 AC9 5 HOH B2140 HOH B2143 HOH B2144 HOH C2001 SITE 2 AC9 5 HOH D2029 SITE 1 BC1 6 THR B 128 HOH B2090 HOH B2098 HOH B2099 SITE 2 BC1 6 GLU D 36 HOH D2004 SITE 1 BC2 6 GLU B 36 HOH B2005 THR D 128 HOH D2088 SITE 2 BC2 6 HOH D2095 HOH D2097 SITE 1 BC3 4 HOH C2120 HOH C2122 GLY D 214 HOH D2156 SITE 1 BC4 5 GLU C 259 THR C 299 HIS C 409 HOH C2305 SITE 2 BC4 5 HOH C2306 SITE 1 BC5 5 GLU A 259 THR A 299 HIS A 409 HOH A2299 SITE 2 BC5 5 HOH A2300 SITE 1 BC6 7 LYS C 78 GLN C 80 GLU D 210 ASP D 211 SITE 2 BC6 7 ALA D 217 HOH D2168 HOH D2169 SITE 1 BC7 6 GLY B 92 SER B 105 PRO B 165 ASN B 166 SITE 2 BC7 6 HOH B2169 HOH B2170 SITE 1 BC8 7 THR A 394 LYS A 395 ASP A 396 ILE A 413 SITE 2 BC8 7 GLU A 428 ILE A 429 HOH A2301 SITE 1 BC9 6 GLY D 92 SER D 105 PRO D 165 ASN D 166 SITE 2 BC9 6 HOH D2170 HOH D2171 SITE 1 CC1 9 GLY A 169 GLY A 170 GLN A 172 GOL A1434 SITE 2 CC1 9 LYS B 200 HOH B2171 HOH B2172 ALA D 71 SITE 3 CC1 9 ASP D 76 SITE 1 CC2 8 THR C 394 LYS C 395 ASP C 396 ILE C 413 SITE 2 CC2 8 THR C 415 GLU C 428 ILE C 429 HOH C2307 SITE 1 CC3 7 HIS A 99 LEU A 101 THR A 309 SER A 310 SITE 2 CC3 7 HOH A2302 HOH A2303 ARG C 151 SITE 1 CC4 8 GLY A 169 ARG A 404 HOH A2278 HOH A2304 SITE 2 CC4 8 GOL B1231 GLY D 75 ASP D 76 GLU D 79 SITE 1 CC5 8 ARG A 151 HIS C 99 LEU C 101 THR C 309 SITE 2 CC5 8 SER C 310 HOH C2308 HOH C2309 MET D 220 CRYST1 122.970 122.970 76.390 90.00 90.00 120.00 P 31 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008132 0.004695 0.000000 0.00000 SCALE2 0.000000 0.009390 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013091 0.00000 MTRIX1 1 -0.983300 0.181900 0.001500 102.73740 1 MTRIX2 1 0.181900 0.983300 -0.004400 -9.40590 1 MTRIX3 1 -0.002300 -0.004100 -1.000000 21.40010 1 MTRIX1 2 -0.984100 0.177500 -0.002200 103.14250 1 MTRIX2 2 0.177500 0.984100 -0.001800 -9.13850 1 MTRIX3 2 0.001900 -0.002200 -1.000000 20.99240 1