HEADER OXIDOREDUCTASE 15-OCT-10 2XU9 TITLE CRYSTAL STRUCTURE OF LACCASE FROM THERMUS THERMOPHILUS HB27 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LACCASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MATURE FORM, RESIDUES 24-462; COMPND 5 EC: 1.10.3.2; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: THE PRESENCE OF AN ISOLEUCINE AT THE POSITION 53 IS COMPND 9 STRONGLY SUPPORTED BY THE ELECTRON DENSITY. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 262724; SOURCE 4 STRAIN: HB27; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET32A KEYWDS OXIDOREDUCTASE, MULTICOPPER OXIDASES EXPDTA X-RAY DIFFRACTION AUTHOR H.SERRANO-POSADA,B.VALDERRAMA,E.RUDINO-PINERA REVDAT 5 20-DEC-23 2XU9 1 REMARK REVDAT 4 30-OCT-19 2XU9 1 REMARK LINK REVDAT 3 16-DEC-15 2XU9 1 JRNL REVDAT 2 09-DEC-15 2XU9 1 JRNL REVDAT 1 26-OCT-11 2XU9 0 JRNL AUTH H.SERRANO-POSADA,S.CENTENO-LEIJA,S.P.ROJAS-TREJO, JRNL AUTH 2 C.RODRIGUEZ-ALMAZAN,V.STOJANOFF,E.RUDINO-PINERA JRNL TITL X-RAY-INDUCED CATALYTIC ACTIVE-SITE REDUCTION OF A JRNL TITL 2 MULTICOPPER OXIDASE: STRUCTURAL INSIGHTS INTO THE JRNL TITL 3 PROTON-RELAY MECHANISM AND O2-REDUCTION STATES. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 71 2396 2015 JRNL REFN ISSN 0907-4449 JRNL PMID 26627648 JRNL DOI 10.1107/S1399004715018714 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 78896 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.178 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3958 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 22.8182 - 4.5455 1.00 2886 139 0.1639 0.1740 REMARK 3 2 4.5455 - 3.6125 1.00 2762 147 0.1169 0.1392 REMARK 3 3 3.6125 - 3.1572 1.00 2764 128 0.1275 0.1367 REMARK 3 4 3.1572 - 2.8691 1.00 2712 164 0.1337 0.1608 REMARK 3 5 2.8691 - 2.6638 1.00 2701 155 0.1388 0.1480 REMARK 3 6 2.6638 - 2.5070 1.00 2721 147 0.1449 0.1706 REMARK 3 7 2.5070 - 2.3816 1.00 2716 145 0.1463 0.1743 REMARK 3 8 2.3816 - 2.2780 1.00 2716 128 0.1391 0.1751 REMARK 3 9 2.2780 - 2.1904 1.00 2665 143 0.1375 0.1578 REMARK 3 10 2.1904 - 2.1148 1.00 2711 163 0.1394 0.1714 REMARK 3 11 2.1148 - 2.0488 1.00 2696 140 0.1383 0.1378 REMARK 3 12 2.0488 - 1.9902 1.00 2690 151 0.1439 0.1706 REMARK 3 13 1.9902 - 1.9379 1.00 2677 155 0.1433 0.1787 REMARK 3 14 1.9379 - 1.8906 1.00 2686 132 0.1456 0.1799 REMARK 3 15 1.8906 - 1.8476 1.00 2667 153 0.1494 0.1809 REMARK 3 16 1.8476 - 1.8083 1.00 2671 129 0.1512 0.1777 REMARK 3 17 1.8083 - 1.7722 1.00 2642 161 0.1489 0.1676 REMARK 3 18 1.7722 - 1.7388 1.00 2721 126 0.1587 0.1996 REMARK 3 19 1.7388 - 1.7077 1.00 2698 130 0.1636 0.1859 REMARK 3 20 1.7077 - 1.6788 1.00 2660 152 0.1688 0.2014 REMARK 3 21 1.6788 - 1.6517 1.00 2673 145 0.1706 0.2124 REMARK 3 22 1.6517 - 1.6263 1.00 2637 142 0.1752 0.2120 REMARK 3 23 1.6263 - 1.6024 1.00 2692 129 0.1807 0.2239 REMARK 3 24 1.6024 - 1.5798 1.00 2657 137 0.1882 0.1849 REMARK 3 25 1.5798 - 1.5585 0.99 2662 143 0.1948 0.2252 REMARK 3 26 1.5585 - 1.5382 0.98 2639 123 0.2109 0.2310 REMARK 3 27 1.5382 - 1.5190 0.94 2525 133 0.2324 0.2824 REMARK 3 28 1.5190 - 1.5007 0.86 2291 118 0.2466 0.2569 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 54.16 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.780 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.48 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.11830 REMARK 3 B22 (A**2) : 0.38840 REMARK 3 B33 (A**2) : -0.27020 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 4551 REMARK 3 ANGLE : 1.514 6330 REMARK 3 CHIRALITY : 0.094 696 REMARK 3 PLANARITY : 0.009 850 REMARK 3 DIHEDRAL : 17.007 1788 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2XU9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-OCT-10. REMARK 100 THE DEPOSITION ID IS D_1290045765. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : DOUBLE CRYSTAL CHANNEL CUT, REMARK 200 SI(111), 1M LONG RH COATED REMARK 200 TOROIDAL MIRROR FOR VERTICAL AND REMARK 200 HORIZONTAL FOCUSING. REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 78986 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 23.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 200 DATA REDUNDANCY : 11.40 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.4100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.9 REMARK 200 DATA REDUNDANCY IN SHELL : 9.90 REMARK 200 R MERGE FOR SHELL (I) : 0.40000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.120 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1KV7 REMARK 200 REMARK 200 REMARK: PHASES WERE OBTAINED BY THE COMBINATION OF SIGNALS REMARK 200 GENERATED BY MR AND SAD AT THE COOPER EDGE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5, 70% MPD REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.15850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.15850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 46.78900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.16950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 46.78900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.16950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 48.15850 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 46.78900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 55.16950 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 48.15850 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 46.78900 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 55.16950 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2173 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2178 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2298 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2301 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C5 MRD A 1481 O HOH A 2548 1.29 REMARK 500 O HOH A 2433 O HOH A 2434 1.29 REMARK 500 O HOH A 2139 O HOH A 2337 1.30 REMARK 500 O HOH A 2157 O HOH A 2528 1.34 REMARK 500 O HOH A 2378 O HOH A 2384 1.36 REMARK 500 O HOH A 2151 O HOH A 2152 1.44 REMARK 500 NE2 HIS A 396 CU CU A 1482 1.52 REMARK 500 SD MET A 301 NE2 HIS A 303 1.60 REMARK 500 C5 MPD A 1480 O HOH A 2297 1.60 REMARK 500 O HOH A 2279 O HOH A 2280 1.69 REMARK 500 O HOH A 2494 O HOH A 2498 1.71 REMARK 500 O HOH A 2494 O HOH A 2495 1.72 REMARK 500 C5 MPD A 1475 O HOH A 2542 1.73 REMARK 500 SD MET A 301 CD2 HIS A 303 1.77 REMARK 500 O4 MRD A 1470 O4 MPD A 1478 1.78 REMARK 500 O HOH A 2254 O HOH A 2260 1.78 REMARK 500 O HOH A 2105 O HOH A 2271 1.79 REMARK 500 O HOH A 2422 O HOH A 2424 1.80 REMARK 500 O HOH A 2138 O HOH A 2141 1.81 REMARK 500 C4 MPD A 1475 O HOH A 2275 1.86 REMARK 500 O THR A 338 O HOH A 2414 1.90 REMARK 500 O HOH A 2195 O HOH A 2197 1.91 REMARK 500 O HOH A 2259 O HOH A 2261 1.94 REMARK 500 O HOH A 2224 O HOH A 2523 1.98 REMARK 500 O HOH A 2389 O HOH A 2390 1.98 REMARK 500 O HOH A 2100 O HOH A 2246 2.07 REMARK 500 O HOH A 2006 O HOH A 2009 2.07 REMARK 500 O HOH A 2422 O HOH A 2477 2.10 REMARK 500 O HOH A 2084 O HOH A 2247 2.11 REMARK 500 O HOH A 2125 O HOH A 2319 2.13 REMARK 500 O HOH A 2054 O HOH A 2130 2.14 REMARK 500 O HOH A 2050 O HOH A 2126 2.14 REMARK 500 O HOH A 2024 O HOH A 2098 2.15 REMARK 500 C1 MPD A 1476 O HOH A 2545 2.17 REMARK 500 O HOH A 2255 O HOH A 2257 2.17 REMARK 500 OE2 GLU A 270 O HOH A 2331 2.17 REMARK 500 OD2 ASP A 106 O HOH A 2159 2.17 REMARK 500 O HOH A 2054 O HOH A 2055 2.17 REMARK 500 C4 MRD A 1481 O HOH A 2548 2.18 REMARK 500 O HOH A 2233 O HOH A 2234 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2125 O HOH A 2125 4545 2.06 REMARK 500 O HOH A 2034 O HOH A 2223 8445 2.08 REMARK 500 O HOH A 2429 O HOH A 2543 6445 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 394 C - N - CD ANGL. DEV. = -15.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 77 -2.56 77.62 REMARK 500 ARG A 77 -13.51 84.21 REMARK 500 PRO A 100 89.16 -69.99 REMARK 500 ILE A 101 -157.73 -126.65 REMARK 500 HIS A 137 53.02 -148.47 REMARK 500 HIS A 137 44.14 -143.09 REMARK 500 LEU A 151 149.22 -174.83 REMARK 500 ALA A 230 -22.45 -151.36 REMARK 500 ALA A 247 -160.56 -101.35 REMARK 500 MET A 301 175.29 51.09 REMARK 500 LEU A 333 -99.82 -116.73 REMARK 500 LEU A 333 -101.02 -116.73 REMARK 500 VAL A 399 -35.64 75.26 REMARK 500 ARG A 436 -97.49 -102.88 REMARK 500 ARG A 436 -97.49 -97.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 300 MET A 301 145.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A1482 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 95 NE2 REMARK 620 2 HOH A2138 O 72.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A1465 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 97 ND1 REMARK 620 2 HIS A 135 NE2 138.8 REMARK 620 3 HIS A 446 NE2 106.7 113.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A1464 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 137 NE2 REMARK 620 2 HIS A 398 NE2 102.4 REMARK 620 3 HIS A 444 NE2 112.8 118.5 REMARK 620 4 OH A1483 O 89.5 144.7 85.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A1463 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 393 ND1 REMARK 620 2 CYS A 445 SG 125.8 REMARK 620 3 HIS A 450 ND1 104.0 129.9 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 1463 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 1464 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 1465 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 1466 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MRD A 1467 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MRD A 1468 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MRD A 1469 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MRD A 1470 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MRD A 1471 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MRD A 1472 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MRD A 1473 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MRD A 1474 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 1475 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 1476 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 1477 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 1478 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MRD A 1479 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 1480 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MRD A 1481 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 1482 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OH A 1483 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE AT THE UNIPROT DEPOSIT Q4H436 POSITION 53 IS REMARK 999 OCCUPIED BY A LEUCINE BUT THE ELECTRON DENSITY CLEARLY REMARK 999 SUPPORTS THE PRESENCE OF AN ISOLEUCINE IN THIS POSITION DBREF 2XU9 A 24 462 UNP Q72HW2 Q72HW2_THET2 24 462 SEQADV 2XU9 ILE A 53 UNP Q72HW2 LEU 53 ENGINEERED MUTATION SEQRES 1 A 439 GLY PRO SER PHE PRO GLU PRO LYS VAL VAL ARG SER GLN SEQRES 2 A 439 GLY GLY LEU LEU SER LEU LYS LEU SER ALA THR PRO THR SEQRES 3 A 439 PRO LEU ALA ILE ALA GLY GLN ARG ALA THR LEU LEU THR SEQRES 4 A 439 TYR GLY GLY SER PHE PRO GLY PRO THR LEU ARG VAL ARG SEQRES 5 A 439 PRO ARG ASP THR VAL ARG LEU THR LEU GLU ASN ARG LEU SEQRES 6 A 439 PRO GLU PRO THR ASN LEU HIS TRP HIS GLY LEU PRO ILE SEQRES 7 A 439 SER PRO LYS VAL ASP ASP PRO PHE LEU GLU ILE PRO PRO SEQRES 8 A 439 GLY GLU SER TRP THR TYR GLU PHE THR VAL PRO LYS GLU SEQRES 9 A 439 LEU ALA GLY THR PHE TRP TYR HIS PRO HIS LEU HIS GLY SEQRES 10 A 439 ARG VAL ALA PRO GLN LEU PHE ALA GLY LEU LEU GLY ALA SEQRES 11 A 439 LEU VAL VAL GLU SER SER LEU ASP ALA ILE PRO GLU LEU SEQRES 12 A 439 ARG GLU ALA GLU GLU HIS LEU LEU VAL LEU LYS ASP LEU SEQRES 13 A 439 ALA LEU GLN GLY GLY ARG PRO ALA PRO HIS THR PRO MET SEQRES 14 A 439 ASP TRP MET ASN GLY LYS GLU GLY ASP LEU VAL LEU VAL SEQRES 15 A 439 ASN GLY ALA LEU ARG PRO THR LEU VAL ALA GLN LYS ALA SEQRES 16 A 439 THR LEU ARG LEU ARG LEU LEU ASN ALA SER ASN ALA ARG SEQRES 17 A 439 TYR TYR ARG LEU ALA LEU GLN ASP HIS PRO LEU TYR LEU SEQRES 18 A 439 ILE ALA ALA ASP GLY GLY PHE LEU GLU GLU PRO LEU GLU SEQRES 19 A 439 VAL SER GLU LEU LEU LEU ALA PRO GLY GLU ARG ALA GLU SEQRES 20 A 439 VAL LEU VAL ARG LEU ARG LYS GLU GLY ARG PHE LEU LEU SEQRES 21 A 439 GLN ALA LEU PRO TYR ASP ARG GLY ALA MET GLY MET MET SEQRES 22 A 439 ASP MET GLY GLY MET ALA HIS ALA MET PRO GLN GLY PRO SEQRES 23 A 439 SER ARG PRO GLU THR LEU LEU TYR LEU ILE ALA PRO LYS SEQRES 24 A 439 ASN PRO LYS PRO LEU PRO LEU PRO LYS ALA LEU SER PRO SEQRES 25 A 439 PHE PRO THR LEU PRO ALA PRO VAL VAL THR ARG ARG LEU SEQRES 26 A 439 VAL LEU THR GLU ASP MET MET ALA ALA ARG PHE PHE ILE SEQRES 27 A 439 ASN GLY GLN VAL PHE ASP HIS ARG ARG VAL ASP LEU LYS SEQRES 28 A 439 GLY GLN ALA GLN THR VAL GLU VAL TRP GLU VAL GLU ASN SEQRES 29 A 439 GLN GLY ASP MET ASP HIS PRO PHE HIS LEU HIS VAL HIS SEQRES 30 A 439 PRO PHE GLN VAL LEU SER VAL GLY GLY ARG PRO PHE PRO SEQRES 31 A 439 TYR ARG ALA TRP LYS ASP VAL VAL ASN LEU LYS ALA GLY SEQRES 32 A 439 GLU VAL ALA ARG LEU LEU VAL PRO LEU ARG GLU LYS GLY SEQRES 33 A 439 ARG THR VAL PHE HIS CYS HIS ILE VAL GLU HIS GLU ASP SEQRES 34 A 439 ARG GLY MET MET GLY VAL LEU GLU VAL GLY HET CU A1463 1 HET CU A1464 1 HET CU A1465 1 HET MPD A1466 8 HET MRD A1467 8 HET MRD A1468 8 HET MRD A1469 8 HET MRD A1470 8 HET MRD A1471 8 HET MRD A1472 8 HET MRD A1473 8 HET MRD A1474 8 HET MPD A1475 8 HET MPD A1476 8 HET MPD A1477 8 HET MPD A1478 8 HET MRD A1479 8 HET MPD A1480 8 HET MRD A1481 8 HET CU A1482 1 HET OH A1483 2 HETNAM CU COPPER (II) ION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM MRD (4R)-2-METHYLPENTANE-2,4-DIOL HETNAM OH HYDROXIDE ION FORMUL 2 CU 4(CU 2+) FORMUL 5 MPD 6(C6 H14 O2) FORMUL 6 MRD 10(C6 H14 O2) FORMUL 22 OH H O 1- FORMUL 23 HOH *549(H2 O) HELIX 1 1 ARG A 141 ALA A 148 1 8 HELIX 2 2 SER A 158 ALA A 162 5 5 HELIX 3 3 ILE A 163 GLU A 168 1 6 HELIX 4 4 THR A 190 GLY A 197 1 8 HELIX 5 5 ILE A 447 ARG A 453 1 7 SHEET 1 AA 5 VAL A 32 ARG A 34 0 SHEET 2 AA 5 THR A 71 VAL A 74 1 O THR A 71 N VAL A 33 SHEET 3 AA 5 GLY A 152 VAL A 156 1 O ALA A 153 N LEU A 72 SHEET 4 AA 5 GLY A 130 HIS A 135 -1 O GLY A 130 N VAL A 156 SHEET 5 AA 5 HIS A 95 HIS A 97 -1 O HIS A 95 N HIS A 135 SHEET 1 AB 4 GLN A 56 TYR A 63 0 SHEET 2 AB 4 LEU A 39 ILE A 53 -1 O THR A 47 N THR A 62 SHEET 3 AB 4 THR A 79 ASN A 86 1 O THR A 79 N LEU A 40 SHEET 4 AB 4 SER A 117 THR A 123 -1 O TRP A 118 N LEU A 84 SHEET 1 AC 6 LEU A 202 VAL A 205 0 SHEET 2 AC 6 GLU A 170 LEU A 179 -1 O LYS A 177 N LEU A 204 SHEET 3 AC 6 THR A 219 ASN A 226 1 O THR A 219 N GLU A 170 SHEET 4 AC 6 ARG A 268 ARG A 274 -1 O ALA A 269 N LEU A 224 SHEET 5 AC 6 LEU A 242 ALA A 247 -1 O TYR A 243 N LEU A 272 SHEET 6 AC 6 GLY A 250 VAL A 258 -1 O GLY A 250 N ALA A 247 SHEET 1 AD 2 LEU A 181 GLN A 182 0 SHEET 2 AD 2 ARG A 185 PRO A 186 -1 O ARG A 185 N GLN A 182 SHEET 1 AE 5 THR A 212 VAL A 214 0 SHEET 2 AE 5 GLU A 313 ALA A 320 1 O TYR A 317 N LEU A 213 SHEET 3 AE 5 GLY A 279 LEU A 286 -1 O GLY A 279 N ALA A 320 SHEET 4 AE 5 TYR A 233 LEU A 237 -1 O ARG A 234 N LEU A 286 SHEET 5 AE 5 LEU A 261 LEU A 263 -1 O LEU A 261 N LEU A 235 SHEET 1 AF 2 MET A 293 MET A 296 0 SHEET 2 AF 2 HIS A 303 PRO A 306 -1 O HIS A 303 N MET A 296 SHEET 1 AG 6 ARG A 358 ILE A 361 0 SHEET 2 AG 6 VAL A 344 ASP A 353 -1 O THR A 351 N PHE A 360 SHEET 3 AG 6 VAL A 380 ASN A 387 1 O VAL A 382 N ARG A 346 SHEET 4 AG 6 VAL A 428 PRO A 434 -1 O ALA A 429 N VAL A 385 SHEET 5 AG 6 GLN A 403 VAL A 407 -1 O GLN A 403 N LEU A 432 SHEET 6 AG 6 ARG A 410 PRO A 411 -1 O ARG A 410 N VAL A 407 SHEET 1 AH 5 LEU A 373 GLY A 375 0 SHEET 2 AH 5 MET A 456 VAL A 461 1 O VAL A 458 N LEU A 373 SHEET 3 AH 5 GLY A 439 CYS A 445 -1 O GLY A 439 N VAL A 461 SHEET 4 AH 5 HIS A 393 LEU A 397 -1 O HIS A 396 N HIS A 444 SHEET 5 AH 5 VAL A 420 LEU A 423 -1 O VAL A 421 N PHE A 395 LINK NE2 HIS A 95 CU CU A1482 1555 1555 1.73 LINK ND1 HIS A 97 CU CU A1465 1555 1555 1.95 LINK NE2 HIS A 135 CU CU A1465 1555 1555 2.01 LINK NE2AHIS A 137 CU CU A1464 1555 1555 1.90 LINK ND1 HIS A 393 CU CU A1463 1555 1555 2.06 LINK NE2 HIS A 398 CU CU A1464 1555 1555 1.75 LINK NE2 HIS A 444 CU CU A1464 1555 1555 1.92 LINK SG CYS A 445 CU CU A1463 1555 1555 2.12 LINK NE2 HIS A 446 CU CU A1465 1555 1555 2.09 LINK ND1 HIS A 450 CU CU A1463 1555 1555 2.14 LINK CU CU A1464 O OH A1483 1555 1555 2.21 LINK CU CU A1482 O HOH A2138 1555 1555 2.15 CISPEP 1 PHE A 67 PRO A 68 0 -8.95 CISPEP 2 MET A 301 ALA A 302 0 10.47 SITE 1 AC1 4 HIS A 393 CYS A 445 HIS A 450 MET A 455 SITE 1 AC2 7 HIS A 95 HIS A 137 HIS A 396 HIS A 398 SITE 2 AC2 7 HIS A 444 CU A1482 OH A1483 SITE 1 AC3 5 HIS A 97 TRP A 133 HIS A 135 HIS A 446 SITE 2 AC3 5 OH A1483 SITE 1 AC4 7 ASP A 248 LEU A 263 GLU A 267 ARG A 268 SITE 2 AC4 7 TYR A 414 LYS A 418 MRD A1471 SITE 1 AC5 4 GLN A 56 LEU A 339 ARG A 436 HOH A2073 SITE 1 AC6 3 PRO A 191 MET A 295 MET A 355 SITE 1 AC7 5 LYS A 104 THR A 212 ARG A 280 HOH A2537 SITE 2 AC7 5 HOH A2539 SITE 1 AC8 5 GLY A 140 TRP A 194 ASP A 452 ARG A 453 SITE 2 AC8 5 MPD A1478 SITE 1 AC9 6 LEU A 256 GLU A 260 LEU A 261 PRO A 413 SITE 2 AC9 6 MPD A1466 HOH A2540 SITE 1 BC1 5 GLU A 127 LEU A 128 SER A 334 HOH A2407 SITE 2 BC1 5 HOH A2541 SITE 1 BC2 6 GLU A 257 ARG A 276 PRO A 326 MPD A1480 SITE 2 BC2 6 HOH A2320 HOH A2395 SITE 1 BC3 4 PRO A 342 VAL A 343 VAL A 344 THR A 345 SITE 1 BC4 11 PRO A 28 GLU A 29 PHE A 67 ASN A 206 SITE 2 BC4 11 HOH A2007 HOH A2063 HOH A2090 HOH A2092 SITE 3 BC4 11 HOH A2275 HOH A2542 HOH A2543 SITE 1 BC5 10 PRO A 25 SER A 26 VAL A 214 GLN A 216 SITE 2 BC5 10 ASN A 362 GLN A 364 HOH A2279 HOH A2280 SITE 3 BC5 10 HOH A2544 HOH A2545 SITE 1 BC6 4 LYS A 31 LEU A 44 GLY A 64 HOH A2089 SITE 1 BC7 3 PRO A 191 ARG A 453 MRD A1470 SITE 1 BC8 5 SER A 26 GLN A 376 ALA A 377 GLN A 378 SITE 2 BC8 5 HOH A2002 SITE 1 BC9 7 ASP A 239 HIS A 240 ARG A 276 MRD A1473 SITE 2 BC9 7 HOH A2135 HOH A2294 HOH A2297 SITE 1 CC1 10 PRO A 144 PRO A 188 HIS A 189 TRP A 194 SITE 2 CC1 10 HOH A2131 HOH A2213 HOH A2249 HOH A2546 SITE 3 CC1 10 HOH A2547 HOH A2548 SITE 1 CC2 6 HIS A 95 HIS A 97 HIS A 396 HIS A 398 SITE 2 CC2 6 CU A1464 HOH A2138 SITE 1 CC3 8 HIS A 95 HIS A 135 HIS A 137 HIS A 444 SITE 2 CC3 8 HIS A 446 CU A1464 CU A1465 HOH A2549 CRYST1 93.578 110.339 96.317 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010686 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009063 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010382 0.00000