HEADER CELL CYCLE 04-NOV-10 2XWR TITLE CRYSTAL STRUCTURE OF THE DNA-BINDING DOMAIN OF HUMAN P53 WITH EXTENDED TITLE 2 N TERMINUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELLULAR TUMOR ANTIGEN P53; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: DNA-BINDING DOMAIN, RESIDUES 89-293; COMPND 5 SYNONYM: ANTIGEN NY-CO-13, PHOSPHOPROTEIN P53, TUMOR SUPPRESSOR P53; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CELL CYCLE, CANCER, TRANSCRIPTION FACTOR, APOPTOSIS EXPDTA X-RAY DIFFRACTION AUTHOR A.C.JOERGER,E.NATAN,A.R.FERSHT REVDAT 4 08-MAY-24 2XWR 1 REMARK LINK REVDAT 3 08-MAY-19 2XWR 1 REMARK REVDAT 2 01-JUN-11 2XWR 1 REVDAT JRNL REVDAT 1 30-MAR-11 2XWR 0 JRNL AUTH E.NATAN,C.BALOGLU,K.PAGEL,S.M.FREUND,N.MORGNER,C.V.ROBINSON, JRNL AUTH 2 A.R.FERSHT,A.C.JOERGER JRNL TITL INTERACTION OF THE P53 DNA-BINDING DOMAIN WITH ITS JRNL TITL 2 N-TERMINAL EXTENSION MODULATES THE STABILITY OF THE P53 JRNL TITL 3 TETRAMER. JRNL REF J.MOL.BIOL. V. 409 358 2011 JRNL REFN ISSN 0022-2836 JRNL PMID 21457718 JRNL DOI 10.1016/J.JMB.2011.03.047 REMARK 2 REMARK 2 RESOLUTION. 1.68 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.68 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 45797 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2273 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.8204 - 4.2268 0.96 2693 139 0.1598 0.1782 REMARK 3 2 4.2268 - 3.3576 0.99 2717 172 0.1515 0.1643 REMARK 3 3 3.3576 - 2.9339 1.00 2735 136 0.1696 0.1951 REMARK 3 4 2.9339 - 2.6660 1.00 2725 140 0.1721 0.2155 REMARK 3 5 2.6660 - 2.4751 1.00 2717 151 0.1830 0.2096 REMARK 3 6 2.4751 - 2.3293 1.00 2751 131 0.1775 0.2716 REMARK 3 7 2.3293 - 2.2127 1.00 2738 138 0.1753 0.2296 REMARK 3 8 2.2127 - 2.1165 1.00 2719 137 0.1708 0.1988 REMARK 3 9 2.1165 - 2.0350 1.00 2701 150 0.1770 0.2280 REMARK 3 10 2.0350 - 1.9648 1.00 2734 138 0.1700 0.2587 REMARK 3 11 1.9648 - 1.9034 1.00 2722 129 0.1724 0.2183 REMARK 3 12 1.9034 - 1.8490 1.00 2753 135 0.1769 0.2255 REMARK 3 13 1.8490 - 1.8004 1.00 2689 166 0.1855 0.2371 REMARK 3 14 1.8004 - 1.7564 1.00 2726 145 0.2078 0.2539 REMARK 3 15 1.7564 - 1.7165 1.00 2713 128 0.2307 0.2680 REMARK 3 16 1.7165 - 1.6800 0.99 2691 138 0.2594 0.3186 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.72 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 43.14 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.980 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.98 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.03320 REMARK 3 B22 (A**2) : -4.36820 REMARK 3 B33 (A**2) : 4.96840 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 9.06970 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3268 REMARK 3 ANGLE : 1.081 4451 REMARK 3 CHIRALITY : 0.079 484 REMARK 3 PLANARITY : 0.005 588 REMARK 3 DIHEDRAL : 11.737 1259 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2XWR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-NOV-10. REMARK 100 THE DEPOSITION ID IS D_1290045427. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97630 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46147 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.680 REMARK 200 RESOLUTION RANGE LOW (A) : 44.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.68 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.77 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.23000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SITTING DROP VAPOR DIFFUSION AT 17 REMARK 280 DEGREE C. PROTEIN SOLUTION: 5.4 MG/ML IN 25 MM SODIUM PHOSPHATE, REMARK 280 PH 7.2, 220 MM NACL, AND 5 MM DTT. RESERVOIR SOLUTION: 100 MM REMARK 280 BIS-TRIS, PH 5.5, 23% PEG 3350, 200 MM AMMONIUM SULFATE., VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.22500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 89 REMARK 465 SER A 90 REMARK 465 ARG A 290 REMARK 465 LYS A 291 REMARK 465 LYS A 292 REMARK 465 GLY A 293 REMARK 465 PRO B 89 REMARK 465 SER B 90 REMARK 465 LYS B 291 REMARK 465 LYS B 292 REMARK 465 GLY B 293 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 290 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 183 44.04 -102.27 REMARK 500 PHE A 212 -5.35 76.31 REMARK 500 ASN A 288 43.31 -86.64 REMARK 500 PHE B 212 -5.38 78.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2064 DISTANCE = 7.13 ANGSTROMS REMARK 525 HOH B2065 DISTANCE = 6.00 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 300 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 176 SG REMARK 620 2 HIS A 179 ND1 99.3 REMARK 620 3 CYS A 238 SG 114.2 105.3 REMARK 620 4 CYS A 242 SG 112.9 106.1 116.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 300 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 176 SG REMARK 620 2 HIS B 179 ND1 102.2 REMARK 620 3 CYS B 238 SG 109.9 91.5 REMARK 620 4 CYS B 238 SG 110.6 117.5 27.9 REMARK 620 5 CYS B 242 SG 113.4 109.8 125.3 103.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2BIQ RELATED DB: PDB REMARK 900 HUMAN P53 CORE DOMAIN MUTANT T123A-M133L-H168R-V203A- N239Y-R249S- REMARK 900 N268D REMARK 900 RELATED ID: 1DT7 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE C-TERMINAL NEGATIVE REGULATORY DOMAIN OF REMARK 900 P53 IN A COMPLEX WITH CA2+-BOUND S100B( BB) REMARK 900 RELATED ID: 2YBG RELATED DB: PDB REMARK 900 STRUCTURE OF LYS120-ACETYLATED P53 CORE DOMAIN REMARK 900 RELATED ID: 2J1X RELATED DB: PDB REMARK 900 HUMAN P53 CORE DOMAIN MUTANT M133L-V203A-Y220C-N239Y- N268D REMARK 900 RELATED ID: 1UOL RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HUMAN P53 CORE DOMAIN MUTANT M133L/V203A/ REMARK 900 N239Y/N268D AT 1.9 A RESOLUTION. REMARK 900 RELATED ID: 2FOJ RELATED DB: PDB REMARK 900 THE CRYSTAL STRUCURE OF THE N-TERMINAL DOMAIN OF HAUSP/ REMARK 900 USP7COMPLEXED WITH P53 PEPTIDE 364-367 REMARK 900 RELATED ID: 2B3G RELATED DB: PDB REMARK 900 P53N (FRAGMENT 33-60) BOUND TO RPA70N REMARK 900 RELATED ID: 2BIN RELATED DB: PDB REMARK 900 HUMAN P53 CORE DOMAIN MUTANT M133L-H168R-V203A-N239Y- N268D REMARK 900 RELATED ID: 1OLH RELATED DB: PDB REMARK 900 P53 (OLIGOMERIZATION DOMAIN) (NMR, 35 STRUCTURES) REMARK 900 RELATED ID: 1PES RELATED DB: PDB REMARK 900 TUMOR ANTIGEN P53 (TETRAMERIZATION DOMAIN) (P53TET) (NMR , REMARK 900 MINIMIZED AVERAGE STRUCTURE) REMARK 900 RELATED ID: 1TSR RELATED DB: PDB REMARK 900 P53 CORE DOMAIN IN COMPLEX WITH DEOXYRIBONUCLEIC ACID REMARK 900 RELATED ID: 2J21 RELATED DB: PDB REMARK 900 HUMAN P53 CORE DOMAIN MUTANT M133L-V203A-N239Y-N268D- R282W REMARK 900 RELATED ID: 2GS0 RELATED DB: PDB REMARK 900 NMR STRUCTURE OF THE COMPLEX BETWEEN THE PH DOMAIN OF THETFB1 REMARK 900 SUBUNIT FROM TFIIH AND THE ACTIVATION DOMAIN OF P53 REMARK 900 RELATED ID: 2J0Z RELATED DB: PDB REMARK 900 P53 TETRAMERIZATION DOMAIN WILD TYPE REMARK 900 RELATED ID: 1C26 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF P53 TETRAMERIZATION DOMAIN REMARK 900 RELATED ID: 2X0V RELATED DB: PDB REMARK 900 STRUCTURE OF THE P53 CORE DOMAIN MUTANT Y220C BOUND TO 4- REMARK 900 (TRIFLUOROMETHYL)BENZENE-1,2-DIAMINE REMARK 900 RELATED ID: 1SAL RELATED DB: PDB REMARK 900 HIGH RESOLUTION SOLUTION NMR STRUCTURE OF THE OLIGOMERIZATION REMARK 900 DOMAIN OF P53 BY MULTI-DIMENSIONAL NMR (SAD STRUCTURES) REMARK 900 RELATED ID: 1KZY RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE 53BP1 BRCT REGION COMPLEXED TOTUMOR REMARK 900 SUPPRESSOR P53 REMARK 900 RELATED ID: 1XQH RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A TERNARY COMPLEX OF THEMETHYLTRANSFERASE SET9 REMARK 900 (ALSO KNOWN AS SET7/9) WITH A P53PEPTIDE AND SAH REMARK 900 RELATED ID: 2FEJ RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF HUMAN P53 DNA BINDING DOMAIN. REMARK 900 RELATED ID: 2AHI RELATED DB: PDB REMARK 900 STRUCTURAL BASIS OF DNA RECOGNITION BY P53 TETRAMERS( COMPLEX III) REMARK 900 RELATED ID: 1A1U RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE DETERMINATION OF A P53 MUTANT DIMERIZATION REMARK 900 DOMAIN, NMR, MINIMIZED AVERAGE STRUCTURE REMARK 900 RELATED ID: 3SAK RELATED DB: PDB REMARK 900 HIGH RESOLUTION SOLUTION NMR STRUCTURE OF THE OLIGOMERIZATION REMARK 900 DOMAIN OF P53 BY MULTI-DIMENSIONAL NMR (SAC STRUCTURES) REMARK 900 RELATED ID: 2WGX RELATED DB: PDB REMARK 900 HUMAN P53 CORE DOMAIN MUTANT M133L-V203A-Y236F-N239Y- T253I-N268D REMARK 900 RELATED ID: 1SAF RELATED DB: PDB REMARK 900 HIGH RESOLUTION SOLUTION NMR STRUCTURE OF THE OLIGOMERIZATION REMARK 900 DOMAIN OF P53 BY MULTI-DIMENSIONAL NMR (SAD STRUCTURES) REMARK 900 RELATED ID: 2FOO RELATED DB: PDB REMARK 900 THE CRYSTAL STRUCURE OF THE N-TERMINAL DOMAIN OF HAUSP/ REMARK 900 USP7COMPLEXED WITH P53 PEPTIDE 359-362 REMARK 900 RELATED ID: 2BIO RELATED DB: PDB REMARK 900 HUMAN P53 CORE DOMAIN MUTANT M133L-V203A-N239Y-R249S- N268D REMARK 900 RELATED ID: 1OLG RELATED DB: PDB REMARK 900 P53 (OLIGOMERIZATION DOMAIN) (NMR, MINIMIZED AVERAGE STRUCTURE) REMARK 900 RELATED ID: 2J11 RELATED DB: PDB REMARK 900 P53 TETRAMERIZATION DOMAIN MUTANT Y327S T329G Q331G REMARK 900 RELATED ID: 2BIP RELATED DB: PDB REMARK 900 HUMAN P53 CORE DOMAIN MUTANT M133L-H168R-V203A-N239Y- R249S-N268D REMARK 900 RELATED ID: 1PET RELATED DB: PDB REMARK 900 TUMOR ANTIGEN P53 (TETRAMERIZATION DOMAIN) (P53TET) (NMR , 19 REMARK 900 STRUCTURES) REMARK 900 RELATED ID: 1JSP RELATED DB: PDB REMARK 900 NMR STRUCTURE OF CBP BROMODOMAIN IN COMPLEX WITH P53 PEPTIDE REMARK 900 RELATED ID: 2J1Y RELATED DB: PDB REMARK 900 HUMAN P53 CORE DOMAIN MUTANT M133L-V203A-N239Y-G245S- N268D REMARK 900 RELATED ID: 1MA3 RELATED DB: PDB REMARK 900 STRUCTURE OF A SIR2 ENZYME BOUND TO AN ACETYLATED P53PEPTIDE REMARK 900 RELATED ID: 2X0W RELATED DB: PDB REMARK 900 STRUCTURE OF THE P53 CORE DOMAIN MUTANT Y220C BOUND TO 5,6- REMARK 900 DIMETHOXY-2-METHYLBENZOTHIAZOLE REMARK 900 RELATED ID: 2VUK RELATED DB: PDB REMARK 900 STRUCTURE OF THE P53 CORE DOMAIN MUTANT Y220C BOUND TO THE REMARK 900 STABILIZING SMALL-MOLECULE DRUG PHIKAN083 REMARK 900 RELATED ID: 1AIE RELATED DB: PDB REMARK 900 P53 TETRAMERIZATION DOMAIN CRYSTAL STRUCTURE REMARK 900 RELATED ID: 2H1L RELATED DB: PDB REMARK 900 THE STRUCTURE OF THE ONCOPROTEIN SV40 LARGE T ANTIGEN ANDP53 TUMOR REMARK 900 SUPPRESSOR COMPLEX REMARK 900 RELATED ID: 1SAJ RELATED DB: PDB REMARK 900 HIGH RESOLUTION SOLUTION NMR STRUCTURE OF THE OLIGOMERIZATION REMARK 900 DOMAIN OF P53 BY MULTI-DIMENSIONAL NMR (SAD STRUCTURES) REMARK 900 RELATED ID: 1TUP RELATED DB: PDB REMARK 900 TUMOR SUPPRESSOR P53 COMPLEXED WITH DEOXYRIBONUCLEIC ACID REMARK 900 RELATED ID: 1HS5 RELATED DB: PDB REMARK 900 NMR SOLUTION STRUCTURE OF DESIGNED P53 DIMER REMARK 900 RELATED ID: 2X0U RELATED DB: PDB REMARK 900 STRUCTURE OF THE P53 CORE DOMAIN MUTANT Y220C BOUND TO A 2-AMINO REMARK 900 SUBSTITUTED BENZOTHIAZOLE SCAFFOLD REMARK 900 RELATED ID: 2ATA RELATED DB: PDB REMARK 900 STRUCTURAL BASIS OF DNA RECOGNITION BY P53 TETRAMERS( COMPLEX II) REMARK 900 RELATED ID: 1YCQ RELATED DB: PDB REMARK 900 XENOPUS LAEVIS MDM2 BOUND TO THE TRANSACTIVATION DOMAIN OF HUMAN P53 REMARK 900 RELATED ID: 1GZH RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE BRCT DOMAINS OF HUMAN 53BP1 BOUND TO THE REMARK 900 P53 TUMOR SUPRESSOR REMARK 900 RELATED ID: 1SAH RELATED DB: PDB REMARK 900 HIGH RESOLUTION SOLUTION NMR STRUCTURE OF THE OLIGOMERIZATION REMARK 900 DOMAIN OF P53 BY MULTI-DIMENSIONAL NMR (SAD STRUCTURES) REMARK 900 RELATED ID: 1YCR RELATED DB: PDB REMARK 900 MDM2 BOUND TO THE TRANSACTIVATION DOMAIN OF P53 REMARK 900 RELATED ID: 2BIM RELATED DB: PDB REMARK 900 HUMAN P53 CORE DOMAIN MUTANT M133L-V203A-N239Y-N268D- R273H REMARK 900 RELATED ID: 2J10 RELATED DB: PDB REMARK 900 P53 TETRAMERIZATION DOMAIN MUTANT T329F Q331K REMARK 900 RELATED ID: 1SAK RELATED DB: PDB REMARK 900 HIGH RESOLUTION SOLUTION NMR STRUCTURE OF THE OLIGOMERIZATION REMARK 900 DOMAIN OF P53 BY MULTI-DIMENSIONAL NMR (SAC STRUCTURES) REMARK 900 RELATED ID: 2ADY RELATED DB: PDB REMARK 900 STRUCTURAL BASIS OF DNA RECOGNITION BY P53 TETRAMERS( COMPLEX IV) REMARK 900 RELATED ID: 1SAE RELATED DB: PDB REMARK 900 HIGH RESOLUTION SOLUTION NMR STRUCTURE OF THE OLIGOMERIZATION REMARK 900 DOMAIN OF P53 BY MULTI-DIMENSIONAL NMR (SAC STRUCTURES) REMARK 900 RELATED ID: 2J1Z RELATED DB: PDB REMARK 900 HUMAN P53 CORE DOMAIN MUTANT M133L-V203A-N239Y-N268D- F270L REMARK 900 RELATED ID: 1YCS RELATED DB: PDB REMARK 900 P53-53BP2 COMPLEX REMARK 900 RELATED ID: 2AC0 RELATED DB: PDB REMARK 900 STRUCTURAL BASIS OF DNA RECOGNITION BY P53 TETRAMERS( COMPLEX I) REMARK 900 RELATED ID: 2J20 RELATED DB: PDB REMARK 900 HUMAN P53 CORE DOMAIN MUTANT M133L-V203A-N239Y-N268D- R273C REMARK 900 RELATED ID: 1H26 RELATED DB: PDB REMARK 900 CDK2/CYCLINA IN COMPLEX WITH AN 11-RESIDUE RECRUITMENT PEPTIDE FROM REMARK 900 P53 REMARK 900 RELATED ID: 2J1W RELATED DB: PDB REMARK 900 HUMAN P53 CORE DOMAIN MUTANT M133L-V143A-V203A-N239Y- N268D DBREF 2XWR A 89 293 UNP P04637 P53_HUMAN 89 293 DBREF 2XWR B 89 293 UNP P04637 P53_HUMAN 89 293 SEQRES 1 A 205 PRO SER TRP PRO LEU SER SER SER VAL PRO SER GLN LYS SEQRES 2 A 205 THR TYR GLN GLY SER TYR GLY PHE ARG LEU GLY PHE LEU SEQRES 3 A 205 HIS SER GLY THR ALA LYS SER VAL THR CYS THR TYR SER SEQRES 4 A 205 PRO ALA LEU ASN LYS MET PHE CYS GLN LEU ALA LYS THR SEQRES 5 A 205 CYS PRO VAL GLN LEU TRP VAL ASP SER THR PRO PRO PRO SEQRES 6 A 205 GLY THR ARG VAL ARG ALA MET ALA ILE TYR LYS GLN SER SEQRES 7 A 205 GLN HIS MET THR GLU VAL VAL ARG ARG CYS PRO HIS HIS SEQRES 8 A 205 GLU ARG CYS SER ASP SER ASP GLY LEU ALA PRO PRO GLN SEQRES 9 A 205 HIS LEU ILE ARG VAL GLU GLY ASN LEU ARG VAL GLU TYR SEQRES 10 A 205 LEU ASP ASP ARG ASN THR PHE ARG HIS SER VAL VAL VAL SEQRES 11 A 205 PRO TYR GLU PRO PRO GLU VAL GLY SER ASP CYS THR THR SEQRES 12 A 205 ILE HIS TYR ASN TYR MET CYS ASN SER SER CYS MET GLY SEQRES 13 A 205 GLY MET ASN ARG ARG PRO ILE LEU THR ILE ILE THR LEU SEQRES 14 A 205 GLU ASP SER SER GLY ASN LEU LEU GLY ARG ASN SER PHE SEQRES 15 A 205 GLU VAL ARG VAL CYS ALA CYS PRO GLY ARG ASP ARG ARG SEQRES 16 A 205 THR GLU GLU GLU ASN LEU ARG LYS LYS GLY SEQRES 1 B 205 PRO SER TRP PRO LEU SER SER SER VAL PRO SER GLN LYS SEQRES 2 B 205 THR TYR GLN GLY SER TYR GLY PHE ARG LEU GLY PHE LEU SEQRES 3 B 205 HIS SER GLY THR ALA LYS SER VAL THR CYS THR TYR SER SEQRES 4 B 205 PRO ALA LEU ASN LYS MET PHE CYS GLN LEU ALA LYS THR SEQRES 5 B 205 CYS PRO VAL GLN LEU TRP VAL ASP SER THR PRO PRO PRO SEQRES 6 B 205 GLY THR ARG VAL ARG ALA MET ALA ILE TYR LYS GLN SER SEQRES 7 B 205 GLN HIS MET THR GLU VAL VAL ARG ARG CYS PRO HIS HIS SEQRES 8 B 205 GLU ARG CYS SER ASP SER ASP GLY LEU ALA PRO PRO GLN SEQRES 9 B 205 HIS LEU ILE ARG VAL GLU GLY ASN LEU ARG VAL GLU TYR SEQRES 10 B 205 LEU ASP ASP ARG ASN THR PHE ARG HIS SER VAL VAL VAL SEQRES 11 B 205 PRO TYR GLU PRO PRO GLU VAL GLY SER ASP CYS THR THR SEQRES 12 B 205 ILE HIS TYR ASN TYR MET CYS ASN SER SER CYS MET GLY SEQRES 13 B 205 GLY MET ASN ARG ARG PRO ILE LEU THR ILE ILE THR LEU SEQRES 14 B 205 GLU ASP SER SER GLY ASN LEU LEU GLY ARG ASN SER PHE SEQRES 15 B 205 GLU VAL ARG VAL CYS ALA CYS PRO GLY ARG ASP ARG ARG SEQRES 16 B 205 THR GLU GLU GLU ASN LEU ARG LYS LYS GLY HET ZN A 300 1 HET ZN B 300 1 HETNAM ZN ZINC ION FORMUL 3 ZN 2(ZN 2+) FORMUL 5 HOH *512(H2 O) HELIX 1 1 GLN A 165 MET A 169 5 5 HELIX 2 2 CYS A 176 CYS A 182 1 7 HELIX 3 3 CYS A 277 ASN A 288 1 12 HELIX 4 4 GLN B 165 MET B 169 5 5 HELIX 5 5 CYS B 176 CYS B 182 1 7 HELIX 6 6 CYS B 277 ARG B 290 1 14 SHEET 1 AA 4 ARG A 110 GLY A 112 0 SHEET 2 AA 4 CYS A 141 TRP A 146 -1 O GLN A 144 N GLY A 112 SHEET 3 AA 4 THR A 230 TYR A 236 -1 O THR A 230 N LEU A 145 SHEET 4 AA 4 ILE A 195 VAL A 197 -1 O ARG A 196 N ASN A 235 SHEET 1 AB 7 CYS A 124 SER A 127 0 SHEET 2 AB 7 LYS A 132 CYS A 135 -1 O LYS A 132 N SER A 127 SHEET 3 AB 7 LEU A 264 VAL A 274 1 O GLU A 271 N MET A 133 SHEET 4 AB 7 ILE A 251 GLU A 258 -1 O ILE A 251 N VAL A 272 SHEET 5 AB 7 ARG A 156 TYR A 163 -1 O ARG A 156 N GLU A 258 SHEET 6 AB 7 HIS A 214 PRO A 219 -1 O VAL A 216 N ALA A 159 SHEET 7 AB 7 GLU A 204 ASP A 207 -1 O GLU A 204 N VAL A 217 SHEET 1 BA 4 ARG B 110 GLY B 112 0 SHEET 2 BA 4 CYS B 141 TRP B 146 -1 O GLN B 144 N GLY B 112 SHEET 3 BA 4 THR B 230 TYR B 236 -1 O THR B 230 N LEU B 145 SHEET 4 BA 4 ILE B 195 VAL B 197 -1 O ARG B 196 N ASN B 235 SHEET 1 BB 7 CYS B 124 SER B 127 0 SHEET 2 BB 7 LYS B 132 CYS B 135 -1 O LYS B 132 N SER B 127 SHEET 3 BB 7 LEU B 264 VAL B 274 1 O GLU B 271 N MET B 133 SHEET 4 BB 7 ILE B 251 GLU B 258 -1 O ILE B 251 N VAL B 272 SHEET 5 BB 7 ARG B 156 TYR B 163 -1 O ARG B 156 N GLU B 258 SHEET 6 BB 7 HIS B 214 PRO B 219 -1 O VAL B 216 N ALA B 159 SHEET 7 BB 7 GLU B 204 ASP B 207 -1 O GLU B 204 N VAL B 217 LINK SG CYS A 176 ZN ZN A 300 1555 1555 2.34 LINK ND1 HIS A 179 ZN ZN A 300 1555 1555 2.19 LINK SG CYS A 238 ZN ZN A 300 1555 1555 2.36 LINK SG CYS A 242 ZN ZN A 300 1555 1555 2.24 LINK SG CYS B 176 ZN ZN B 300 1555 1555 2.32 LINK ND1 HIS B 179 ZN ZN B 300 1555 1555 1.80 LINK SG BCYS B 238 ZN ZN B 300 1555 1555 2.50 LINK SG ACYS B 238 ZN ZN B 300 1555 1555 2.38 LINK SG CYS B 242 ZN ZN B 300 1555 1555 2.34 SITE 1 AC1 4 CYS A 176 HIS A 179 CYS A 238 CYS A 242 SITE 1 AC2 4 CYS B 176 HIS B 179 CYS B 238 CYS B 242 CRYST1 51.500 68.450 58.890 90.00 99.46 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019417 0.000000 0.003235 0.00000 SCALE2 0.000000 0.014609 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017215 0.00000