HEADER OXIDOREDUCTASE 12-NOV-10 2XXZ TITLE CRYSTAL STRUCTURE OF THE HUMAN JMJD3 JUMONJI DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSINE-SPECIFIC DEMETHYLASE 6B; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: JUMONJI DOMAIN, RESIDUES 1173-1502; COMPND 5 SYNONYM: JMJD3, JMJC DOMAIN-CONTAINING PROTEIN 3, JUMONJI DOMAIN- COMPND 6 CONTAINING PROTEIN 3, LYSINE DEMETHYLASE 6B; COMPND 7 EC: 1.14.11.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-R3-PRARE2; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS OXIDOREDUCTASE, HISTONE DEMETHYLATION, OXYGENASE, CHROMATIN KEYWDS 2 MODIFICATION EXPDTA X-RAY DIFFRACTION AUTHOR K.H.CHE,W.W.YUE,T.KROJER,J.R.C.MUNIZ,S.S.NG,A.TUMBER,M.DANIEL, AUTHOR 2 N.BURGESS-BROWN,P.SAVITSKY,E.UGOCHUKWU,P.FILIPPAKOPOULOS, AUTHOR 3 C.ARROWSMITH,J.WEIGELT,A.EDWARDS,C.BOUNTRA,U.OPPERMANN REVDAT 4 24-JAN-18 2XXZ 1 JRNL REVDAT 3 14-JAN-15 2XXZ 1 REMARK VERSN FORMUL REVDAT 2 01-DEC-10 2XXZ 1 JRNL REVDAT 1 24-NOV-10 2XXZ 0 JRNL AUTH K.H.CHE,W.W.YUE,T.KROJER,J.R.C.MUNIZ,S.S.NG,A.TUMBER, JRNL AUTH 2 M.DANIEL,N.BURGESS-BROWN,P.SAVITSKY,F.VON DELFT,E.UGOCHUKWU, JRNL AUTH 3 P.FILIPPAKOPOULOS,C.ARROWSMITH,J.WEIGELT,A.EDWARDS, JRNL AUTH 4 C.BOUNTRA,U.OPPERMANN JRNL TITL CRYSTAL STRUCTURE OF THE HUMAN JMJD3 JUMONJI DOMAIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.16 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 61100 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3016 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4968 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.60 REMARK 3 BIN R VALUE (WORKING SET) : 0.3330 REMARK 3 BIN FREE R VALUE SET COUNT : 265 REMARK 3 BIN FREE R VALUE : 0.3480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4612 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 319 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.19000 REMARK 3 B22 (A**2) : 1.26000 REMARK 3 B33 (A**2) : -1.45000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.103 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.102 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.079 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.236 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4906 ; 0.013 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 3250 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6714 ; 1.351 ; 1.931 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7900 ; 1.053 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 603 ; 5.971 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 232 ;33.913 ;24.095 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 761 ;13.374 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;20.631 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 723 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5506 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1006 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2949 ; 1.688 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1178 ; 0.404 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4804 ; 2.871 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1957 ; 4.105 ; 7.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1902 ; 6.069 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1175 A 1212 REMARK 3 ORIGIN FOR THE GROUP (A): 49.9007 48.2989 -13.8463 REMARK 3 T TENSOR REMARK 3 T11: 0.1221 T22: 0.1863 REMARK 3 T33: 0.1533 T12: 0.0021 REMARK 3 T13: 0.0054 T23: -0.0150 REMARK 3 L TENSOR REMARK 3 L11: 0.9421 L22: 0.9109 REMARK 3 L33: 1.5247 L12: 0.4975 REMARK 3 L13: -0.0145 L23: -0.5395 REMARK 3 S TENSOR REMARK 3 S11: -0.0088 S12: 0.0763 S13: -0.0191 REMARK 3 S21: -0.0143 S22: -0.0187 S23: -0.0221 REMARK 3 S31: 0.1225 S32: 0.0794 S33: 0.0275 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1213 A 1246 REMARK 3 ORIGIN FOR THE GROUP (A): 51.9917 54.4655 10.4149 REMARK 3 T TENSOR REMARK 3 T11: 0.0821 T22: 0.2205 REMARK 3 T33: 0.1761 T12: 0.0026 REMARK 3 T13: -0.0006 T23: 0.0065 REMARK 3 L TENSOR REMARK 3 L11: 0.9288 L22: 0.6320 REMARK 3 L33: 2.1837 L12: 0.2186 REMARK 3 L13: 0.0690 L23: -0.4078 REMARK 3 S TENSOR REMARK 3 S11: -0.0125 S12: -0.0564 S13: 0.0542 REMARK 3 S21: 0.0783 S22: 0.0089 S23: 0.0193 REMARK 3 S31: -0.1193 S32: -0.0452 S33: 0.0037 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1247 A 1266 REMARK 3 ORIGIN FOR THE GROUP (A): 50.3588 26.0087 9.8115 REMARK 3 T TENSOR REMARK 3 T11: 0.6595 T22: 0.2147 REMARK 3 T33: 0.1692 T12: 0.1830 REMARK 3 T13: 0.0368 T23: 0.0634 REMARK 3 L TENSOR REMARK 3 L11: 6.2658 L22: 3.2935 REMARK 3 L33: 3.9547 L12: -0.6355 REMARK 3 L13: 1.1018 L23: -2.7949 REMARK 3 S TENSOR REMARK 3 S11: -0.2004 S12: -0.5539 S13: -0.5901 REMARK 3 S21: 0.1186 S22: 0.1108 S23: -0.0687 REMARK 3 S31: 0.9193 S32: 0.2853 S33: 0.0895 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1267 A 1325 REMARK 3 ORIGIN FOR THE GROUP (A): 57.1112 43.7475 18.2481 REMARK 3 T TENSOR REMARK 3 T11: 0.1433 T22: 0.2251 REMARK 3 T33: 0.1621 T12: -0.0005 REMARK 3 T13: 0.0015 T23: 0.0230 REMARK 3 L TENSOR REMARK 3 L11: 2.8404 L22: 1.6504 REMARK 3 L33: 0.8267 L12: 0.7802 REMARK 3 L13: 0.2240 L23: -0.2082 REMARK 3 S TENSOR REMARK 3 S11: -0.0158 S12: -0.1324 S13: -0.1712 REMARK 3 S21: 0.1060 S22: 0.0501 S23: -0.0792 REMARK 3 S31: 0.1585 S32: 0.0094 S33: -0.0343 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1326 A 1493 REMARK 3 ORIGIN FOR THE GROUP (A): 43.9322 46.4734 0.7549 REMARK 3 T TENSOR REMARK 3 T11: 0.0967 T22: 0.1790 REMARK 3 T33: 0.1737 T12: -0.0196 REMARK 3 T13: 0.0058 T23: 0.0067 REMARK 3 L TENSOR REMARK 3 L11: 0.4915 L22: 0.4974 REMARK 3 L33: 1.3970 L12: -0.2375 REMARK 3 L13: 0.2676 L23: -0.0337 REMARK 3 S TENSOR REMARK 3 S11: 0.0089 S12: -0.0481 S13: -0.0337 REMARK 3 S21: 0.0388 S22: 0.0002 S23: 0.0571 REMARK 3 S31: 0.1048 S32: -0.1377 S33: -0.0091 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1175 B 1214 REMARK 3 ORIGIN FOR THE GROUP (A): 45.1405 48.7691 -24.7710 REMARK 3 T TENSOR REMARK 3 T11: 0.1437 T22: 0.2070 REMARK 3 T33: 0.1441 T12: -0.0160 REMARK 3 T13: 0.0144 T23: -0.0120 REMARK 3 L TENSOR REMARK 3 L11: 0.7773 L22: 1.5465 REMARK 3 L33: 2.0369 L12: -0.3633 REMARK 3 L13: -0.0048 L23: 0.4381 REMARK 3 S TENSOR REMARK 3 S11: 0.0240 S12: -0.0274 S13: 0.0344 REMARK 3 S21: 0.0251 S22: -0.0574 S23: 0.0768 REMARK 3 S31: 0.1793 S32: -0.1424 S33: 0.0334 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1215 B 1251 REMARK 3 ORIGIN FOR THE GROUP (A): 42.5983 54.9251 -48.0549 REMARK 3 T TENSOR REMARK 3 T11: 0.2845 T22: 0.2245 REMARK 3 T33: 0.1440 T12: -0.0666 REMARK 3 T13: -0.0699 T23: 0.0285 REMARK 3 L TENSOR REMARK 3 L11: 1.5921 L22: 2.1619 REMARK 3 L33: 1.9935 L12: 1.7165 REMARK 3 L13: 0.8351 L23: 0.4508 REMARK 3 S TENSOR REMARK 3 S11: -0.3125 S12: 0.2302 S13: 0.1558 REMARK 3 S21: -0.5474 S22: 0.2617 S23: 0.2052 REMARK 3 S31: -0.0721 S32: -0.0632 S33: 0.0507 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1252 B 1354 REMARK 3 ORIGIN FOR THE GROUP (A): 42.3729 48.8428 -49.7312 REMARK 3 T TENSOR REMARK 3 T11: 0.2733 T22: 0.2152 REMARK 3 T33: 0.0858 T12: -0.0602 REMARK 3 T13: -0.0074 T23: -0.0123 REMARK 3 L TENSOR REMARK 3 L11: 1.5628 L22: 2.4398 REMARK 3 L33: 1.5072 L12: 1.3623 REMARK 3 L13: 0.6305 L23: 0.7672 REMARK 3 S TENSOR REMARK 3 S11: -0.2874 S12: 0.2774 S13: 0.0317 REMARK 3 S21: -0.6007 S22: 0.2210 S23: 0.0365 REMARK 3 S31: -0.1097 S32: -0.0194 S33: 0.0664 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1355 B 1484 REMARK 3 ORIGIN FOR THE GROUP (A): 44.9821 40.8140 -38.8798 REMARK 3 T TENSOR REMARK 3 T11: 0.2052 T22: 0.1149 REMARK 3 T33: 0.1349 T12: -0.0051 REMARK 3 T13: 0.0002 T23: -0.0142 REMARK 3 L TENSOR REMARK 3 L11: 0.4453 L22: 1.3847 REMARK 3 L33: 1.9709 L12: 0.0974 REMARK 3 L13: 0.4831 L23: 0.1002 REMARK 3 S TENSOR REMARK 3 S11: -0.0194 S12: 0.0481 S13: -0.0411 REMARK 3 S21: -0.1735 S22: 0.0302 S23: 0.0014 REMARK 3 S31: 0.1962 S32: 0.0161 S33: -0.0108 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1485 B 1499 REMARK 3 ORIGIN FOR THE GROUP (A): 63.5671 58.4688 -24.1731 REMARK 3 T TENSOR REMARK 3 T11: 0.1075 T22: 0.2649 REMARK 3 T33: 0.2163 T12: -0.0099 REMARK 3 T13: -0.0202 T23: 0.0250 REMARK 3 L TENSOR REMARK 3 L11: 2.0776 L22: 3.7115 REMARK 3 L33: 5.5379 L12: 0.4430 REMARK 3 L13: 2.1406 L23: 0.4130 REMARK 3 S TENSOR REMARK 3 S11: -0.0369 S12: 0.2432 S13: -0.0511 REMARK 3 S21: -0.0560 S22: -0.1332 S23: -0.2793 REMARK 3 S31: -0.3745 S32: 0.5131 S33: 0.1701 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2XXZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-NOV-10. REMARK 100 THE DEPOSITION ID IS D_1290046225. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61104 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 29.160 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.96000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.37850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.84900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.71550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 79.84900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.37850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.71550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1171 REMARK 465 MET A 1172 REMARK 465 LEU A 1173 REMARK 465 PRO A 1174 REMARK 465 LYS A 1293 REMARK 465 GLU A 1294 REMARK 465 SER A 1295 REMARK 465 GLU A 1296 REMARK 465 ASP A 1297 REMARK 465 GLU A 1298 REMARK 465 GLU A 1299 REMARK 465 SER A 1300 REMARK 465 GLU A 1301 REMARK 465 GLU A 1302 REMARK 465 PRO A 1303 REMARK 465 ASP A 1304 REMARK 465 SER A 1305 REMARK 465 THR A 1306 REMARK 465 THR A 1307 REMARK 465 GLY A 1308 REMARK 465 THR A 1309 REMARK 465 PRO A 1310 REMARK 465 PRO A 1311 REMARK 465 SER A 1312 REMARK 465 SER A 1313 REMARK 465 ALA A 1314 REMARK 465 PRO A 1315 REMARK 465 ASP A 1316 REMARK 465 PRO A 1317 REMARK 465 LYS A 1318 REMARK 465 ASN A 1319 REMARK 465 LEU A 1494 REMARK 465 GLU A 1495 REMARK 465 ARG A 1496 REMARK 465 TYR A 1497 REMARK 465 GLU A 1498 REMARK 465 TRP A 1499 REMARK 465 ASN A 1500 REMARK 465 GLU A 1501 REMARK 465 VAL A 1502 REMARK 465 SER B 1171 REMARK 465 MET B 1172 REMARK 465 LEU B 1173 REMARK 465 PRO B 1174 REMARK 465 GLU B 1291 REMARK 465 GLU B 1292 REMARK 465 LYS B 1293 REMARK 465 GLU B 1294 REMARK 465 SER B 1295 REMARK 465 GLU B 1296 REMARK 465 ASP B 1297 REMARK 465 GLU B 1298 REMARK 465 GLU B 1299 REMARK 465 SER B 1300 REMARK 465 GLU B 1301 REMARK 465 GLU B 1302 REMARK 465 PRO B 1303 REMARK 465 ASP B 1304 REMARK 465 SER B 1305 REMARK 465 THR B 1306 REMARK 465 THR B 1307 REMARK 465 GLY B 1308 REMARK 465 THR B 1309 REMARK 465 PRO B 1310 REMARK 465 PRO B 1311 REMARK 465 SER B 1312 REMARK 465 SER B 1313 REMARK 465 ALA B 1314 REMARK 465 PRO B 1315 REMARK 465 ASP B 1316 REMARK 465 PRO B 1317 REMARK 465 LYS B 1318 REMARK 465 ASN B 1319 REMARK 465 GLY B 1357 REMARK 465 ASN B 1358 REMARK 465 MET B 1359 REMARK 465 LEU B 1360 REMARK 465 SER B 1361 REMARK 465 HIS B 1362 REMARK 465 VAL B 1363 REMARK 465 GLY B 1364 REMARK 465 HIS B 1365 REMARK 465 THR B 1366 REMARK 465 ASN B 1500 REMARK 465 GLU B 1501 REMARK 465 VAL B 1502 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A1175 CG CD NE CZ NH1 NH2 REMARK 470 LYS A1177 CE NZ REMARK 470 ARG A1260 NE CZ NH1 NH2 REMARK 470 GLU A1292 CG CD OE1 OE2 REMARK 470 ARG B1175 NE CZ NH1 NH2 REMARK 470 GLU B1176 CG CD OE1 OE2 REMARK 470 ARG B1260 CG CD NE CZ NH1 NH2 REMARK 470 HIS B1320 CG ND1 CD2 CE1 NE2 REMARK 470 THR B1356 OG1 CG2 REMARK 470 LEU B1368 CD1 CD2 REMARK 470 GLU B1498 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 2018 O HOH B 2019 1.82 REMARK 500 O HOH A 2019 O HOH B 2018 1.87 REMARK 500 O HOH B 2023 O HOH B 2140 2.02 REMARK 500 N LEU B 1215 O HOH B 2030 2.04 REMARK 500 O HOH A 2127 O HOH A 2160 2.09 REMARK 500 OE1 GLU A 1241 O HOH A 2034 2.10 REMARK 500 O HOH B 2068 O HOH B 2078 2.14 REMARK 500 OD2 ASP A 1428 OG1 THR A 1431 2.15 REMARK 500 O HOH A 2105 O HOH A 2107 2.16 REMARK 500 OE2 GLU A 1412 O HOH A 2120 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 2058 O HOH B 2100 3754 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A1179 60.60 -117.18 REMARK 500 SER A1235 37.26 -155.60 REMARK 500 SER A1355 -133.22 59.01 REMARK 500 ASN B1179 61.37 -119.94 REMARK 500 SER B1235 72.06 -157.33 REMARK 500 THR B1272 -162.55 -162.79 REMARK 500 ASP B1333 96.32 -68.50 REMARK 500 ARG B1352 -51.48 -125.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A2494 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 8XQ A3001 OAC REMARK 620 2 8XQ A3001 NAI 83.8 REMARK 620 3 HIS A1387 NE2 94.0 97.5 REMARK 620 4 GLU A1389 OE2 85.6 167.4 90.0 REMARK 620 5 HOH A2098 O 174.2 97.9 91.3 92.0 REMARK 620 6 HOH A2103 O 87.6 82.7 178.4 90.1 87.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A2495 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B2012 O REMARK 620 2 HOH B2013 O 73.9 REMARK 620 3 HOH B2011 O 101.6 167.9 REMARK 620 4 GLU A1287 OE2 155.3 81.4 102.8 REMARK 620 5 GLU B1188 OE1 83.9 79.5 88.9 92.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A2500 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2054 O REMARK 620 2 HOH A2060 O 87.7 REMARK 620 3 HOH A2015 O 87.5 172.5 REMARK 620 4 HOH B2150 O 179.4 91.7 93.1 REMARK 620 5 HOH A2013 O 87.7 90.6 83.4 92.3 REMARK 620 6 HOH A2059 O 94.3 91.7 94.4 85.7 176.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B2500 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B2155 O REMARK 620 2 HOH B2083 O 88.4 REMARK 620 3 GLU B1389 OE2 89.9 94.5 REMARK 620 4 HIS B1387 NE2 178.3 92.0 88.5 REMARK 620 5 8XQ B3001 NAI 83.0 97.4 165.9 98.5 REMARK 620 6 8XQ B3001 OAC 85.0 172.5 89.1 94.7 78.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 2494 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 2500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B 2500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 2495 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2496 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2497 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2498 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 2501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2499 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 8XQ A 3001 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 8XQ B 3001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2XUE RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF JMJD3 DBREF 2XXZ A 1173 1502 UNP O15054 KDM6B_HUMAN 1173 1502 DBREF 2XXZ B 1173 1502 UNP O15054 KDM6B_HUMAN 1173 1502 SEQADV 2XXZ SER A 1171 UNP O15054 EXPRESSION TAG SEQADV 2XXZ MET A 1172 UNP O15054 EXPRESSION TAG SEQADV 2XXZ SER B 1171 UNP O15054 EXPRESSION TAG SEQADV 2XXZ MET B 1172 UNP O15054 EXPRESSION TAG SEQRES 1 A 332 SER MET LEU PRO ARG GLU LYS LEU ASN PRO PRO THR PRO SEQRES 2 A 332 SER ILE TYR LEU GLU SER LYS ARG ASP ALA PHE SER PRO SEQRES 3 A 332 VAL LEU LEU GLN PHE CYS THR ASP PRO ARG ASN PRO ILE SEQRES 4 A 332 THR VAL ILE ARG GLY LEU ALA GLY SER LEU ARG LEU ASN SEQRES 5 A 332 LEU GLY LEU PHE SER THR LYS THR LEU VAL GLU ALA SER SEQRES 6 A 332 GLY GLU HIS THR VAL GLU VAL ARG THR GLN VAL GLN GLN SEQRES 7 A 332 PRO SER ASP GLU ASN TRP ASP LEU THR GLY THR ARG GLN SEQRES 8 A 332 ILE TRP PRO CYS GLU SER SER ARG SER HIS THR THR ILE SEQRES 9 A 332 ALA LYS TYR ALA GLN TYR GLN ALA SER SER PHE GLN GLU SEQRES 10 A 332 SER LEU GLN GLU GLU LYS GLU SER GLU ASP GLU GLU SER SEQRES 11 A 332 GLU GLU PRO ASP SER THR THR GLY THR PRO PRO SER SER SEQRES 12 A 332 ALA PRO ASP PRO LYS ASN HIS HIS ILE ILE LYS PHE GLY SEQRES 13 A 332 THR ASN ILE ASP LEU SER ASP ALA LYS ARG TRP LYS PRO SEQRES 14 A 332 GLN LEU GLN GLU LEU LEU LYS LEU PRO ALA PHE MET ARG SEQRES 15 A 332 VAL THR SER THR GLY ASN MET LEU SER HIS VAL GLY HIS SEQRES 16 A 332 THR ILE LEU GLY MET ASN THR VAL GLN LEU TYR MET LYS SEQRES 17 A 332 VAL PRO GLY SER ARG THR PRO GLY HIS GLN GLU ASN ASN SEQRES 18 A 332 ASN PHE CYS SER VAL ASN ILE ASN ILE GLY PRO GLY ASP SEQRES 19 A 332 CYS GLU TRP PHE ALA VAL HIS GLU HIS TYR TRP GLU THR SEQRES 20 A 332 ILE SER ALA PHE CYS ASP ARG HIS GLY VAL ASP TYR LEU SEQRES 21 A 332 THR GLY SER TRP TRP PRO ILE LEU ASP ASP LEU TYR ALA SEQRES 22 A 332 SER ASN ILE PRO VAL TYR ARG PHE VAL GLN ARG PRO GLY SEQRES 23 A 332 ASP LEU VAL TRP ILE ASN ALA GLY THR VAL HIS TRP VAL SEQRES 24 A 332 GLN ALA THR GLY TRP CYS ASN ASN ILE ALA TRP ASN VAL SEQRES 25 A 332 GLY PRO LEU THR ALA TYR GLN TYR GLN LEU ALA LEU GLU SEQRES 26 A 332 ARG TYR GLU TRP ASN GLU VAL SEQRES 1 B 332 SER MET LEU PRO ARG GLU LYS LEU ASN PRO PRO THR PRO SEQRES 2 B 332 SER ILE TYR LEU GLU SER LYS ARG ASP ALA PHE SER PRO SEQRES 3 B 332 VAL LEU LEU GLN PHE CYS THR ASP PRO ARG ASN PRO ILE SEQRES 4 B 332 THR VAL ILE ARG GLY LEU ALA GLY SER LEU ARG LEU ASN SEQRES 5 B 332 LEU GLY LEU PHE SER THR LYS THR LEU VAL GLU ALA SER SEQRES 6 B 332 GLY GLU HIS THR VAL GLU VAL ARG THR GLN VAL GLN GLN SEQRES 7 B 332 PRO SER ASP GLU ASN TRP ASP LEU THR GLY THR ARG GLN SEQRES 8 B 332 ILE TRP PRO CYS GLU SER SER ARG SER HIS THR THR ILE SEQRES 9 B 332 ALA LYS TYR ALA GLN TYR GLN ALA SER SER PHE GLN GLU SEQRES 10 B 332 SER LEU GLN GLU GLU LYS GLU SER GLU ASP GLU GLU SER SEQRES 11 B 332 GLU GLU PRO ASP SER THR THR GLY THR PRO PRO SER SER SEQRES 12 B 332 ALA PRO ASP PRO LYS ASN HIS HIS ILE ILE LYS PHE GLY SEQRES 13 B 332 THR ASN ILE ASP LEU SER ASP ALA LYS ARG TRP LYS PRO SEQRES 14 B 332 GLN LEU GLN GLU LEU LEU LYS LEU PRO ALA PHE MET ARG SEQRES 15 B 332 VAL THR SER THR GLY ASN MET LEU SER HIS VAL GLY HIS SEQRES 16 B 332 THR ILE LEU GLY MET ASN THR VAL GLN LEU TYR MET LYS SEQRES 17 B 332 VAL PRO GLY SER ARG THR PRO GLY HIS GLN GLU ASN ASN SEQRES 18 B 332 ASN PHE CYS SER VAL ASN ILE ASN ILE GLY PRO GLY ASP SEQRES 19 B 332 CYS GLU TRP PHE ALA VAL HIS GLU HIS TYR TRP GLU THR SEQRES 20 B 332 ILE SER ALA PHE CYS ASP ARG HIS GLY VAL ASP TYR LEU SEQRES 21 B 332 THR GLY SER TRP TRP PRO ILE LEU ASP ASP LEU TYR ALA SEQRES 22 B 332 SER ASN ILE PRO VAL TYR ARG PHE VAL GLN ARG PRO GLY SEQRES 23 B 332 ASP LEU VAL TRP ILE ASN ALA GLY THR VAL HIS TRP VAL SEQRES 24 B 332 GLN ALA THR GLY TRP CYS ASN ASN ILE ALA TRP ASN VAL SEQRES 25 B 332 GLY PRO LEU THR ALA TYR GLN TYR GLN LEU ALA LEU GLU SEQRES 26 B 332 ARG TYR GLU TRP ASN GLU VAL HET NI A2494 1 HET NA A2495 1 HET NI A2500 1 HET EDO A2496 4 HET EDO A2497 4 HET EDO A2498 4 HET EDO A2499 4 HET 8XQ A3001 14 HET NI B2500 1 HET EDO B2501 4 HET 8XQ B3001 14 HETNAM NI NICKEL (II) ION HETNAM NA SODIUM ION HETNAM EDO 1,2-ETHANEDIOL HETNAM 8XQ 8-HYDROXYQUINOLINE-5-CARBOXYLIC ACID HETSYN EDO ETHYLENE GLYCOL FORMUL 3 NI 3(NI 2+) FORMUL 4 NA NA 1+ FORMUL 6 EDO 5(C2 H6 O2) FORMUL 10 8XQ 2(C10 H7 N O3) FORMUL 14 HOH *319(H2 O) HELIX 1 1 SER A 1189 ALA A 1193 5 5 HELIX 2 2 SER A 1195 ASP A 1204 1 10 HELIX 3 3 GLY A 1214 ARG A 1220 1 7 HELIX 4 4 ASN A 1222 PHE A 1226 5 5 HELIX 5 5 SER A 1227 GLY A 1236 1 10 HELIX 6 6 ILE A 1274 GLU A 1287 1 14 HELIX 7 7 ASP A 1333 LEU A 1345 1 13 HELIX 8 8 PRO A 1348 ARG A 1352 5 5 HELIX 9 9 GLU A 1389 PHE A 1393 5 5 HELIX 10 10 HIS A 1411 HIS A 1413 5 3 HELIX 11 11 TYR A 1414 HIS A 1425 1 12 HELIX 12 12 ILE A 1437 SER A 1444 1 8 HELIX 13 13 ALA A 1487 ALA A 1493 5 7 HELIX 14 14 ARG B 1175 ASN B 1179 5 5 HELIX 15 15 SER B 1189 SER B 1195 1 7 HELIX 16 16 SER B 1195 ASP B 1204 1 10 HELIX 17 17 GLY B 1214 ARG B 1220 1 7 HELIX 18 18 ASN B 1222 PHE B 1226 5 5 HELIX 19 19 SER B 1227 GLY B 1236 1 10 HELIX 20 20 ILE B 1274 GLN B 1290 1 17 HELIX 21 21 TRP B 1337 LEU B 1345 1 9 HELIX 22 22 PRO B 1348 ARG B 1352 5 5 HELIX 23 23 GLU B 1389 PHE B 1393 5 5 HELIX 24 24 HIS B 1411 HIS B 1413 5 3 HELIX 25 25 TYR B 1414 HIS B 1425 1 12 HELIX 26 26 ILE B 1437 SER B 1444 1 8 HELIX 27 27 THR B 1486 TRP B 1499 1 14 SHEET 1 AA 9 SER A1184 TYR A1186 0 SHEET 2 AA 9 ILE A1209 ARG A1213 1 O VAL A1211 N ILE A1185 SHEET 3 AA 9 LEU A1458 ILE A1461 -1 O LEU A1458 N ILE A1212 SHEET 4 AA 9 CYS A1394 PRO A1402 -1 O SER A1395 N ILE A1461 SHEET 5 AA 9 CYS A1475 GLY A1483 -1 O ASN A1476 N ILE A1400 SHEET 6 AA 9 VAL A1373 LYS A1378 -1 O GLN A1374 N ALA A1479 SHEET 7 AA 9 ILE A1322 ASP A1330 -1 O GLY A1326 N MET A1377 SHEET 8 AA 9 THR A1239 VAL A1246 -1 O GLU A1241 N THR A1327 SHEET 9 AA 9 SER A1268 THR A1273 -1 O SER A1268 N THR A1244 SHEET 1 AB 2 SER A1361 HIS A1362 0 SHEET 2 AB 2 HIS A1365 THR A1366 -1 O HIS A1365 N HIS A1362 SHEET 1 AC 4 ARG A1383 HIS A1387 0 SHEET 2 AC 4 VAL A1466 ALA A1471 -1 O HIS A1467 N HIS A1387 SHEET 3 AC 4 CYS A1405 VAL A1410 -1 O GLU A1406 N GLN A1470 SHEET 4 AC 4 TYR A1449 GLN A1453 -1 O TYR A1449 N ALA A1409 SHEET 1 BA 9 SER B1184 TYR B1186 0 SHEET 2 BA 9 ILE B1209 ARG B1213 1 O VAL B1211 N ILE B1185 SHEET 3 BA 9 LEU B1458 ILE B1461 -1 O LEU B1458 N ILE B1212 SHEET 4 BA 9 CYS B1394 PRO B1402 -1 O SER B1395 N ILE B1461 SHEET 5 BA 9 CYS B1475 VAL B1482 -1 O ASN B1476 N ILE B1400 SHEET 6 BA 9 GLN B1374 LYS B1378 -1 O GLN B1374 N ALA B1479 SHEET 7 BA 9 ILE B1322 ASP B1330 -1 O GLY B1326 N MET B1377 SHEET 8 BA 9 THR B1239 VAL B1246 -1 O GLU B1241 N THR B1327 SHEET 9 BA 9 SER B1268 THR B1273 -1 O SER B1268 N THR B1244 SHEET 1 BB 4 ARG B1383 HIS B1387 0 SHEET 2 BB 4 VAL B1466 ALA B1471 -1 O HIS B1467 N HIS B1387 SHEET 3 BB 4 CYS B1405 VAL B1410 -1 O GLU B1406 N GLN B1470 SHEET 4 BB 4 TYR B1449 GLN B1453 -1 O TYR B1449 N ALA B1409 LINK NI NI A2494 OAC 8XQ A3001 1555 1555 2.07 LINK NI NI A2494 NAI 8XQ A3001 1555 1555 2.15 LINK NI NI A2494 NE2 HIS A1387 1555 1555 2.02 LINK NI NI A2494 OE2 GLU A1389 1555 1555 2.13 LINK NI NI A2494 O HOH A2098 1555 1555 2.08 LINK NI NI A2494 O HOH A2103 1555 1555 2.37 LINK NA NA A2495 O HOH B2012 1555 4565 2.30 LINK NA NA A2495 O HOH B2013 1555 4565 2.08 LINK NA NA A2495 O HOH B2011 1555 4565 2.41 LINK NA NA A2495 OE2 GLU A1287 1555 1555 2.05 LINK NA NA A2495 OE1 GLU B1188 1555 4565 2.03 LINK NI NI A2500 O HOH A2054 1555 1555 2.16 LINK NI NI A2500 O HOH A2060 1555 1555 2.16 LINK NI NI A2500 O HOH A2015 1555 4465 2.18 LINK NI NI A2500 O HOH B2150 1555 4465 2.11 LINK NI NI A2500 O HOH A2013 1555 4465 2.19 LINK NI NI A2500 O HOH A2059 1555 1555 2.02 LINK NI NI B2500 O HOH B2155 1555 1555 2.17 LINK NI NI B2500 O HOH B2083 1555 1555 2.17 LINK NI NI B2500 OE2 GLU B1389 1555 1555 2.03 LINK NI NI B2500 NE2 HIS B1387 1555 1555 2.07 LINK NI NI B2500 NAI 8XQ B3001 1555 1555 2.15 LINK NI NI B2500 OAC 8XQ B3001 1555 1555 2.12 CISPEP 1 GLY A 1401 PRO A 1402 0 2.40 CISPEP 2 GLY B 1401 PRO B 1402 0 4.84 SITE 1 AC1 5 HIS A1387 GLU A1389 HOH A2098 HOH A2103 SITE 2 AC1 5 8XQ A3001 SITE 1 AC2 6 HOH A2013 HOH A2015 HOH A2054 HOH A2059 SITE 2 AC2 6 HOH A2060 HOH B2150 SITE 1 AC3 5 HIS B1387 GLU B1389 HOH B2083 HOH B2155 SITE 2 AC3 5 8XQ B3001 SITE 1 AC4 5 GLU A1287 GLU B1188 HOH B2011 HOH B2012 SITE 2 AC4 5 HOH B2013 SITE 1 AC5 4 ILE A1185 TYR A1186 GLN B1200 HOH B2020 SITE 1 AC6 7 ASP A1204 GLN A1489 HOH A2163 HOH A2164 SITE 2 AC6 7 PRO B1183 SER B1184 PHE B1201 SITE 1 AC7 3 ASP A1330 MET A1370 HOH A2015 SITE 1 AC8 4 ARG A1191 LYS B1190 ARG B1191 TYR B1497 SITE 1 AC9 4 SER A1227 THR A1228 GLY A1401 ASN A1476 SITE 1 BC1 12 TYR A1376 LYS A1378 THR A1384 HIS A1387 SITE 2 BC1 12 GLU A1389 ASN A1397 TRP A1407 ILE A1461 SITE 3 BC1 12 HIS A1467 ASN A1477 HOH A2103 NI A2494 SITE 1 BC2 11 TYR B1376 LYS B1378 THR B1384 HIS B1387 SITE 2 BC2 11 GLU B1389 ASN B1397 TRP B1407 HIS B1467 SITE 3 BC2 11 HOH B2091 HOH B2155 NI B2500 CRYST1 56.757 71.431 159.698 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017619 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014000 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006262 0.00000