HEADER    HYDROLASE                               14-DEC-10   2Y2E              
TITLE     CRYSTAL STRUCTURE OF AMPD GROWN AT PH 5.5                             
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: 1,6-ANHYDRO-N-ACETYLMURAMYL-L-ALANINE AMIDASE AMPD;        
COMPND   3 CHAIN: A, B, C;                                                      
COMPND   4 SYNONYM: AMPD, N-ACETYLMURAMOYL-L-ALANINE AMIDASE;                   
COMPND   5 EC: 3.5.1.28;                                                        
COMPND   6 ENGINEERED: YES;                                                     
COMPND   7 OTHER_DETAILS: AMPD PH 5.5                                           
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: CITROBACTER FREUNDII;                           
SOURCE   3 ORGANISM_TAXID: 546;                                                 
SOURCE   4 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   5 EXPRESSION_SYSTEM_TAXID: 562                                         
KEYWDS    HYDROLASE, PEPTIDOGLYCAN AMIDASE, AMIDASE_2 FAMILY, ACTIVATION        
KEYWDS   2 MECHANISM                                                            
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    C.CARRASCO-LOPEZ,A.ROJAS-ALTUVE,W.ZHANG,D.HESEK,M.LEE,S.BARBE,        
AUTHOR   2 I.ANDRE,N.SILVA-MARTIN,M.MARTINEZ-RIPOLL,S.MOBASHERY,J.A.HERMOSO     
REVDAT   3   20-DEC-23 2Y2E    1       REMARK LINK                              
REVDAT   2   14-SEP-11 2Y2E    1       JRNL                                     
REVDAT   1   20-JUL-11 2Y2E    0                                                
JRNL        AUTH   C.CARRASCO-LOPEZ,A.ROJAS-ALTUVE,W.ZHANG,D.HESEK,M.LEE,       
JRNL        AUTH 2 S.BARBE,I.ANDRE,P.FERRER,N.SILVA-MARTIN,G.R.CASTRO,          
JRNL        AUTH 3 M.MARTINEZ-RIPOLL,S.MOBASHERY,J.A.HERMOSO                    
JRNL        TITL   CRYSTAL STRUCTURES OF BACTERIAL PEPTIDOGLYCAN AMIDASE AMPD   
JRNL        TITL 2 AND AN UNPRECEDENTED ACTIVATION MECHANISM.                   
JRNL        REF    J.BIOL.CHEM.                  V. 286 31714 2011              
JRNL        REFN                   ISSN 0021-9258                               
JRNL        PMID   21775432                                                     
JRNL        DOI    10.1074/JBC.M111.264366                                      
REMARK   2                                                                      
REMARK   2 RESOLUTION.    2.00 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : PHENIX (PHENIX.REFINE)                               
REMARK   3   AUTHORS     : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN            
REMARK   3               : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,           
REMARK   3               : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,            
REMARK   3               : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,              
REMARK   3               : REETAL PAI,RANDY READ,JANE RICHARDSON,               
REMARK   3               : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,           
REMARK   3               : NICHOLAS SAUTER,JACOB SMITH,LAURENT                  
REMARK   3               : STORONI,TOM TERWILLIGER,PETER ZWART                  
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : ML                                            
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 36.52                          
REMARK   3   MIN(FOBS/SIGMA_FOBS)              : 0.050                          
REMARK   3   COMPLETENESS FOR RANGE        (%) : 99.1                           
REMARK   3   NUMBER OF REFLECTIONS             : 32182                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.206                           
REMARK   3   R VALUE            (WORKING SET) : 0.201                           
REMARK   3   FREE R VALUE                     : 0.272                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 7.200                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 2300                            
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT (IN BINS).                           
REMARK   3   BIN  RESOLUTION RANGE  COMPL.    NWORK NFREE   RWORK  RFREE        
REMARK   3     1 36.5271 -  4.3068    1.00     2994   242  0.2116 0.2345        
REMARK   3     2  4.3068 -  3.4193    1.00     3015   235  0.1817 0.2361        
REMARK   3     3  3.4193 -  2.9873    1.00     3026   235  0.1913 0.2640        
REMARK   3     4  2.9873 -  2.7142    1.00     3028   215  0.2024 0.2667        
REMARK   3     5  2.7142 -  2.5198    1.00     2971   230  0.1917 0.2901        
REMARK   3     6  2.5198 -  2.3712    0.99     3060   215  0.2018 0.2981        
REMARK   3     7  2.3712 -  2.2525    0.99     2955   262  0.2081 0.2827        
REMARK   3     8  2.2525 -  2.1544    0.98     2979   232  0.2062 0.3200        
REMARK   3     9  2.1544 -  2.0715    0.98     2953   217  0.2048 0.2993        
REMARK   3    10  2.0715 -  2.0000    0.97     2901   217  0.2121 0.2821        
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED        : FLAT BULK SOLVENT MODEL                       
REMARK   3   SOLVENT RADIUS     : 1.11                                          
REMARK   3   SHRINKAGE RADIUS   : 0.90                                          
REMARK   3   K_SOL              : 0.39                                          
REMARK   3   B_SOL              : 66.90                                         
REMARK   3                                                                      
REMARK   3  ERROR ESTIMATES.                                                    
REMARK   3   COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED)     : 0.320            
REMARK   3   PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.600           
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : NULL                           
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : NULL                           
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : 2.33420                                              
REMARK   3    B22 (A**2) : 2.33420                                              
REMARK   3    B33 (A**2) : -4.66830                                             
REMARK   3    B12 (A**2) : 0.00000                                              
REMARK   3    B13 (A**2) : 0.00000                                              
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  TWINNING INFORMATION.                                               
REMARK   3   FRACTION: NULL                                                     
REMARK   3   OPERATOR: NULL                                                     
REMARK   3                                                                      
REMARK   3  DEVIATIONS FROM IDEAL VALUES.                                       
REMARK   3                 RMSD          COUNT                                  
REMARK   3   BOND      :  0.011           4370                                  
REMARK   3   ANGLE     :  1.115           5976                                  
REMARK   3   CHIRALITY :  0.075            631                                  
REMARK   3   PLANARITY :  0.006            797                                  
REMARK   3   DIHEDRAL  : 17.653           1546                                  
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : NULL                                       
REMARK   3                                                                      
REMARK   3  NCS DETAILS                                                         
REMARK   3   NUMBER OF NCS GROUPS : NULL                                        
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 2Y2E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-DEC-10.                  
REMARK 100 THE DEPOSITION ID IS D_1290046739.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 25-OCT-10                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 5.5                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : ESRF                               
REMARK 200  BEAMLINE                       : ID23-2                             
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 0.872600                           
REMARK 200  MONOCHROMATOR                  : NULL                               
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : MARMOSAIC 225 MM CCD               
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : XDS                                
REMARK 200  DATA SCALING SOFTWARE          : SCALA                              
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 32782                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 2.000                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 46.500                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : 0.000                              
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 100.0                              
REMARK 200  DATA REDUNDANCY                : 4.100                              
REMARK 200  R MERGE                    (I) : 0.09000                            
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 12.9000                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 2.10                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 100.0                              
REMARK 200  DATA REDUNDANCY IN SHELL       : 4.10                               
REMARK 200  R MERGE FOR SHELL          (I) : 0.26000                            
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : 4.900                              
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: MOLREP                                                
REMARK 200 STARTING MODEL: PDB ENTRY 2Y28                                       
REMARK 200                                                                      
REMARK 200 REMARK: NONE                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 37.00                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 5.5, 0.1 M LI2SO4, 28%     
REMARK 280  PEG 3350                                                            
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32                             
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -Y,X-Y,Z+2/3                                            
REMARK 290       3555   -X+Y,-X,Z+1/3                                           
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -0.500000 -0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.866025 -0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000       62.08333            
REMARK 290   SMTRY1   3 -0.500000  0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   3 -0.866025 -0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   3  0.000000  0.000000  1.000000       31.04167            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1, 2, 3                                                 
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC                  
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 2                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC                  
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 3                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC                  
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 APPLY THE FOLLOWING TO CHAINS: C                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     SER A   181                                                      
REMARK 465     SER A   182                                                      
REMARK 465     HIS A   183                                                      
REMARK 465     LYS A   184                                                      
REMARK 465     GLU A   185                                                      
REMARK 465     MET A   186                                                      
REMARK 465     THR A   187                                                      
REMARK 465     PRO B   180                                                      
REMARK 465     SER B   181                                                      
REMARK 465     SER B   182                                                      
REMARK 465     HIS B   183                                                      
REMARK 465     LYS B   184                                                      
REMARK 465     GLU B   185                                                      
REMARK 465     MET B   186                                                      
REMARK 465     THR B   187                                                      
REMARK 465     PRO C   180                                                      
REMARK 465     SER C   181                                                      
REMARK 465     SER C   182                                                      
REMARK 465     HIS C   183                                                      
REMARK 465     LYS C   184                                                      
REMARK 465     GLU C   185                                                      
REMARK 465     MET C   186                                                      
REMARK 465     THR C   187                                                      
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT                     
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500   O    HOH A  2253     O    HOH A  2259              2.00            
REMARK 500   O    TYR B   125     O    HOH B  2219              2.12            
REMARK 500   O    THR A   163     O    HOH A  2262              2.13            
REMARK 500   O    HOH B  2040     O    HOH B  2095              2.16            
REMARK 500   O    HOH B  2146     O    HOH B  2252              2.16            
REMARK 500   N    ALA A     9     O    HOH A  2028              2.17            
REMARK 500   OE2  GLU B    26     O    HOH B  2086              2.19            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS                                             
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC             
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT.  AN ATOM LOCATED WITHIN 0.15          
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A           
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375             
REMARK 500 INSTEAD OF REMARK 500.  ATOMS WITH NON-BLANK ALTERNATE               
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.            
REMARK 500                                                                      
REMARK 500 DISTANCE CUTOFF:                                                     
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS              
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS                  
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI  SSYMOP   DISTANCE          
REMARK 500   O    HOH B  2092     O    HOH C  2182     1565     2.19            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    TRP A  95       77.61   -118.32                                   
REMARK 500    GLU A 160       12.15     58.45                                   
REMARK 500    ASP B  20     -160.95   -125.73                                   
REMARK 500    PRO B  23      150.79    -48.73                                   
REMARK 500    TRP B  95       69.72   -113.69                                   
REMARK 500    TYR B 144       76.57   -119.70                                   
REMARK 500    ARG B 161      -42.13   -135.89                                   
REMARK 500    ASP C   4     -147.96    -75.48                                   
REMARK 500    GLU C   5       53.04    -69.73                                   
REMARK 500    PRO C  15       91.33    -56.24                                   
REMARK 500    HIS C  61      133.46    177.94                                   
REMARK 500    TRP C  95       75.14   -102.43                                   
REMARK 500    ARG C 107       72.80     53.80                                   
REMARK 500    GLU C 160      -62.43     74.46                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 525                                                                      
REMARK 525 SOLVENT                                                              
REMARK 525                                                                      
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT                    
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST                  
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT                 
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE                       
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;                             
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE                  
REMARK 525 NUMBER; I=INSERTION CODE):                                           
REMARK 525                                                                      
REMARK 525  M RES CSSEQI                                                        
REMARK 525    HOH A2017        DISTANCE =  6.77 ANGSTROMS                       
REMARK 525    HOH A2019        DISTANCE =  7.98 ANGSTROMS                       
REMARK 525    HOH A2021        DISTANCE =  7.98 ANGSTROMS                       
REMARK 525    HOH A2025        DISTANCE =  6.91 ANGSTROMS                       
REMARK 525    HOH A2036        DISTANCE =  5.88 ANGSTROMS                       
REMARK 525    HOH A2059        DISTANCE =  6.21 ANGSTROMS                       
REMARK 525    HOH A2061        DISTANCE =  6.27 ANGSTROMS                       
REMARK 525    HOH B2005        DISTANCE =  6.44 ANGSTROMS                       
REMARK 525    HOH B2010        DISTANCE =  6.02 ANGSTROMS                       
REMARK 525    HOH B2014        DISTANCE =  8.31 ANGSTROMS                       
REMARK 525    HOH B2020        DISTANCE =  7.00 ANGSTROMS                       
REMARK 525    HOH B2021        DISTANCE =  6.32 ANGSTROMS                       
REMARK 525    HOH B2025        DISTANCE =  6.76 ANGSTROMS                       
REMARK 525    HOH B2026        DISTANCE =  6.22 ANGSTROMS                       
REMARK 525    HOH B2035        DISTANCE =  6.68 ANGSTROMS                       
REMARK 525    HOH B2037        DISTANCE =  5.92 ANGSTROMS                       
REMARK 525    HOH B2045        DISTANCE =  6.18 ANGSTROMS                       
REMARK 525    HOH B2051        DISTANCE =  6.34 ANGSTROMS                       
REMARK 525    HOH B2055        DISTANCE =  6.89 ANGSTROMS                       
REMARK 525    HOH B2058        DISTANCE =  6.15 ANGSTROMS                       
REMARK 525    HOH B2069        DISTANCE =  7.35 ANGSTROMS                       
REMARK 525    HOH B2070        DISTANCE =  6.38 ANGSTROMS                       
REMARK 525    HOH B2110        DISTANCE =  5.93 ANGSTROMS                       
REMARK 525    HOH C2005        DISTANCE =  6.99 ANGSTROMS                       
REMARK 525    HOH C2010        DISTANCE =  6.11 ANGSTROMS                       
REMARK 525    HOH C2014        DISTANCE =  6.96 ANGSTROMS                       
REMARK 525    HOH C2018        DISTANCE =  8.92 ANGSTROMS                       
REMARK 525    HOH C2028        DISTANCE =  5.90 ANGSTROMS                       
REMARK 525    HOH C2030        DISTANCE =  6.19 ANGSTROMS                       
REMARK 525    HOH C2041        DISTANCE =  6.05 ANGSTROMS                       
REMARK 525    HOH C2043        DISTANCE =  6.78 ANGSTROMS                       
REMARK 525    HOH C2044        DISTANCE =  7.76 ANGSTROMS                       
REMARK 525    HOH C2045        DISTANCE =  6.30 ANGSTROMS                       
REMARK 525    HOH C2051        DISTANCE =  7.52 ANGSTROMS                       
REMARK 525    HOH C2057        DISTANCE =  5.88 ANGSTROMS                       
REMARK 525    HOH C2062        DISTANCE =  7.00 ANGSTROMS                       
REMARK 525    HOH C2086        DISTANCE =  5.99 ANGSTROMS                       
REMARK 525    HOH C2111        DISTANCE =  5.95 ANGSTROMS                       
REMARK 525    HOH C2121        DISTANCE =  6.18 ANGSTROMS                       
REMARK 525    HOH C2122        DISTANCE =  5.91 ANGSTROMS                       
REMARK 525    HOH C2129        DISTANCE =  6.57 ANGSTROMS                       
REMARK 525    HOH C2130        DISTANCE =  5.88 ANGSTROMS                       
REMARK 620                                                                      
REMARK 620 METAL COORDINATION                                                   
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              ZN A1180  ZN                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 HIS A  34   ND1                                                    
REMARK 620 2 HIS A 154   ND1  92.6                                              
REMARK 620 3 ASP A 164   OD1 139.1  83.0                                        
REMARK 620 4 ASP A 164   OD2 100.9 135.0  58.9                                  
REMARK 620 N                    1     2     3                                   
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              ZN B1180  ZN                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 HIS B  34   ND1                                                    
REMARK 620 2 HIS B 154   ND1  86.7                                              
REMARK 620 3 ASP B 164   OD1 141.2  94.1                                        
REMARK 620 4 ASP B 164   OD2  93.4 134.7  59.4                                  
REMARK 620 N                    1     2     3                                   
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              ZN C1180  ZN                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 HIS C  34   ND1                                                    
REMARK 620 2 HIS C 154   ND1  93.4                                              
REMARK 620 3 ASP C 164   OD1 152.3  90.6                                        
REMARK 620 4 ASP C 164   OD2  96.2 129.2  60.9                                  
REMARK 620 5 HOH C2276   O   108.7 101.1  97.4 122.2                            
REMARK 620 N                    1     2     3     4                             
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1180                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1180                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC3                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 1180                 
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 1J3G   RELATED DB: PDB                                   
REMARK 900 SOLUTION STRUCTURE OF CITROBACTER FREUNDII AMPD                      
REMARK 900 RELATED ID: 2Y2C   RELATED DB: PDB                                   
REMARK 900 CRYSTAL STRUCTURE OF AMPD APOENZYME                                  
REMARK 900 RELATED ID: 2Y2D   RELATED DB: PDB                                   
REMARK 900 CRYSTAL STRUCTURE OF AMPD HOLOENZYME                                 
REMARK 900 RELATED ID: 2Y28   RELATED DB: PDB                                   
REMARK 900 CRYSTAL STRUCTURE OF SE-MET AMPD DERIVATIVE                          
REMARK 900 RELATED ID: 2Y2B   RELATED DB: PDB                                   
REMARK 900 CRYSTAL STRUCTURE OF AMPD IN COMPLEX WITH REACTION PRODUCTS          
DBREF  2Y2E A    1   187  UNP    P82974   AMPD_CITFR       1    187             
DBREF  2Y2E B    1   187  UNP    P82974   AMPD_CITFR       1    187             
DBREF  2Y2E C    1   187  UNP    P82974   AMPD_CITFR       1    187             
SEQRES   1 A  187  MET LEU LEU ASP GLU GLY TRP LEU ALA GLU ALA ARG ARG          
SEQRES   2 A  187  VAL PRO SER PRO HIS TYR ASP CYS ARG PRO ASP ASP GLU          
SEQRES   3 A  187  ASN PRO SER LEU LEU VAL VAL HIS ASN ILE SER LEU PRO          
SEQRES   4 A  187  PRO GLY GLU PHE GLY GLY PRO TRP ILE ASP ALA LEU PHE          
SEQRES   5 A  187  THR GLY THR ILE ASP PRO ASN ALA HIS PRO TYR PHE ALA          
SEQRES   6 A  187  GLY ILE ALA HIS LEU ARG VAL SER ALA HIS CYS LEU ILE          
SEQRES   7 A  187  ARG ARG ASP GLY GLU ILE VAL GLN TYR VAL PRO PHE ASP          
SEQRES   8 A  187  LYS ARG ALA TRP HIS ALA GLY VAL SER SER TYR GLN GLY          
SEQRES   9 A  187  ARG GLU ARG CYS ASN ASP PHE SER ILE GLY ILE GLU LEU          
SEQRES  10 A  187  GLU GLY THR ASP THR LEU ALA TYR THR ASP ALA GLN TYR          
SEQRES  11 A  187  GLN GLN LEU ALA ALA VAL THR ASN ALA LEU ILE THR ARG          
SEQRES  12 A  187  TYR PRO ALA ILE ALA ASN ASN MET THR GLY HIS CYS ASN          
SEQRES  13 A  187  ILE ALA PRO GLU ARG LYS THR ASP PRO GLY PRO SER PHE          
SEQRES  14 A  187  ASP TRP ALA ARG PHE ARG ALA LEU VAL THR PRO SER SER          
SEQRES  15 A  187  HIS LYS GLU MET THR                                          
SEQRES   1 B  187  MET LEU LEU ASP GLU GLY TRP LEU ALA GLU ALA ARG ARG          
SEQRES   2 B  187  VAL PRO SER PRO HIS TYR ASP CYS ARG PRO ASP ASP GLU          
SEQRES   3 B  187  ASN PRO SER LEU LEU VAL VAL HIS ASN ILE SER LEU PRO          
SEQRES   4 B  187  PRO GLY GLU PHE GLY GLY PRO TRP ILE ASP ALA LEU PHE          
SEQRES   5 B  187  THR GLY THR ILE ASP PRO ASN ALA HIS PRO TYR PHE ALA          
SEQRES   6 B  187  GLY ILE ALA HIS LEU ARG VAL SER ALA HIS CYS LEU ILE          
SEQRES   7 B  187  ARG ARG ASP GLY GLU ILE VAL GLN TYR VAL PRO PHE ASP          
SEQRES   8 B  187  LYS ARG ALA TRP HIS ALA GLY VAL SER SER TYR GLN GLY          
SEQRES   9 B  187  ARG GLU ARG CYS ASN ASP PHE SER ILE GLY ILE GLU LEU          
SEQRES  10 B  187  GLU GLY THR ASP THR LEU ALA TYR THR ASP ALA GLN TYR          
SEQRES  11 B  187  GLN GLN LEU ALA ALA VAL THR ASN ALA LEU ILE THR ARG          
SEQRES  12 B  187  TYR PRO ALA ILE ALA ASN ASN MET THR GLY HIS CYS ASN          
SEQRES  13 B  187  ILE ALA PRO GLU ARG LYS THR ASP PRO GLY PRO SER PHE          
SEQRES  14 B  187  ASP TRP ALA ARG PHE ARG ALA LEU VAL THR PRO SER SER          
SEQRES  15 B  187  HIS LYS GLU MET THR                                          
SEQRES   1 C  187  MET LEU LEU ASP GLU GLY TRP LEU ALA GLU ALA ARG ARG          
SEQRES   2 C  187  VAL PRO SER PRO HIS TYR ASP CYS ARG PRO ASP ASP GLU          
SEQRES   3 C  187  ASN PRO SER LEU LEU VAL VAL HIS ASN ILE SER LEU PRO          
SEQRES   4 C  187  PRO GLY GLU PHE GLY GLY PRO TRP ILE ASP ALA LEU PHE          
SEQRES   5 C  187  THR GLY THR ILE ASP PRO ASN ALA HIS PRO TYR PHE ALA          
SEQRES   6 C  187  GLY ILE ALA HIS LEU ARG VAL SER ALA HIS CYS LEU ILE          
SEQRES   7 C  187  ARG ARG ASP GLY GLU ILE VAL GLN TYR VAL PRO PHE ASP          
SEQRES   8 C  187  LYS ARG ALA TRP HIS ALA GLY VAL SER SER TYR GLN GLY          
SEQRES   9 C  187  ARG GLU ARG CYS ASN ASP PHE SER ILE GLY ILE GLU LEU          
SEQRES  10 C  187  GLU GLY THR ASP THR LEU ALA TYR THR ASP ALA GLN TYR          
SEQRES  11 C  187  GLN GLN LEU ALA ALA VAL THR ASN ALA LEU ILE THR ARG          
SEQRES  12 C  187  TYR PRO ALA ILE ALA ASN ASN MET THR GLY HIS CYS ASN          
SEQRES  13 C  187  ILE ALA PRO GLU ARG LYS THR ASP PRO GLY PRO SER PHE          
SEQRES  14 C  187  ASP TRP ALA ARG PHE ARG ALA LEU VAL THR PRO SER SER          
SEQRES  15 C  187  HIS LYS GLU MET THR                                          
HET     ZN  A1180       1                                                       
HET     ZN  B1180       1                                                       
HET     ZN  C1180       1                                                       
HETNAM      ZN ZINC ION                                                         
FORMUL   4   ZN    3(ZN 2+)                                                     
FORMUL   7  HOH   *827(H2 O)                                                    
HELIX    1   1 ARG A   22  GLU A   26  5                                   5    
HELIX    2   2 PRO A   46  THR A   53  1                                   8    
HELIX    3   3 TYR A   63  HIS A   69  1                                   7    
HELIX    4   4 CYS A  108  ASP A  110  5                                   3    
HELIX    5   5 THR A  126  TYR A  144  1                                  19    
HELIX    6   6 PRO A  145  ASN A  149  5                                   5    
HELIX    7   7 HIS A  154  ALA A  158  1                                   5    
HELIX    8   8 ASP A  170  VAL A  178  1                                   9    
HELIX    9   9 PRO B   23  GLU B   26  5                                   4    
HELIX   10  10 PRO B   46  THR B   53  1                                   8    
HELIX   11  11 ASP B   57  ALA B   60  5                                   4    
HELIX   12  12 HIS B   61  ALA B   68  1                                   8    
HELIX   13  13 CYS B  108  ASP B  110  5                                   3    
HELIX   14  14 THR B  126  TYR B  144  1                                  19    
HELIX   15  15 PRO B  145  ASN B  149  5                                   5    
HELIX   16  16 HIS B  154  ALA B  158  1                                   5    
HELIX   17  17 ASP B  170  VAL B  178  1                                   9    
HELIX   18  18 ARG C   22  GLU C   26  5                                   5    
HELIX   19  19 PRO C   46  GLY C   54  1                                   9    
HELIX   20  20 HIS C   61  GLY C   66  1                                   6    
HELIX   21  21 THR C  126  TYR C  144  1                                  19    
HELIX   22  22 PRO C  145  ASN C  149  5                                   5    
HELIX   23  23 HIS C  154  ALA C  158  1                                   5    
HELIX   24  24 ASP C  170  ALA C  176  1                                   7    
SHEET    1  AA 2 LEU A   3  ASP A   4  0                                        
SHEET    2  AA 2 TRP A   7  LEU A   8 -1  O  TRP A   7   N  ASP A   4           
SHEET    1  AB 6 ARG A  12  ARG A  13  0                                        
SHEET    2  AB 6 ILE A  84  GLN A  86  1  O  ILE A  84   N  ARG A  12           
SHEET    3  AB 6 CYS A  76  ILE A  78 -1  O  LEU A  77   N  VAL A  85           
SHEET    4  AB 6 SER A 112  GLU A 118  1  O  GLU A 116   N  ILE A  78           
SHEET    5  AB 6 LEU A  30  ILE A  36  1  O  LEU A  30   N  ILE A 113           
SHEET    6  AB 6 MET A 151  GLY A 153  1  O  THR A 152   N  VAL A  33           
SHEET    1  AC 2 SER A 101  TYR A 102  0                                        
SHEET    2  AC 2 ARG A 105  GLU A 106 -1  O  ARG A 105   N  TYR A 102           
SHEET    1  BA 2 LEU B   3  ASP B   4  0                                        
SHEET    2  BA 2 TRP B   7  LEU B   8 -1  O  TRP B   7   N  ASP B   4           
SHEET    1  BB 6 ARG B  12  ARG B  13  0                                        
SHEET    2  BB 6 ILE B  84  GLN B  86  1  O  ILE B  84   N  ARG B  12           
SHEET    3  BB 6 CYS B  76  ILE B  78 -1  O  LEU B  77   N  VAL B  85           
SHEET    4  BB 6 SER B 112  GLU B 118  1  O  GLY B 114   N  CYS B  76           
SHEET    5  BB 6 LEU B  30  ILE B  36  1  O  LEU B  30   N  ILE B 113           
SHEET    6  BB 6 MET B 151  GLY B 153  1  O  THR B 152   N  VAL B  33           
SHEET    1  BC 2 ASP B  20  CYS B  21  0                                        
SHEET    2  BC 2 LYS B  92  ARG B  93 -1  O  ARG B  93   N  ASP B  20           
SHEET    1  BD 2 SER B 101  TYR B 102  0                                        
SHEET    2  BD 2 ARG B 105  GLU B 106 -1  O  ARG B 105   N  TYR B 102           
SHEET    1  CA 6 ARG C  12  ARG C  13  0                                        
SHEET    2  CA 6 ILE C  84  GLN C  86  1  O  ILE C  84   N  ARG C  12           
SHEET    3  CA 6 CYS C  76  ILE C  78 -1  O  LEU C  77   N  VAL C  85           
SHEET    4  CA 6 SER C 112  GLU C 118  1  O  GLY C 114   N  CYS C  76           
SHEET    5  CA 6 LEU C  30  ILE C  36  1  O  LEU C  30   N  ILE C 113           
SHEET    6  CA 6 MET C 151  GLY C 153  1  O  THR C 152   N  VAL C  33           
SHEET    1  CB 2 TYR C  19  ASP C  20  0                                        
SHEET    2  CB 2 ARG C  93  ALA C  94 -1  O  ARG C  93   N  ASP C  20           
SHEET    1  CC 2 SER C 101  TYR C 102  0                                        
SHEET    2  CC 2 ARG C 105  GLU C 106 -1  O  ARG C 105   N  TYR C 102           
LINK         ND1 HIS A  34                ZN    ZN A1180     1555   1555  2.08  
LINK         ND1 HIS A 154                ZN    ZN A1180     1555   1555  2.08  
LINK         OD1 ASP A 164                ZN    ZN A1180     1555   1555  2.32  
LINK         OD2 ASP A 164                ZN    ZN A1180     1555   1555  2.00  
LINK         ND1 HIS B  34                ZN    ZN B1180     1555   1555  2.13  
LINK         ND1 HIS B 154                ZN    ZN B1180     1555   1555  1.97  
LINK         OD1 ASP B 164                ZN    ZN B1180     1555   1555  2.30  
LINK         OD2 ASP B 164                ZN    ZN B1180     1555   1555  1.99  
LINK         ND1 HIS C  34                ZN    ZN C1180     1555   1555  2.12  
LINK         ND1 HIS C 154                ZN    ZN C1180     1555   1555  2.08  
LINK         OD1 ASP C 164                ZN    ZN C1180     1555   1555  2.20  
LINK         OD2 ASP C 164                ZN    ZN C1180     1555   1555  2.02  
LINK        ZN    ZN C1180                 O   HOH C2276     1555   1555  2.63  
CISPEP   1 LEU A   38    PRO A   39          0       -11.09                     
CISPEP   2 ASP A  164    PRO A  165          0         6.60                     
CISPEP   3 LEU B   38    PRO B   39          0        -7.73                     
CISPEP   4 ASP B  164    PRO B  165          0         7.61                     
CISPEP   5 LEU C   38    PRO C   39          0        -3.05                     
CISPEP   6 ASP C  164    PRO C  165          0         0.50                     
SITE     1 AC1  3 HIS A  34  HIS A 154  ASP A 164                               
SITE     1 AC2  3 HIS B  34  HIS B 154  ASP B 164                               
SITE     1 AC3  4 HIS C  34  HIS C 154  ASP C 164  HOH C2276                    
CRYST1   67.982   67.982   93.125  90.00  90.00 120.00 P 32          9          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.014710  0.008493  0.000000        0.00000                         
SCALE2      0.000000  0.016985  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.010738        0.00000