HEADER TRANSCRIPTION 17-DEC-10 2Y2Z TITLE LIGAND-FREE FORM OF TETR-LIKE REPRESSOR SIMR COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE REPRESSOR SIMREG2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 3-261; COMPND 5 SYNONYM: SIM16, SIMR; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES ANTIBIOTICUS; SOURCE 3 ORGANISM_TAXID: 1890; SOURCE 4 STRAIN: TU 6040; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET20B; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PIJ10499 KEYWDS TRANSCRIPTION, SIMOCYCLINONE REGULATOR, TETR-FAMILY EXPDTA X-RAY DIFFRACTION AUTHOR T.B.K.LE,C.E.M.STEVENSON,H.-P.FIEDLER,A.MAXWELL,D.M.LAWSON, AUTHOR 2 M.J.BUTTNER REVDAT 4 08-MAY-24 2Y2Z 1 REMARK REVDAT 3 08-MAY-19 2Y2Z 1 REMARK REVDAT 2 25-MAY-11 2Y2Z 1 JRNL REVDAT 1 09-MAR-11 2Y2Z 0 JRNL AUTH T.B.K.LE,C.E.M.STEVENSON,H.-P.FIEDLER,A.MAXWELL,D.M.LAWSON, JRNL AUTH 2 M.J.BUTTNER JRNL TITL STRUCTURES OF THE TETR-LIKE SIMOCYCLINONE EFFLUX PUMP JRNL TITL 2 REPRESSOR, SIMR, AND THE MECHANISM OF LIGAND-MEDIATED JRNL TITL 3 DEREPRESSION. JRNL REF J.MOL.BIOL. V. 408 40 2011 JRNL REFN ISSN 0022-2836 JRNL PMID 21354180 JRNL DOI 10.1016/J.JMB.2011.02.035 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0091 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 19717 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1044 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1447 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2800 REMARK 3 BIN FREE R VALUE SET COUNT : 72 REMARK 3 BIN FREE R VALUE : 0.3530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1881 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 121 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.67000 REMARK 3 B22 (A**2) : -0.67000 REMARK 3 B33 (A**2) : 1.01000 REMARK 3 B12 (A**2) : -0.34000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.171 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.149 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.117 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.090 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1976 ; 0.018 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1367 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2694 ; 1.572 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3294 ; 0.959 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 249 ; 5.696 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 94 ;36.559 ;22.447 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 326 ;16.160 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;13.898 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 291 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2236 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 427 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1214 ; 0.937 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 492 ; 0.251 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1952 ; 1.628 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 762 ; 2.536 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 739 ; 3.896 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 45 REMARK 3 ORIGIN FOR THE GROUP (A): -11.0580 -7.1022 -28.8398 REMARK 3 T TENSOR REMARK 3 T11: 0.1098 T22: 0.1064 REMARK 3 T33: 0.1061 T12: 0.0367 REMARK 3 T13: -0.0206 T23: 0.0285 REMARK 3 L TENSOR REMARK 3 L11: 9.7050 L22: 4.5101 REMARK 3 L33: 2.5609 L12: 1.3068 REMARK 3 L13: 0.5687 L23: -0.2218 REMARK 3 S TENSOR REMARK 3 S11: 0.0078 S12: 0.1184 S13: -0.4356 REMARK 3 S21: -0.2685 S22: 0.0145 S23: -0.2758 REMARK 3 S31: 0.0479 S32: 0.1806 S33: -0.0223 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 46 A 119 REMARK 3 ORIGIN FOR THE GROUP (A): -23.5739 -1.3354 -27.8549 REMARK 3 T TENSOR REMARK 3 T11: 0.0437 T22: 0.1540 REMARK 3 T33: 0.0903 T12: -0.0047 REMARK 3 T13: -0.0070 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 6.9909 L22: 3.0685 REMARK 3 L33: 1.3068 L12: -3.8858 REMARK 3 L13: 0.6841 L23: -1.2187 REMARK 3 S TENSOR REMARK 3 S11: 0.0711 S12: -0.2627 S13: -0.0775 REMARK 3 S21: -0.0715 S22: -0.0113 S23: -0.0626 REMARK 3 S31: 0.0511 S32: -0.0005 S33: -0.0598 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 120 A 134 REMARK 3 ORIGIN FOR THE GROUP (A): -23.6280 4.5153 -20.3326 REMARK 3 T TENSOR REMARK 3 T11: 0.1151 T22: 0.1388 REMARK 3 T33: 0.0930 T12: -0.0308 REMARK 3 T13: 0.0305 T23: -0.0801 REMARK 3 L TENSOR REMARK 3 L11: 4.9319 L22: 8.5426 REMARK 3 L33: 10.3099 L12: -1.2761 REMARK 3 L13: 0.5725 L23: -1.5929 REMARK 3 S TENSOR REMARK 3 S11: 0.0476 S12: -0.0634 S13: -0.0105 REMARK 3 S21: 0.4010 S22: 0.0887 S23: 0.4108 REMARK 3 S31: 0.4173 S32: -0.5737 S33: -0.1363 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 135 A 179 REMARK 3 ORIGIN FOR THE GROUP (A): -35.7060 7.2957 -21.9564 REMARK 3 T TENSOR REMARK 3 T11: 0.1016 T22: 0.2210 REMARK 3 T33: 0.1003 T12: -0.0053 REMARK 3 T13: 0.0453 T23: -0.0484 REMARK 3 L TENSOR REMARK 3 L11: 4.1271 L22: 5.2123 REMARK 3 L33: 2.0845 L12: 3.0851 REMARK 3 L13: 0.7102 L23: 1.0258 REMARK 3 S TENSOR REMARK 3 S11: 0.2778 S12: -0.4355 S13: 0.3286 REMARK 3 S21: 0.2482 S22: -0.0179 S23: -0.0513 REMARK 3 S31: 0.0215 S32: -0.0720 S33: -0.2599 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 180 A 244 REMARK 3 ORIGIN FOR THE GROUP (A): -52.3853 -3.4392 -25.8323 REMARK 3 T TENSOR REMARK 3 T11: 0.1438 T22: 0.2170 REMARK 3 T33: 0.1538 T12: -0.0206 REMARK 3 T13: -0.0611 T23: 0.0438 REMARK 3 L TENSOR REMARK 3 L11: 3.8281 L22: 1.8234 REMARK 3 L33: 1.6303 L12: 1.1354 REMARK 3 L13: -1.0738 L23: -1.6900 REMARK 3 S TENSOR REMARK 3 S11: 0.1302 S12: 0.0710 S13: 0.0883 REMARK 3 S21: -0.2754 S22: 0.1754 S23: 0.3745 REMARK 3 S31: 0.2046 S32: -0.1209 S33: -0.3056 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2Y2Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-DEC-10. REMARK 100 THE DEPOSITION ID IS D_1290046754. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9700 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20761 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 48.040 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.90 REMARK 200 R MERGE FOR SHELL (I) : 0.57000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: A PARTIAL MOLECULAR REPLACEMENT SOLUTION USING PDB ENTRY REMARK 200 2HX AS THE SEARCH MODEL WAS USED AS A SECONDARY SOURCE OF PHASE REMARK 200 INFORMATION. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HANGING DROP VAPOUR DIFFUSION. PROTEIN REMARK 280 AT 5MG/ML IN 25MM TRIS-HCL PH8.4, 300MM NACL MIXED WITH 2% PEG REMARK 280 10000, 0.2M AMMONIUM ACETATE IN 0.1M BIS-TRIS PH5.5 IN 1 TO 1 REMARK 280 RATIO., VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 58.03000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 33.50364 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 36.46033 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 58.03000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 33.50364 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 36.46033 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 58.03000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 33.50364 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 36.46033 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 58.03000 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 33.50364 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 36.46033 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 58.03000 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 33.50364 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 36.46033 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 58.03000 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 33.50364 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 36.46033 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 67.00727 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 72.92067 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 67.00727 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 72.92067 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 67.00727 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 72.92067 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 67.00727 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 72.92067 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 67.00727 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 72.92067 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 67.00727 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 72.92067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -58.03000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 -33.50364 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -36.46033 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2007 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2008 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2061 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 GLU A 3 REMARK 465 ASN A 4 REMARK 465 GLU A 5 REMARK 465 PRO A 6 REMARK 465 SER A 245 REMARK 465 PRO A 246 REMARK 465 PRO A 247 REMARK 465 GLY A 248 REMARK 465 ARG A 249 REMARK 465 SER A 250 REMARK 465 ALA A 251 REMARK 465 ALA A 252 REMARK 465 SER A 253 REMARK 465 GLU A 254 REMARK 465 ARG A 255 REMARK 465 PRO A 256 REMARK 465 ALA A 257 REMARK 465 LEU A 258 REMARK 465 ALA A 259 REMARK 465 LEU A 260 REMARK 465 GLU A 261 REMARK 465 HIS A 262 REMARK 465 HIS A 263 REMARK 465 HIS A 264 REMARK 465 HIS A 265 REMARK 465 HIS A 266 REMARK 465 HIS A 267 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 19 CD NE CZ NH1 NH2 REMARK 470 ARG A 25 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 91 NE CZ NH1 NH2 REMARK 470 ARG A 243 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 214 O HOH A 2113 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 89 C - N - CA ANGL. DEV. = 11.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 23 -33.99 76.51 REMARK 500 HIS A 24 18.81 81.20 REMARK 500 ARG A 87 79.98 -113.58 REMARK 500 LEU A 88 146.66 8.72 REMARK 500 ALA A 118 1.47 -67.38 REMARK 500 ARG A 122 72.95 15.11 REMARK 500 ARG A 122 62.12 15.11 REMARK 500 ASN A 123 -79.70 -60.44 REMARK 500 LYS A 182 12.22 58.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2Y31 RELATED DB: PDB REMARK 900 SIMOCYCLINONE C4 BOUND FORM OF TETR-LIKE REPRESSOR SIMR REMARK 900 RELATED ID: 2Y30 RELATED DB: PDB REMARK 900 SIMOCYCLINONE D8 BOUND FORM OF TETR-LIKE REPRESSOR SIMR DBREF 2Y2Z A 1 259 UNP Q9AMH9 Q9AMH9_STRAT 3 261 SEQADV 2Y2Z LEU A 260 UNP Q9AMH9 EXPRESSION TAG SEQADV 2Y2Z GLU A 261 UNP Q9AMH9 EXPRESSION TAG SEQADV 2Y2Z HIS A 262 UNP Q9AMH9 EXPRESSION TAG SEQADV 2Y2Z HIS A 263 UNP Q9AMH9 EXPRESSION TAG SEQADV 2Y2Z HIS A 264 UNP Q9AMH9 EXPRESSION TAG SEQADV 2Y2Z HIS A 265 UNP Q9AMH9 EXPRESSION TAG SEQADV 2Y2Z HIS A 266 UNP Q9AMH9 EXPRESSION TAG SEQADV 2Y2Z HIS A 267 UNP Q9AMH9 EXPRESSION TAG SEQRES 1 A 267 MET ASN GLU ASN GLU PRO VAL SER ILE TRP MET HIS PRO SEQRES 2 A 267 GLU PRO ALA GLY ARG ARG SER ALA ARG SER HIS ARG THR SEQRES 3 A 267 LEU SER ARG ASP GLN ILE VAL ARG ALA ALA VAL LYS VAL SEQRES 4 A 267 ALA ASP THR GLU GLY VAL GLU ALA ALA SER MET ARG ARG SEQRES 5 A 267 VAL ALA ALA GLU LEU GLY ALA GLY THR MET SER LEU TYR SEQRES 6 A 267 TYR TYR VAL PRO THR LYS GLU ASP LEU VAL GLU LEU MET SEQRES 7 A 267 VAL ASP GLU VAL ILE GLY GLU THR ARG LEU PRO ASP ARG SEQRES 8 A 267 PRO GLY PRO ASP TRP ARG ALA ALA LEU THR LEU ALA ALA SEQRES 9 A 267 ASN GLU LYS ARG ALA LEU TRP LEU ARG HIS PRO TRP LEU SEQRES 10 A 267 ALA THR ALA TRP ARG ASN GLY HIS PRO VAL TRP GLY PRO SEQRES 11 A 267 ASN SER LEU ARG GLN GLN GLU PHE VAL LEU GLY THR LEU SEQRES 12 A 267 GLY VAL PHE ASP LEU GLN VAL ASP GLU LEU LEU SER LEU SEQRES 13 A 267 ILE GLY LEU TYR ASN GLY TYR VAL GLU SER PHE VAL ARG SEQRES 14 A 267 ASN GLU VAL GLY TRP LEU GLU GLU ALA ARG ARG THR LYS SEQRES 15 A 267 VAL ASP MET ARG GLU TRP MET ARG ARG SER GLY PRO TYR SEQRES 16 A 267 ALA GLN GLN LEU VAL ASP SER GLY GLU TYR PRO MET PHE SEQRES 17 A 267 ALA ARG VAL LEU ALA GLU THR VAL ALA PRO HIS MET GLY SEQRES 18 A 267 PRO ASP GLN ARG PHE ARG SER GLY LEU GLU ARG LEU LEU SEQRES 19 A 267 ASP SER ILE GLY ALA SER LEU ASP ARG LEU SER PRO PRO SEQRES 20 A 267 GLY ARG SER ALA ALA SER GLU ARG PRO ALA LEU ALA LEU SEQRES 21 A 267 GLU HIS HIS HIS HIS HIS HIS FORMUL 2 HOH *121(H2 O) HELIX 1 1 SER A 28 GLY A 44 1 17 HELIX 2 2 SER A 49 GLY A 58 1 10 HELIX 3 3 GLY A 60 TYR A 66 1 7 HELIX 4 4 THR A 70 GLY A 84 1 15 HELIX 5 5 ASP A 95 HIS A 114 1 20 HELIX 6 6 TRP A 116 TRP A 121 1 6 HELIX 7 7 GLY A 129 VAL A 145 1 17 HELIX 8 8 GLN A 149 LYS A 182 1 34 HELIX 9 9 ASP A 184 SER A 192 1 9 HELIX 10 10 SER A 192 GLY A 203 1 12 HELIX 11 11 TYR A 205 ALA A 217 1 13 HELIX 12 12 GLY A 221 LEU A 244 1 24 SHEET 1 AA 2 ARG A 18 ARG A 19 0 SHEET 2 AA 2 THR A 26 LEU A 27 -1 O LEU A 27 N ARG A 18 CRYST1 116.060 116.060 109.381 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008616 0.004975 0.000000 0.00000 SCALE2 0.000000 0.009949 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009142 0.00000