HEADER TRANSFERASE 17-JAN-11 2Y5S TITLE CRYSTAL STRUCTURE OF BURKHOLDERIA CENOCEPACIA DIHYDROPTEROATE SYNTHASE TITLE 2 COMPLEXED WITH 7,8-DIHYDROPTEROATE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROPTEROATE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DHPS; COMPND 5 EC: 2.5.1.15; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA CENOCEPACIA; SOURCE 3 ORGANISM_TAXID: 95486; SOURCE 4 STRAIN: LMG 16656; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET15BTEV; SOURCE 10 OTHER_DETAILS: BELGIAN CO-ORDINATED COLLECTIONS OF MICRO-ORGANISMS, SOURCE 11 BACTERIA COLLECTION (BCCM/LMG) KEYWDS TRANSFERASE, FOLATE BIOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR R.E.MORGAN,G.O.BATOT,J.M.DEMENT,V.A.RAO,T.C.EADSFORTH,W.N.HUNTER REVDAT 4 20-DEC-23 2Y5S 1 REMARK REVDAT 3 25-APR-12 2Y5S 1 JRNL REMARK VERSN REVDAT 2 27-APR-11 2Y5S 1 HETATM REVDAT 1 26-JAN-11 2Y5S 0 JRNL AUTH R.E.MORGAN,G.O.BATOT,J.M.DEMENT,V.A.RAO,T.C.EADSFORTH, JRNL AUTH 2 W.N.HUNTER JRNL TITL CRYSTAL STRUCTURES OF BURKHOLDERIA CENOCEPACIA JRNL TITL 2 DIHYDROPTEROATE SYNTHASE IN THE APO-FORM AND COMPLEXED WITH JRNL TITL 3 THE PRODUCT 7,8-DIHYDROPTEROATE. JRNL REF BMC STRUCT.BIOL. V. 11 21 2011 JRNL REFN ESSN 1472-6807 JRNL PMID 21554707 JRNL DOI 10.1186/1472-6807-11-21 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 62.11 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 3 NUMBER OF REFLECTIONS : 37961 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2027 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2381 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.39 REMARK 3 BIN R VALUE (WORKING SET) : 0.3040 REMARK 3 BIN FREE R VALUE SET COUNT : 145 REMARK 3 BIN FREE R VALUE : 0.3390 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4142 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 112 REMARK 3 SOLVENT ATOMS : 305 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.35000 REMARK 3 B22 (A**2) : -1.41000 REMARK 3 B33 (A**2) : 2.76000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.174 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.150 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.092 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.010 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4436 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3083 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6036 ; 1.232 ; 2.005 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7436 ; 0.882 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 588 ; 6.002 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 187 ;30.566 ;22.513 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 674 ;13.485 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 55 ;13.637 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 680 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5060 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 887 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2856 ; 0.572 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1143 ; 0.128 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4575 ; 1.052 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1580 ; 1.691 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1448 ; 2.708 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 81 REMARK 3 ORIGIN FOR THE GROUP (A): 56.9477 -6.9779 -7.3704 REMARK 3 T TENSOR REMARK 3 T11: 0.1041 T22: 0.0887 REMARK 3 T33: 0.0743 T12: 0.0166 REMARK 3 T13: -0.0029 T23: -0.0070 REMARK 3 L TENSOR REMARK 3 L11: 4.2418 L22: 2.5512 REMARK 3 L33: 1.5091 L12: -1.5351 REMARK 3 L13: 0.3572 L23: -0.5247 REMARK 3 S TENSOR REMARK 3 S11: 0.2369 S12: 0.5624 S13: -0.0214 REMARK 3 S21: -0.3792 S22: -0.2595 S23: -0.0418 REMARK 3 S31: 0.1550 S32: 0.0093 S33: 0.0226 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 82 A 292 REMARK 3 ORIGIN FOR THE GROUP (A): 53.3039 -10.5661 2.0002 REMARK 3 T TENSOR REMARK 3 T11: 0.0537 T22: 0.0564 REMARK 3 T33: 0.0393 T12: -0.0045 REMARK 3 T13: -0.0134 T23: -0.0029 REMARK 3 L TENSOR REMARK 3 L11: 2.1954 L22: 1.2980 REMARK 3 L33: 0.2614 L12: -0.8753 REMARK 3 L13: 0.0988 L23: -0.0915 REMARK 3 S TENSOR REMARK 3 S11: -0.0023 S12: -0.1152 S13: -0.0376 REMARK 3 S21: 0.0120 S22: 0.0031 S23: -0.1031 REMARK 3 S31: -0.0034 S32: 0.0097 S33: -0.0008 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 85 REMARK 3 ORIGIN FOR THE GROUP (A): 16.8230 5.1533 -8.0197 REMARK 3 T TENSOR REMARK 3 T11: 0.1306 T22: 0.0706 REMARK 3 T33: 0.0765 T12: 0.0179 REMARK 3 T13: -0.0447 T23: -0.0124 REMARK 3 L TENSOR REMARK 3 L11: 4.4368 L22: 2.5812 REMARK 3 L33: 2.5874 L12: -1.4955 REMARK 3 L13: 0.0434 L23: 0.6088 REMARK 3 S TENSOR REMARK 3 S11: 0.2067 S12: 0.5365 S13: -0.0159 REMARK 3 S21: -0.3762 S22: -0.2230 S23: 0.1794 REMARK 3 S31: -0.2821 S32: 0.0670 S33: 0.0164 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 86 B 292 REMARK 3 ORIGIN FOR THE GROUP (A): 20.5543 10.2373 1.5600 REMARK 3 T TENSOR REMARK 3 T11: 0.0559 T22: 0.0480 REMARK 3 T33: 0.0277 T12: 0.0042 REMARK 3 T13: -0.0094 T23: -0.0013 REMARK 3 L TENSOR REMARK 3 L11: 2.5187 L22: 1.6522 REMARK 3 L33: 0.3375 L12: -0.7511 REMARK 3 L13: 0.1144 L23: 0.0781 REMARK 3 S TENSOR REMARK 3 S11: -0.0153 S12: -0.1266 S13: 0.0681 REMARK 3 S21: -0.0081 S22: 0.0053 S23: 0.1521 REMARK 3 S31: -0.0451 S32: -0.0023 S33: 0.0100 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2Y5S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-JAN-11. REMARK 100 THE DEPOSITION ID IS D_1290047011. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-AUG-09 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : SILICON REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41750 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 29.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.37000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1AJ2 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: RESERVOIR: 0.1 M TRIS/HCL PH 8, 10 % REMARK 280 PEG 8000, 0.3 M MGCL2 PROTEIN SOLUTIONS: BCDHPS AT 7.5 MG/ML, 2 REMARK 280 MM DIHYDROPTEROATE, 50 MM TRIS/HCL PH 7.5, 250 MM NACL., PH 7.8 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.83100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.39750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.46000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.39750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.83100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.46000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 11.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASP A 32 REMARK 465 SER A 33 REMARK 465 PHE A 34 REMARK 465 SER A 35 REMARK 465 ASP A 36 REMARK 465 GLY A 37 REMARK 465 GLY A 38 REMARK 465 ARG A 39 REMARK 465 PHE A 40 REMARK 465 LEU A 41 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ASP B 32 REMARK 465 SER B 33 REMARK 465 PHE B 34 REMARK 465 SER B 35 REMARK 465 ASP B 36 REMARK 465 GLY B 37 REMARK 465 GLY B 38 REMARK 465 ARG B 39 REMARK 465 PHE B 40 REMARK 465 LEU B 41 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS B 258 NH2 ARG B 262 1.94 REMARK 500 SG CYS A 258 NH2 ARG A 262 2.00 REMARK 500 NE2 GLN A 10 OD1 ASN A 138 2.06 REMARK 500 OD1 ASP A 202 CL CL A 1294 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 43 48.85 -83.69 REMARK 500 ARG A 43 49.60 -85.33 REMARK 500 ASP A 44 -42.23 -172.51 REMARK 500 ASP A 44 -42.23 -171.74 REMARK 500 ASP A 159 105.26 -161.28 REMARK 500 ALA B 29 52.90 -93.20 REMARK 500 THR B 68 47.23 -84.70 REMARK 500 ASP B 159 112.17 -163.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 78H A 1293 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1294 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1295 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1296 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1297 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1298 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1299 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1301 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1302 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1303 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1304 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1305 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 78H B 1293 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 1294 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1295 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1296 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1297 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1298 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1299 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2Y5J RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BURKHOLDERIA CENOCEPACIA DIHYDROPTEROATE REMARK 900 SYNTHASE. DBREF 2Y5S A 1 292 UNP B4E5F5 B4E5F5_BURCJ 1 292 DBREF 2Y5S B 1 292 UNP B4E5F5 B4E5F5_BURCJ 1 292 SEQADV 2Y5S GLY A -1 UNP B4E5F5 EXPRESSION TAG SEQADV 2Y5S HIS A 0 UNP B4E5F5 EXPRESSION TAG SEQADV 2Y5S THR A 3 UNP B4E5F5 PRO 3 CLONING ARTIFACT SEQADV 2Y5S GLY B -1 UNP B4E5F5 EXPRESSION TAG SEQADV 2Y5S HIS B 0 UNP B4E5F5 EXPRESSION TAG SEQADV 2Y5S THR B 3 UNP B4E5F5 PRO 3 CLONING ARTIFACT SEQRES 1 A 294 GLY HIS MET SER THR PHE LEU PRO ALA PRO LEU GLN CYS SEQRES 2 A 294 GLY ARG PHE GLU LEU THR PHE GLU ARG PRO LEU VAL MET SEQRES 3 A 294 GLY ILE LEU ASN ALA THR PRO ASP SER PHE SER ASP GLY SEQRES 4 A 294 GLY ARG PHE LEU ALA ARG ASP ASP ALA LEU ARG ARG ALA SEQRES 5 A 294 GLU ARG MET ILE ALA GLU GLY ALA ASP LEU LEU ASP ILE SEQRES 6 A 294 GLY GLY GLU SER THR ARG PRO GLY ALA PRO PRO VAL PRO SEQRES 7 A 294 LEU ASP GLU GLU LEU ALA ARG VAL ILE PRO LEU VAL GLU SEQRES 8 A 294 ALA LEU ARG PRO LEU ASN VAL PRO LEU SER ILE ASP THR SEQRES 9 A 294 TYR LYS PRO ALA VAL MET ARG ALA ALA LEU ALA ALA GLY SEQRES 10 A 294 ALA ASP LEU ILE ASN ASP ILE TRP GLY PHE ARG GLN PRO SEQRES 11 A 294 GLY ALA ILE ASP ALA VAL ARG ASP GLY ASN SER GLY LEU SEQRES 12 A 294 CYS ALA MET HIS MET LEU GLY GLU PRO GLN THR MET GLN SEQRES 13 A 294 VAL GLY GLU PRO ASP TYR GLY ASP VAL VAL THR ASP VAL SEQRES 14 A 294 ARG ASP PHE LEU ALA ALA ARG ALA GLN ALA LEU ARG ASP SEQRES 15 A 294 ALA GLY VAL ALA ALA GLU ARG ILE CYS VAL ASP PRO GLY SEQRES 16 A 294 PHE GLY PHE GLY LYS ALA VAL VAL ASP ASP ASN TYR ALA SEQRES 17 A 294 LEU LEU ALA ALA LEU PRO ASP THR ALA PRO ALA ARG PRO SEQRES 18 A 294 ASP GLY ARG ALA TYR PRO ILE LEU ALA GLY MET SER ARG SEQRES 19 A 294 LYS SER MET LEU GLY ALA VAL ILE GLY GLY LYS PRO PRO SEQRES 20 A 294 LEU GLU ARG VAL ALA ALA SER VAL ALA ALA ALA LEU CYS SEQRES 21 A 294 ALA VAL GLU ARG GLY ALA ALA ILE VAL ARG VAL HIS ASP SEQRES 22 A 294 VAL ALA ALA THR VAL ASP ALA LEU SER VAL TRP ASN ALA SEQRES 23 A 294 VAL ARG ALA ALA ALA ARG GLN ARG SEQRES 1 B 294 GLY HIS MET SER THR PHE LEU PRO ALA PRO LEU GLN CYS SEQRES 2 B 294 GLY ARG PHE GLU LEU THR PHE GLU ARG PRO LEU VAL MET SEQRES 3 B 294 GLY ILE LEU ASN ALA THR PRO ASP SER PHE SER ASP GLY SEQRES 4 B 294 GLY ARG PHE LEU ALA ARG ASP ASP ALA LEU ARG ARG ALA SEQRES 5 B 294 GLU ARG MET ILE ALA GLU GLY ALA ASP LEU LEU ASP ILE SEQRES 6 B 294 GLY GLY GLU SER THR ARG PRO GLY ALA PRO PRO VAL PRO SEQRES 7 B 294 LEU ASP GLU GLU LEU ALA ARG VAL ILE PRO LEU VAL GLU SEQRES 8 B 294 ALA LEU ARG PRO LEU ASN VAL PRO LEU SER ILE ASP THR SEQRES 9 B 294 TYR LYS PRO ALA VAL MET ARG ALA ALA LEU ALA ALA GLY SEQRES 10 B 294 ALA ASP LEU ILE ASN ASP ILE TRP GLY PHE ARG GLN PRO SEQRES 11 B 294 GLY ALA ILE ASP ALA VAL ARG ASP GLY ASN SER GLY LEU SEQRES 12 B 294 CYS ALA MET HIS MET LEU GLY GLU PRO GLN THR MET GLN SEQRES 13 B 294 VAL GLY GLU PRO ASP TYR GLY ASP VAL VAL THR ASP VAL SEQRES 14 B 294 ARG ASP PHE LEU ALA ALA ARG ALA GLN ALA LEU ARG ASP SEQRES 15 B 294 ALA GLY VAL ALA ALA GLU ARG ILE CYS VAL ASP PRO GLY SEQRES 16 B 294 PHE GLY PHE GLY LYS ALA VAL VAL ASP ASP ASN TYR ALA SEQRES 17 B 294 LEU LEU ALA ALA LEU PRO ASP THR ALA PRO ALA ARG PRO SEQRES 18 B 294 ASP GLY ARG ALA TYR PRO ILE LEU ALA GLY MET SER ARG SEQRES 19 B 294 LYS SER MET LEU GLY ALA VAL ILE GLY GLY LYS PRO PRO SEQRES 20 B 294 LEU GLU ARG VAL ALA ALA SER VAL ALA ALA ALA LEU CYS SEQRES 21 B 294 ALA VAL GLU ARG GLY ALA ALA ILE VAL ARG VAL HIS ASP SEQRES 22 B 294 VAL ALA ALA THR VAL ASP ALA LEU SER VAL TRP ASN ALA SEQRES 23 B 294 VAL ARG ALA ALA ALA ARG GLN ARG HET 78H A1293 23 HET CL A1294 1 HET EDO A1295 4 HET EDO A1296 4 HET EDO A1297 4 HET EDO A1298 4 HET EDO A1299 4 HET EDO A1300 4 HET EDO A1301 4 HET EDO A1302 4 HET EDO A1303 4 HET EDO A1304 4 HET EDO A1305 4 HET 78H B1293 23 HET CL B1294 1 HET EDO B1295 4 HET EDO B1296 4 HET EDO B1297 4 HET EDO B1298 4 HET EDO B1299 4 HETNAM 78H 7,8-DIHYDROPTEROATE HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 78H 2(C14 H14 N6 O3) FORMUL 4 CL 2(CL 1-) FORMUL 5 EDO 16(C2 H6 O2) FORMUL 23 HOH *305(H2 O) HELIX 1 1 ASP A 44 GLU A 56 1 13 HELIX 2 2 PRO A 76 ARG A 92 1 17 HELIX 3 3 PRO A 93 ASN A 95 5 3 HELIX 4 4 LYS A 104 GLY A 115 1 12 HELIX 5 5 GLY A 129 ARG A 135 1 7 HELIX 6 6 ASP A 162 ALA A 181 1 20 HELIX 7 7 ALA A 184 GLU A 186 5 3 HELIX 8 8 VAL A 201 ALA A 210 1 10 HELIX 9 9 LEU A 211 ALA A 215 5 5 HELIX 10 10 LYS A 233 ALA A 238 1 6 HELIX 11 11 PRO A 244 GLU A 247 5 4 HELIX 12 12 ARG A 248 ARG A 262 1 15 HELIX 13 13 ASP A 271 ARG A 290 1 20 HELIX 14 14 ALA B 42 GLY B 57 1 16 HELIX 15 15 PRO B 76 ARG B 92 1 17 HELIX 16 16 PRO B 93 ASN B 95 5 3 HELIX 17 17 LYS B 104 ALA B 114 1 11 HELIX 18 18 GLY B 129 ARG B 135 1 7 HELIX 19 19 ASP B 162 ALA B 181 1 20 HELIX 20 20 ALA B 184 GLU B 186 5 3 HELIX 21 21 VAL B 201 ALA B 210 1 10 HELIX 22 22 LEU B 211 ALA B 215 5 5 HELIX 23 23 LYS B 233 ALA B 238 1 6 HELIX 24 24 PRO B 244 GLU B 247 5 4 HELIX 25 25 ARG B 248 ARG B 262 1 15 HELIX 26 26 ASP B 271 ARG B 290 1 20 SHEET 1 AA 2 LEU A 9 CYS A 11 0 SHEET 2 AA 2 PHE A 14 LEU A 16 -1 O PHE A 14 N CYS A 11 SHEET 1 AB 8 ILE A 188 ASP A 191 0 SHEET 2 AB 8 GLY A 140 MET A 144 1 O LEU A 141 N CYS A 189 SHEET 3 AB 8 LEU A 118 ASP A 121 1 O ILE A 119 N CYS A 142 SHEET 4 AB 8 LEU A 98 ASP A 101 1 O ILE A 100 N ASN A 120 SHEET 5 AB 8 LEU A 60 GLY A 64 1 O LEU A 61 N SER A 99 SHEET 6 AB 8 LEU A 22 ASN A 28 1 O GLY A 25 N ASP A 62 SHEET 7 AB 8 ILE A 266 VAL A 269 1 O VAL A 267 N MET A 24 SHEET 8 AB 8 LEU A 227 GLY A 229 1 O ALA A 228 N ARG A 268 SHEET 1 AC 2 GLY A 148 GLU A 149 0 SHEET 2 AC 2 GLN A 154 VAL A 155 -1 O GLN A 154 N GLU A 149 SHEET 1 BA 2 LEU B 9 CYS B 11 0 SHEET 2 BA 2 PHE B 14 LEU B 16 -1 O PHE B 14 N CYS B 11 SHEET 1 BB 8 ILE B 188 ASP B 191 0 SHEET 2 BB 8 GLY B 140 MET B 144 1 O LEU B 141 N CYS B 189 SHEET 3 BB 8 LEU B 118 ASP B 121 1 O ILE B 119 N CYS B 142 SHEET 4 BB 8 LEU B 98 ASP B 101 1 O ILE B 100 N ASN B 120 SHEET 5 BB 8 LEU B 60 GLY B 64 1 O LEU B 61 N SER B 99 SHEET 6 BB 8 LEU B 22 ASN B 28 1 O GLY B 25 N ASP B 62 SHEET 7 BB 8 ILE B 266 VAL B 269 1 O VAL B 267 N MET B 24 SHEET 8 BB 8 LEU B 227 ALA B 228 1 O ALA B 228 N ARG B 268 CISPEP 1 SER B 2 THR B 3 0 -7.82 SITE 1 AC1 15 THR A 68 ARG A 69 ASP A 101 ASN A 120 SITE 2 AC1 15 MET A 144 ASP A 191 PHE A 196 GLY A 229 SITE 3 AC1 15 LYS A 233 SER A 234 ARG A 268 EDO A1304 SITE 4 AC1 15 HOH A2099 HOH A2100 HOH A2152 SITE 1 AC2 3 VAL A 201 ASP A 202 HOH A2055 SITE 1 AC3 5 ALA A 199 ASP A 203 EDO A1301 HOH A2104 SITE 2 AC3 5 HOH A2154 SITE 1 AC4 2 ALA A 254 CYS A 258 SITE 1 AC5 6 ARG A 126 MET A 146 LEU A 147 GLY A 148 SITE 2 AC5 6 PHE A 170 HOH A2153 SITE 1 AC6 5 ARG A 109 ASP A 132 LYS A 198 ALA A 199 SITE 2 AC6 5 VAL A 200 SITE 1 AC7 2 ALA A 173 ARG A 174 SITE 1 AC8 1 VAL B 249 SITE 1 AC9 6 ASP A 162 VAL A 163 ASP A 202 ASP A 203 SITE 2 AC9 6 EDO A1295 HOH A2154 SITE 1 BC1 6 PHE A 4 LEU A 5 ALA A 7 ARG A 222 SITE 2 BC1 6 ALA A 223 HOH A2115 SITE 1 BC2 3 GLU A 51 ILE A 54 ALA A 55 SITE 1 BC3 5 ILE A 26 ARG A 268 HIS A 270 78H A1293 SITE 2 BC3 5 HOH A2156 SITE 1 BC4 5 ARG A 69 ILE A 122 TRP A 123 MET A 153 SITE 2 BC4 5 VAL A 155 SITE 1 BC5 15 THR B 68 ARG B 69 ASP B 101 ASN B 120 SITE 2 BC5 15 MET B 144 ASP B 191 PHE B 196 GLY B 229 SITE 3 BC5 15 LYS B 233 SER B 234 ARG B 268 EDO B1297 SITE 4 BC5 15 HOH B2090 HOH B2146 HOH B2148 SITE 1 BC6 4 ARG B 109 VAL B 201 ASP B 202 HOH B2041 SITE 1 BC7 6 ARG B 109 ASP B 132 LYS B 198 ALA B 199 SITE 2 BC7 6 VAL B 200 HOH B2147 SITE 1 BC8 5 ARG B 69 ARG B 232 HIS B 270 EDO B1297 SITE 2 BC8 5 HOH B2148 SITE 1 BC9 4 SER B 234 ARG B 248 78H B1293 EDO B1296 SITE 1 CC1 5 ARG B 126 ALA B 173 ARG B 174 HOH B2051 SITE 2 CC1 5 HOH B2149 SITE 1 CC2 5 ARG B 126 MET B 146 LEU B 147 GLY B 148 SITE 2 CC2 5 HOH B2066 CRYST1 73.662 86.920 88.795 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013576 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011505 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011262 0.00000