HEADER HYDROLASE 27-JAN-11 2Y72 TITLE CRYSTAL STRUCTURE OF THE PKD DOMAIN OF COLLAGENASE G FROM CLOSTRIDIUM TITLE 2 HISTOLYTICUM AT 1.18 ANGSTROM RESOLUTION. COMPND MOL_ID: 1; COMPND 2 MOLECULE: COLLAGENASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: POLYCYSTIC KIDNEY DISEASE (PKD) DOMAIN, RESIDUES 799-880; COMPND 5 SYNONYM: COLLAGENASE G; COMPND 6 EC: 3.4.24.3; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM HISTOLYTICUM; SOURCE 3 ORGANISM_TAXID: 1498; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET15B KEYWDS POLYCYSTIC KIDNEY DISEASE DOMAIN, BETA BARREL, COLLAGEN RECOGNITION KEYWDS 2 DOMAIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR U.ECKHARD,H.BRANDSTETTER REVDAT 4 20-DEC-23 2Y72 1 REMARK REVDAT 3 19-OCT-11 2Y72 1 JRNL REMARK REVDAT 2 05-OCT-11 2Y72 1 ATOM ANISOU TER HETATM REVDAT 2 2 1 MASTER REVDAT 1 28-SEP-11 2Y72 0 JRNL AUTH U.ECKHARD,E.SCHOENAUER,D.NUESS,H.BRANDSTETTER JRNL TITL STRUCTURE OF COLLAGENASE G REVEALS A CHEW-AND -DIGEST JRNL TITL 2 MECHANISM OF BACTERIAL COLLAGENOLYSIS JRNL REF NAT.STRUCT.MOL.BIOL. V. 18 1109 2011 JRNL REFN ISSN 1545-9993 JRNL PMID 21947205 JRNL DOI 10.1038/NSMB.2127 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH U.ECKHARD,H.BRANDSTETTER REMARK 1 TITL POLYCYSTIC KIDNEY DISEASE-LIKE DOMAINS OF CLOSTRIDIAL REMARK 1 TITL 2 COLLAGENASES AND THEIR ROLE IN COLLAGEN RECRUITMENT. REMARK 1 REF BIOL.CHEM V. 392 1039 2011 REMARK 1 REFN ISSN 1431-6730 REMARK 1 PMID 21871007 REMARK 1 DOI 10.1515/BC.2011.099 REMARK 2 REMARK 2 RESOLUTION. 1.18 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.18 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 53797 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.147 REMARK 3 R VALUE (WORKING SET) : 0.146 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2843 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.18 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2884 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 70.33 REMARK 3 BIN R VALUE (WORKING SET) : 0.2070 REMARK 3 BIN FREE R VALUE SET COUNT : 150 REMARK 3 BIN FREE R VALUE : 0.2280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1249 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 364 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 9.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.48000 REMARK 3 B22 (A**2) : -0.05000 REMARK 3 B33 (A**2) : -0.62000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.70000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.037 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.039 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.023 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.108 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1354 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 910 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1850 ; 1.805 ; 1.936 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2226 ; 0.919 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 193 ; 6.387 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 54 ;34.525 ;24.815 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 226 ; 9.563 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ; 9.339 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 211 ; 0.115 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1592 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 276 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 882 ; 2.136 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 378 ; 0.655 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1431 ; 3.341 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 472 ; 4.190 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 411 ; 5.842 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2264 ; 1.695 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 796 A 880 REMARK 3 ORIGIN FOR THE GROUP (A): 3.2486 -5.0779 15.3339 REMARK 3 T TENSOR REMARK 3 T11: 0.0012 T22: 0.0120 REMARK 3 T33: 0.0041 T12: 0.0010 REMARK 3 T13: 0.0002 T23: -0.0008 REMARK 3 L TENSOR REMARK 3 L11: 0.1061 L22: 0.3255 REMARK 3 L33: 0.0997 L12: 0.0998 REMARK 3 L13: 0.0107 L23: 0.0382 REMARK 3 S TENSOR REMARK 3 S11: 0.0025 S12: -0.0022 S13: -0.0026 REMARK 3 S21: -0.0065 S22: 0.0015 S23: -0.0114 REMARK 3 S31: -0.0081 S32: 0.0047 S33: -0.0040 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 796 B 880 REMARK 3 ORIGIN FOR THE GROUP (A): 11.0329 -19.1158 4.3578 REMARK 3 T TENSOR REMARK 3 T11: 0.0018 T22: 0.0115 REMARK 3 T33: 0.0036 T12: -0.0004 REMARK 3 T13: -0.0006 T23: -0.0008 REMARK 3 L TENSOR REMARK 3 L11: 0.1062 L22: 0.2674 REMARK 3 L33: 0.0210 L12: -0.0012 REMARK 3 L13: -0.0185 L23: -0.0686 REMARK 3 S TENSOR REMARK 3 S11: -0.0076 S12: -0.0047 S13: -0.0054 REMARK 3 S21: 0.0037 S22: 0.0076 S23: 0.0028 REMARK 3 S31: 0.0002 S32: 0.0000 S33: 0.0000 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2Y72 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-JAN-11. REMARK 100 THE DEPOSITION ID IS D_1290047159. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-AUG-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98793 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56646 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.180 REMARK 200 RESOLUTION RANGE LOW (A) : 40.510 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.200 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.18 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.30000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2C26 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.5M C3H2O4NA2, 10MM CACL2, PH 7.5, PH REMARK 280 7.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 34.10250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.65000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 34.10250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.65000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 822 NZ REMARK 470 LYS A 827 CE NZ REMARK 470 LYS A 852 NZ REMARK 470 LYS A 861 NZ REMARK 470 LYS B 822 NZ REMARK 470 LYS B 827 CE NZ REMARK 470 LYS B 851 CE NZ REMARK 470 LYS B 861 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2164 O HOH A 2165 0.59 REMARK 500 O HOH B 2175 O HOH B 2176 1.01 REMARK 500 O HOH A 2159 O HOH A 2161 1.11 REMARK 500 OG1 THR A 875 O HOH A 2161 1.13 REMARK 500 O HOH A 2069 O HOH A 2071 1.25 REMARK 500 O HOH B 2162 O HOH B 2164 1.44 REMARK 500 O HOH B 2042 O HOH B 2165 1.49 REMARK 500 O HOH B 2164 O HOH B 2168 1.49 REMARK 500 CG2 THR A 875 O HOH A 2161 1.53 REMARK 500 O HOH A 2131 O HOH A 2133 1.60 REMARK 500 O HOH A 2004 O HOH B 2162 1.68 REMARK 500 NH1 ARG A 842 O HOH A 2099 1.71 REMARK 500 O HOH A 2130 O HOH A 2131 1.79 REMARK 500 O HOH B 2008 O HOH B 2137 1.81 REMARK 500 O HOH B 2070 O HOH B 2075 1.81 REMARK 500 O ILE B 878 O HOH B 2176 1.83 REMARK 500 C GLY A 797 O HOH A 2032 1.85 REMARK 500 C GLY B 797 O HOH B 2028 1.94 REMARK 500 O HOH A 2036 O HOH A 2038 1.95 REMARK 500 O HOH B 2033 O HOH B 2160 1.98 REMARK 500 O GLY A 797 O HOH A 2032 1.99 REMARK 500 O HOH B 2132 O HOH B 2142 2.01 REMARK 500 ND2 ASN B 857 O HOH B 2138 2.01 REMARK 500 O GLY B 797 O HOH B 2028 2.03 REMARK 500 O HOH B 2133 O HOH B 2136 2.04 REMARK 500 O HOH A 2124 O HOH A 2126 2.09 REMARK 500 O HOH A 2035 O HOH A 2148 2.09 REMARK 500 O HOH A 2004 O HOH A 2166 2.12 REMARK 500 O ASN A 857 O HOH A 2131 2.13 REMARK 500 O HOH A 2121 O HOH A 2129 2.13 REMARK 500 OE2 GLU B 824 O HOH B 2066 2.14 REMARK 500 O LYS A 866 O HOH A 2140 2.14 REMARK 500 NH1 ARG A 842 O HOH A 2102 2.16 REMARK 500 CG ASN B 857 O HOH B 2141 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2154 O HOH B 2135 2555 0.87 REMARK 500 O HOH B 2142 O HOH B 2167 2555 1.46 REMARK 500 O HOH A 2044 O HOH A 2099 4546 1.49 REMARK 500 O HOH A 2096 O HOH B 2066 4556 1.59 REMARK 500 O HOH B 2138 O HOH B 2138 2555 1.65 REMARK 500 O HOH B 2133 O HOH B 2133 2555 1.68 REMARK 500 O HOH A 2126 O HOH B 2095 2555 1.72 REMARK 500 O HOH B 2141 O HOH B 2167 2555 1.74 REMARK 500 O HOH A 2154 O HOH B 2175 2555 1.89 REMARK 500 O HOH A 2025 O HOH B 2172 2555 2.09 REMARK 500 O HOH B 2171 O HOH B 2174 2555 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS B 801 CD - CE - NZ ANGL. DEV. = -17.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 825 65.05 -154.44 REMARK 500 ASP B 825 72.93 -157.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2005 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH B2013 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH B2125 DISTANCE = 7.47 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2Y50 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF COLLAGENASE G FROM CLOSTRIDIUM HISTOLYTICUM AT REMARK 900 2.80 ANGSTROM RESOLUTION REMARK 900 RELATED ID: 2Y3U RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF APO COLLAGENASE G FROM CLOSTRIDIUM REMARK 900 HISTOLYTICUM AT 2.55 ANGSTROM RESOLUTION REMARK 900 RELATED ID: 2Y6I RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF COLLAGENASE G FROM CLOSTRIDIUM HISTOLYTICUM IN REMARK 900 COMPLEX WITH ISOAMYLPHOSPHONYL-GLY-PRO-ALA AT 3.25 ANGSTROM REMARK 900 RESOLUTION DBREF 2Y72 A 799 880 UNP Q9X721 Q9X721_CLOHI 799 880 DBREF 2Y72 B 799 880 UNP Q9X721 Q9X721_CLOHI 799 880 SEQADV 2Y72 GLY A 796 UNP Q9X721 EXPRESSION TAG SEQADV 2Y72 GLY A 797 UNP Q9X721 EXPRESSION TAG SEQADV 2Y72 THR A 798 UNP Q9X721 EXPRESSION TAG SEQADV 2Y72 GLY B 796 UNP Q9X721 EXPRESSION TAG SEQADV 2Y72 GLY B 797 UNP Q9X721 EXPRESSION TAG SEQADV 2Y72 THR B 798 UNP Q9X721 EXPRESSION TAG SEQRES 1 A 85 GLY GLY THR ILE ALA LYS VAL THR GLY PRO SER THR GLY SEQRES 2 A 85 ALA VAL GLY ARG ASN ILE GLU PHE SER GLY LYS ASP SER SEQRES 3 A 85 LYS ASP GLU ASP GLY LYS ILE VAL SER TYR ASP TRP ASP SEQRES 4 A 85 PHE GLY ASP GLY ALA THR SER ARG GLY LYS ASN SER VAL SEQRES 5 A 85 HIS ALA TYR LYS LYS ALA GLY THR TYR ASN VAL THR LEU SEQRES 6 A 85 LYS VAL THR ASP ASP LYS GLY ALA THR ALA THR GLU SER SEQRES 7 A 85 PHE THR ILE GLU ILE LYS ASN SEQRES 1 B 85 GLY GLY THR ILE ALA LYS VAL THR GLY PRO SER THR GLY SEQRES 2 B 85 ALA VAL GLY ARG ASN ILE GLU PHE SER GLY LYS ASP SER SEQRES 3 B 85 LYS ASP GLU ASP GLY LYS ILE VAL SER TYR ASP TRP ASP SEQRES 4 B 85 PHE GLY ASP GLY ALA THR SER ARG GLY LYS ASN SER VAL SEQRES 5 B 85 HIS ALA TYR LYS LYS ALA GLY THR TYR ASN VAL THR LEU SEQRES 6 B 85 LYS VAL THR ASP ASP LYS GLY ALA THR ALA THR GLU SER SEQRES 7 B 85 PHE THR ILE GLU ILE LYS ASN FORMUL 3 HOH *364(H2 O) SHEET 1 AA 2 THR A 803 PRO A 805 0 SHEET 2 AA 2 THR B 803 PRO B 805 -1 O GLY B 804 N GLY A 804 SHEET 1 AB 5 THR A 807 ALA A 809 0 SHEET 2 AB 5 THR A 869 LYS A 879 1 O GLU A 877 N GLY A 808 SHEET 3 AB 5 GLY A 854 ASP A 864 -1 O GLY A 854 N ILE A 878 SHEET 4 AB 5 ILE A 828 ASP A 834 -1 N VAL A 829 O THR A 863 SHEET 5 AB 5 THR A 840 ARG A 842 -1 O SER A 841 N TRP A 833 SHEET 1 AC 2 ASN A 813 SER A 817 0 SHEET 2 AC 2 ASN A 845 ALA A 849 -1 O SER A 846 N PHE A 816 SHEET 1 BA 5 THR B 807 ALA B 809 0 SHEET 2 BA 5 THR B 869 LYS B 879 1 O GLU B 877 N GLY B 808 SHEET 3 BA 5 GLY B 854 ASP B 864 -1 O GLY B 854 N ILE B 878 SHEET 4 BA 5 ILE B 828 ASP B 834 -1 N VAL B 829 O THR B 863 SHEET 5 BA 5 THR B 840 ARG B 842 -1 O SER B 841 N TRP B 833 SHEET 1 BB 2 ASN B 813 SER B 817 0 SHEET 2 BB 2 ASN B 845 ALA B 849 -1 O SER B 846 N PHE B 816 CRYST1 68.205 59.300 55.280 90.00 125.61 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014662 0.000000 0.010501 0.00000 SCALE2 0.000000 0.016863 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022251 0.00000