HEADER TRANSFERASE 30-JAN-11 2Y79 TITLE STRUCTURE OF THE FIRST GAF DOMAIN E87A MUTANT OF MYCOBACTERIUM TITLE 2 TUBERCULOSIS DOSS COMPND MOL_ID: 1; COMPND 2 MOLECULE: REDOX SENSOR HISTIDINE KINASE RESPONSE REGULATOR DEVS; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 63-210; COMPND 5 SYNONYM: TWO COMPONENT SENSOR HISTIDINE KINASE DOSS; COMPND 6 EC: 2.7.13.3; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.Y.CHO,H.J.CHO,B.S.KANG REVDAT 3 20-DEC-23 2Y79 1 REMARK LINK REVDAT 2 22-JUN-11 2Y79 1 REVDAT JRNL REVDAT 1 16-FEB-11 2Y79 0 JRNL AUTH H.Y.CHO,H.J.CHO,M.H.KIM,B.S.KANG JRNL TITL BLOCKAGE OF THE CHANNEL TO HEME BY THE E87 SIDE CHAIN IN THE JRNL TITL 2 GAF DOMAIN OF MYCOBACTERIUM TUBERCULOSIS DOSS CONFERS THE JRNL TITL 3 UNIQUE SENSITIVITY OF DOSS TO OXYGEN. JRNL REF FEBS LETT. V. 585 1873 2011 JRNL REFN ISSN 0014-5793 JRNL PMID 21536032 JRNL DOI 10.1016/J.FEBSLET.2011.04.050 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.39 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 28098 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1497 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1769 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.28 REMARK 3 BIN R VALUE (WORKING SET) : 0.2730 REMARK 3 BIN FREE R VALUE SET COUNT : 112 REMARK 3 BIN FREE R VALUE : 0.4210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2280 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 93 REMARK 3 SOLVENT ATOMS : 219 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.04000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.139 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.139 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.091 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.866 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2454 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3376 ; 1.491 ; 2.079 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 301 ; 5.788 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 108 ;34.225 ;22.963 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 361 ;14.285 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;15.908 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 365 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1915 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1203 ; 0.215 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1703 ; 0.302 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 189 ; 0.177 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 3 ; 0.246 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 39 ; 0.199 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.133 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 1 ; 0.061 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1519 ; 1.062 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2401 ; 1.790 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1037 ; 2.429 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 968 ; 3.680 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2Y79 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-JAN-11. REMARK 100 THE DEPOSITION ID IS D_1290047181. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-DEC-08 REMARK 200 TEMPERATURE (KELVIN) : 294 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 6C1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2399 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29661 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 32.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 31.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.32000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2W3D REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 19% PEG 6000, 200 MM CALCIUM ACETATE, REMARK 280 100 MM TRIS PH 7.0. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 17.96600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.48650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.45650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.48650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 17.96600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.45650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -69.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, GLU 87 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN B, GLU 87 TO ALA REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 208 REMARK 465 ALA A 209 REMARK 465 LYS A 210 REMARK 465 GLY B 58 REMARK 465 ALA B 59 REMARK 465 MET B 60 REMARK 465 ASP B 61 REMARK 465 ALA B 209 REMARK 465 LYS B 210 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 91 CG CD NE CZ NH1 NH2 REMARK 470 PRO B 62 N CB CG CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O1 GOL A 1209 O HOH A 2112 1.85 REMARK 500 OG SER A 166 O HOH A 2082 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 148 -11.36 80.40 REMARK 500 ARG A 153 -70.20 -119.01 REMARK 500 ARG A 163 -122.96 54.29 REMARK 500 PRO B 128 92.93 -65.48 REMARK 500 TYR B 148 -10.28 80.20 REMARK 500 ARG B 153 -74.50 -123.76 REMARK 500 GLU B 165 141.99 -173.03 REMARK 500 ASP B 174 60.98 60.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1208 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 80 OD1 REMARK 620 2 ASP A 80 OD2 50.8 REMARK 620 3 ASP A 183 OD1 121.0 118.0 REMARK 620 4 ASP A 183 OD2 75.0 77.2 48.8 REMARK 620 5 HOH A2019 O 87.0 103.0 138.9 156.7 REMARK 620 6 HOH A2020 O 121.0 70.5 89.7 100.7 101.2 REMARK 620 7 HOH A2091 O 74.2 123.4 76.5 76.6 84.4 163.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 500 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 149 NE2 REMARK 620 2 HEM A 500 NA 92.0 REMARK 620 3 HEM A 500 NB 92.7 89.6 REMARK 620 4 HEM A 500 NC 92.2 175.8 90.0 REMARK 620 5 HEM A 500 ND 89.2 90.1 178.1 90.1 REMARK 620 6 HOH A2111 O 174.3 82.5 89.0 93.3 89.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 502 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 149 NE2 REMARK 620 2 HEM B 502 NA 97.4 REMARK 620 3 HEM B 502 NB 92.5 91.9 REMARK 620 4 HEM B 502 NC 88.7 173.7 89.7 REMARK 620 5 HEM B 502 ND 91.2 86.2 176.0 91.8 REMARK 620 6 HOH B2104 O 178.4 81.1 87.7 92.9 88.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1209 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2W3H RELATED DB: PDB REMARK 900 CYANIDE BOUND STRUCTURE OF THE FIRST GAF DOMAIN OF MYCOBACTERIUM REMARK 900 TUBERCULOSIS DOSS REMARK 900 RELATED ID: 2W3F RELATED DB: PDB REMARK 900 REDUCED STRUCTURE OF THE FIRST GAF DOMAIN OF MYCOBACTERIUM REMARK 900 TUBERCULOSIS DOSS REMARK 900 RELATED ID: 2W3E RELATED DB: PDB REMARK 900 OXIDIZED STRUCTURE OF THE FIRST GAF DOMAIN OF MYCOBACTERIUM REMARK 900 TUBERCULOSIS DOSS REMARK 900 RELATED ID: 2W3G RELATED DB: PDB REMARK 900 AIR-OXIDIZED STRUCTURE OF THE FIRST GAF DOMAIN OF MYCOBACTERIUM REMARK 900 TUBERCULOSIS DOSS REMARK 900 RELATED ID: 2W3D RELATED DB: PDB REMARK 900 STRUCTURE OF THE FIRST GAF DOMAIN OF MYCOBACTERIUM TUBERCULOSIS DOSS DBREF 2Y79 A 63 210 UNP P95194 DEVS_MYCTU 63 210 DBREF 2Y79 B 63 210 UNP P95194 DEVS_MYCTU 63 210 SEQADV 2Y79 GLY A 58 UNP P95194 EXPRESSION TAG SEQADV 2Y79 ALA A 59 UNP P95194 EXPRESSION TAG SEQADV 2Y79 MET A 60 UNP P95194 EXPRESSION TAG SEQADV 2Y79 ASP A 61 UNP P95194 EXPRESSION TAG SEQADV 2Y79 PRO A 62 UNP P95194 EXPRESSION TAG SEQADV 2Y79 ALA A 87 UNP GLU 87 ENGINEERED MUTATION SEQADV 2Y79 GLY B 58 UNP P95194 EXPRESSION TAG SEQADV 2Y79 ALA B 59 UNP P95194 EXPRESSION TAG SEQADV 2Y79 MET B 60 UNP P95194 EXPRESSION TAG SEQADV 2Y79 ASP B 61 UNP P95194 EXPRESSION TAG SEQADV 2Y79 PRO B 62 UNP P95194 EXPRESSION TAG SEQADV 2Y79 ALA B 87 UNP GLU 87 ENGINEERED MUTATION SEQRES 1 A 153 GLY ALA MET ASP PRO ASP LEU GLU ALA THR LEU ARG ALA SEQRES 2 A 153 ILE VAL HIS SER ALA THR SER LEU VAL ASP ALA ARG TYR SEQRES 3 A 153 GLY ALA MET ALA VAL HIS ASP ARG GLN HIS ARG VAL LEU SEQRES 4 A 153 HIS PHE VAL TYR GLU GLY ILE ASP GLU GLU THR VAL ARG SEQRES 5 A 153 ARG ILE GLY HIS LEU PRO LYS GLY LEU GLY VAL ILE GLY SEQRES 6 A 153 LEU LEU ILE GLU ASP PRO LYS PRO LEU ARG LEU ASP ASP SEQRES 7 A 153 VAL SER ALA HIS PRO ALA SER ILE GLY PHE PRO PRO TYR SEQRES 8 A 153 HIS PRO PRO MET ARG THR PHE LEU GLY VAL PRO VAL ARG SEQRES 9 A 153 VAL ARG ASP GLU SER PHE GLY THR LEU TYR LEU THR ASP SEQRES 10 A 153 LYS THR ASN GLY GLN PRO PHE SER ASP ASP ASP GLU VAL SEQRES 11 A 153 LEU VAL GLN ALA LEU ALA ALA ALA ALA GLY ILE ALA VAL SEQRES 12 A 153 ALA ASN ALA ARG LEU TYR GLN GLN ALA LYS SEQRES 1 B 153 GLY ALA MET ASP PRO ASP LEU GLU ALA THR LEU ARG ALA SEQRES 2 B 153 ILE VAL HIS SER ALA THR SER LEU VAL ASP ALA ARG TYR SEQRES 3 B 153 GLY ALA MET ALA VAL HIS ASP ARG GLN HIS ARG VAL LEU SEQRES 4 B 153 HIS PHE VAL TYR GLU GLY ILE ASP GLU GLU THR VAL ARG SEQRES 5 B 153 ARG ILE GLY HIS LEU PRO LYS GLY LEU GLY VAL ILE GLY SEQRES 6 B 153 LEU LEU ILE GLU ASP PRO LYS PRO LEU ARG LEU ASP ASP SEQRES 7 B 153 VAL SER ALA HIS PRO ALA SER ILE GLY PHE PRO PRO TYR SEQRES 8 B 153 HIS PRO PRO MET ARG THR PHE LEU GLY VAL PRO VAL ARG SEQRES 9 B 153 VAL ARG ASP GLU SER PHE GLY THR LEU TYR LEU THR ASP SEQRES 10 B 153 LYS THR ASN GLY GLN PRO PHE SER ASP ASP ASP GLU VAL SEQRES 11 B 153 LEU VAL GLN ALA LEU ALA ALA ALA ALA GLY ILE ALA VAL SEQRES 12 B 153 ALA ASN ALA ARG LEU TYR GLN GLN ALA LYS HET HEM A 500 43 HET CA A1208 1 HET GOL A1209 6 HET HEM B 502 43 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETSYN HEM HEME HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 4 CA CA 2+ FORMUL 5 GOL C3 H8 O3 FORMUL 7 HOH *219(H2 O) HELIX 1 1 ASP A 61 VAL A 79 1 19 HELIX 2 2 ASP A 104 GLY A 112 1 9 HELIX 3 3 GLY A 119 ASP A 127 1 9 HELIX 4 4 ASP A 135 HIS A 139 5 5 HELIX 5 5 SER A 182 GLN A 207 1 26 HELIX 6 6 ASP B 63 ASP B 80 1 18 HELIX 7 7 ASP B 104 GLY B 112 1 9 HELIX 8 8 LEU B 118 ASP B 127 1 10 HELIX 9 9 ASP B 135 HIS B 139 5 5 HELIX 10 10 ASN B 177 GLN B 179 5 3 HELIX 11 11 SER B 182 GLN B 207 1 26 SHEET 1 AA 5 VAL A 95 GLU A 101 0 SHEET 2 AA 5 ALA A 81 HIS A 89 -1 O GLY A 84 N GLU A 101 SHEET 3 AA 5 GLU A 165 LYS A 175 -1 O PHE A 167 N HIS A 89 SHEET 4 AA 5 PHE A 155 VAL A 162 -1 O LEU A 156 N LEU A 172 SHEET 5 AA 5 LEU A 131 LEU A 133 -1 O LEU A 131 N GLY A 157 SHEET 1 BA 5 VAL B 95 GLU B 101 0 SHEET 2 BA 5 ALA B 81 HIS B 89 -1 O GLY B 84 N GLU B 101 SHEET 3 BA 5 GLU B 165 LYS B 175 -1 O PHE B 167 N HIS B 89 SHEET 4 BA 5 PHE B 155 VAL B 162 -1 O LEU B 156 N LEU B 172 SHEET 5 BA 5 LEU B 131 LEU B 133 -1 O LEU B 131 N GLY B 157 LINK OD1 ASP A 80 CA CA A1208 1555 1555 2.52 LINK OD2 ASP A 80 CA CA A1208 1555 1555 2.62 LINK NE2 HIS A 149 FE HEM A 500 1555 1555 2.15 LINK OD1 ASP A 183 CA CA A1208 4455 1555 2.88 LINK OD2 ASP A 183 CA CA A1208 4455 1555 2.36 LINK FE HEM A 500 O HOH A2111 1555 1555 2.37 LINK CA CA A1208 O HOH A2019 1555 1555 2.40 LINK CA CA A1208 O HOH A2020 1555 1555 2.05 LINK CA CA A1208 O HOH A2091 1555 4455 2.21 LINK NE2 HIS B 149 FE HEM B 502 1555 1555 2.09 LINK FE HEM B 502 O HOH B2104 1555 1555 2.41 CISPEP 1 GLN B 207 GLN B 208 0 -4.25 SITE 1 AC1 22 GLY A 84 GLU A 101 ILE A 103 ILE A 111 SITE 2 AC1 22 HIS A 113 PRO A 115 LYS A 116 GLY A 117 SITE 3 AC1 22 LEU A 118 GLY A 119 VAL A 120 SER A 142 SITE 4 AC1 22 ILE A 143 GLY A 144 PHE A 145 PRO A 146 SITE 5 AC1 22 HIS A 149 MET A 152 TYR A 171 THR A 173 SITE 6 AC1 22 HOH A2110 HOH A2111 SITE 1 AC2 26 GLY B 84 PHE B 98 TYR B 100 GLU B 101 SITE 2 AC2 26 ILE B 103 ILE B 111 HIS B 113 LEU B 114 SITE 3 AC2 26 PRO B 115 LYS B 116 GLY B 117 LEU B 118 SITE 4 AC2 26 GLY B 119 VAL B 120 SER B 142 ILE B 143 SITE 5 AC2 26 GLY B 144 PHE B 145 PRO B 146 HIS B 149 SITE 6 AC2 26 MET B 152 TYR B 171 HOH B2104 HOH B2105 SITE 7 AC2 26 HOH B2106 HOH B2107 SITE 1 AC3 5 ASP A 80 ASP A 183 HOH A2019 HOH A2020 SITE 2 AC3 5 HOH A2091 SITE 1 AC4 7 ALA A 59 MET A 60 GLU A 65 ARG A 69 SITE 2 AC4 7 HIS A 97 HOH A2112 ARG B 110 CRYST1 35.932 86.913 100.973 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027830 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011506 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009904 0.00000