data_2Y8A # _entry.id 2Y8A # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2Y8A pdb_00002y8a 10.2210/pdb2y8a/pdb PDBE EBI-47271 ? ? WWPDB D_1290047271 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-06-15 2 'Structure model' 1 1 2011-08-31 3 'Structure model' 1 2 2024-05-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Derived calculations' 6 3 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_database_status 5 3 'Structure model' pdbx_struct_conn_angle 6 3 'Structure model' struct_conn 7 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_database_status.status_code_sf' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 16 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 17 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 18 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 19 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 20 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 21 3 'Structure model' '_pdbx_struct_conn_angle.value' 22 3 'Structure model' '_struct_conn.pdbx_dist_value' 23 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 24 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 25 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 26 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 27 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 28 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 29 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 30 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 31 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 32 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 33 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 34 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 35 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 36 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 37 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2Y8A _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2011-02-03 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 2Y87 unspecified ;NATIVE VIM-7. STRUCTURAL AND COMPUTATIONAL INVESTIGATIONS OF VIM-7: INSIGHTS INTO THE SUBSTRATE SPECIFICITY OF VIM METALLO-BETA-LACTAMASES ; PDB 2Y8B unspecified ;VIM-7 WITH OXIDISED. STRUCTURAL AND COMPUTATIONAL INVESTIGATIONS OF VIM-7: INSIGHTS INTO THE SUBSTRATE SPECIFICITY OF VIM METALLO-BETA-LACTAMASES ; # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Saradhi, P.' 1 'Leiros, H.-K.S.' 2 'Ahmad, R.' 3 'Spencer, J.' 4 'Leiros, I.' 5 'Walsh, T.R.' 6 'Sundsfjord, A.' 7 'Samuelsen, O.' 8 # _citation.id primary _citation.title 'Structural and Computational Investigations of Vim- 7: Insights Into the Substrate Specificity of Vim Metallo-Beta-Lactamases' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 411 _citation.page_first 174 _citation.page_last ? _citation.year 2011 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21645522 _citation.pdbx_database_id_DOI 10.1016/J.JMB.2011.05.035 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Saradhi, P.' 1 ? primary 'Leiros, H.-K.S.' 2 ? primary 'Ahmad, R.' 3 ? primary 'Spencer, J.' 4 ? primary 'Leiros, I.' 5 ? primary 'Walsh, T.R.' 6 ? primary 'Sundsfjord, A.' 7 ? primary 'Samuelsen, O.' 8 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man METALLO-B-LACTAMASE 28141.846 1 ? ? ? ? 2 non-polymer syn 'ZINC ION' 65.409 2 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 4 non-polymer syn 'UNKNOWN ATOM OR ION' ? 1 ? ? ? ? 5 water nat water 18.015 68 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'METALLO-BETA-LACTAMASE VIM-7, METALLO-BETA-LACTAMASE' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MFQIRSFLVGISAFVMAVLGSAAYSAQPGGEYPTVDDIPVGEVRLYKIGDGVWSHIATQKLGDTVYSSNGLIVRDADELL LIDTAWGAKNTVALLAEIEKQIGLPVTRSISTHFHDDRVGGVDVLRAAGVATYTSPLTRQLAEAAGNEVPAHSLKALSSS GDVVRFGPVEVFYPGAAHSGDNLVVYVPAVRVLFGGCAVHEASRESAGNVADANLAEWPATIKRIQQRYPEAEVVIPGHG LPGGLELLQHTTNVVKTHKVRPVAE ; _entity_poly.pdbx_seq_one_letter_code_can ;MFQIRSFLVGISAFVMAVLGSAAYSAQPGGEYPTVDDIPVGEVRLYKIGDGVWSHIATQKLGDTVYSSNGLIVRDADELL LIDTAWGAKNTVALLAEIEKQIGLPVTRSISTHFHDDRVGGVDVLRAAGVATYTSPLTRQLAEAAGNEVPAHSLKALSSS GDVVRFGPVEVFYPGAAHSGDNLVVYVPAVRVLFGGCAVHEASRESAGNVADANLAEWPATIKRIQQRYPEAEVVIPGHG LPGGLELLQHTTNVVKTHKVRPVAE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ZINC ION' ZN 3 'MAGNESIUM ION' MG 4 'UNKNOWN ATOM OR ION' UNX 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 PHE n 1 3 GLN n 1 4 ILE n 1 5 ARG n 1 6 SER n 1 7 PHE n 1 8 LEU n 1 9 VAL n 1 10 GLY n 1 11 ILE n 1 12 SER n 1 13 ALA n 1 14 PHE n 1 15 VAL n 1 16 MET n 1 17 ALA n 1 18 VAL n 1 19 LEU n 1 20 GLY n 1 21 SER n 1 22 ALA n 1 23 ALA n 1 24 TYR n 1 25 SER n 1 26 ALA n 1 27 GLN n 1 28 PRO n 1 29 GLY n 1 30 GLY n 1 31 GLU n 1 32 TYR n 1 33 PRO n 1 34 THR n 1 35 VAL n 1 36 ASP n 1 37 ASP n 1 38 ILE n 1 39 PRO n 1 40 VAL n 1 41 GLY n 1 42 GLU n 1 43 VAL n 1 44 ARG n 1 45 LEU n 1 46 TYR n 1 47 LYS n 1 48 ILE n 1 49 GLY n 1 50 ASP n 1 51 GLY n 1 52 VAL n 1 53 TRP n 1 54 SER n 1 55 HIS n 1 56 ILE n 1 57 ALA n 1 58 THR n 1 59 GLN n 1 60 LYS n 1 61 LEU n 1 62 GLY n 1 63 ASP n 1 64 THR n 1 65 VAL n 1 66 TYR n 1 67 SER n 1 68 SER n 1 69 ASN n 1 70 GLY n 1 71 LEU n 1 72 ILE n 1 73 VAL n 1 74 ARG n 1 75 ASP n 1 76 ALA n 1 77 ASP n 1 78 GLU n 1 79 LEU n 1 80 LEU n 1 81 LEU n 1 82 ILE n 1 83 ASP n 1 84 THR n 1 85 ALA n 1 86 TRP n 1 87 GLY n 1 88 ALA n 1 89 LYS n 1 90 ASN n 1 91 THR n 1 92 VAL n 1 93 ALA n 1 94 LEU n 1 95 LEU n 1 96 ALA n 1 97 GLU n 1 98 ILE n 1 99 GLU n 1 100 LYS n 1 101 GLN n 1 102 ILE n 1 103 GLY n 1 104 LEU n 1 105 PRO n 1 106 VAL n 1 107 THR n 1 108 ARG n 1 109 SER n 1 110 ILE n 1 111 SER n 1 112 THR n 1 113 HIS n 1 114 PHE n 1 115 HIS n 1 116 ASP n 1 117 ASP n 1 118 ARG n 1 119 VAL n 1 120 GLY n 1 121 GLY n 1 122 VAL n 1 123 ASP n 1 124 VAL n 1 125 LEU n 1 126 ARG n 1 127 ALA n 1 128 ALA n 1 129 GLY n 1 130 VAL n 1 131 ALA n 1 132 THR n 1 133 TYR n 1 134 THR n 1 135 SER n 1 136 PRO n 1 137 LEU n 1 138 THR n 1 139 ARG n 1 140 GLN n 1 141 LEU n 1 142 ALA n 1 143 GLU n 1 144 ALA n 1 145 ALA n 1 146 GLY n 1 147 ASN n 1 148 GLU n 1 149 VAL n 1 150 PRO n 1 151 ALA n 1 152 HIS n 1 153 SER n 1 154 LEU n 1 155 LYS n 1 156 ALA n 1 157 LEU n 1 158 SER n 1 159 SER n 1 160 SER n 1 161 GLY n 1 162 ASP n 1 163 VAL n 1 164 VAL n 1 165 ARG n 1 166 PHE n 1 167 GLY n 1 168 PRO n 1 169 VAL n 1 170 GLU n 1 171 VAL n 1 172 PHE n 1 173 TYR n 1 174 PRO n 1 175 GLY n 1 176 ALA n 1 177 ALA n 1 178 HIS n 1 179 SER n 1 180 GLY n 1 181 ASP n 1 182 ASN n 1 183 LEU n 1 184 VAL n 1 185 VAL n 1 186 TYR n 1 187 VAL n 1 188 PRO n 1 189 ALA n 1 190 VAL n 1 191 ARG n 1 192 VAL n 1 193 LEU n 1 194 PHE n 1 195 GLY n 1 196 GLY n 1 197 CYS n 1 198 ALA n 1 199 VAL n 1 200 HIS n 1 201 GLU n 1 202 ALA n 1 203 SER n 1 204 ARG n 1 205 GLU n 1 206 SER n 1 207 ALA n 1 208 GLY n 1 209 ASN n 1 210 VAL n 1 211 ALA n 1 212 ASP n 1 213 ALA n 1 214 ASN n 1 215 LEU n 1 216 ALA n 1 217 GLU n 1 218 TRP n 1 219 PRO n 1 220 ALA n 1 221 THR n 1 222 ILE n 1 223 LYS n 1 224 ARG n 1 225 ILE n 1 226 GLN n 1 227 GLN n 1 228 ARG n 1 229 TYR n 1 230 PRO n 1 231 GLU n 1 232 ALA n 1 233 GLU n 1 234 VAL n 1 235 VAL n 1 236 ILE n 1 237 PRO n 1 238 GLY n 1 239 HIS n 1 240 GLY n 1 241 LEU n 1 242 PRO n 1 243 GLY n 1 244 GLY n 1 245 LEU n 1 246 GLU n 1 247 LEU n 1 248 LEU n 1 249 GLN n 1 250 HIS n 1 251 THR n 1 252 THR n 1 253 ASN n 1 254 VAL n 1 255 VAL n 1 256 LYS n 1 257 THR n 1 258 HIS n 1 259 LYS n 1 260 VAL n 1 261 ARG n 1 262 PRO n 1 263 VAL n 1 264 ALA n 1 265 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'PSEUDOMONAS AERUGINOSA' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 287 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 UNX non-polymer . 'UNKNOWN ATOM OR ION' ? ? ? VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 0 ? ? ? A . n A 1 2 PHE 2 1 ? ? ? A . n A 1 3 GLN 3 2 ? ? ? A . n A 1 4 ILE 4 3 ? ? ? A . n A 1 5 ARG 5 4 ? ? ? A . n A 1 6 SER 6 5 ? ? ? A . n A 1 7 PHE 7 6 ? ? ? A . n A 1 8 LEU 8 7 ? ? ? A . n A 1 9 VAL 9 8 ? ? ? A . n A 1 10 GLY 10 9 ? ? ? A . n A 1 11 ILE 11 10 ? ? ? A . n A 1 12 SER 12 11 ? ? ? A . n A 1 13 ALA 13 12 ? ? ? A . n A 1 14 PHE 14 13 ? ? ? A . n A 1 15 VAL 15 14 ? ? ? A . n A 1 16 MET 16 15 ? ? ? A . n A 1 17 ALA 17 16 ? ? ? A . n A 1 18 VAL 18 17 ? ? ? A . n A 1 19 LEU 19 18 ? ? ? A . n A 1 20 GLY 20 19 ? ? ? A . n A 1 21 SER 21 20 ? ? ? A . n A 1 22 ALA 22 21 ? ? ? A . n A 1 23 ALA 23 22 ? ? ? A . n A 1 24 TYR 24 23 ? ? ? A . n A 1 25 SER 25 24 ? ? ? A . n A 1 26 ALA 26 25 ? ? ? A . n A 1 27 GLN 27 26 ? ? ? A . n A 1 28 PRO 28 27 ? ? ? A . n A 1 29 GLY 29 28 ? ? ? A . n A 1 30 GLY 30 29 ? ? ? A . n A 1 31 GLU 31 30 30 GLU GLU A . n A 1 32 TYR 32 31 31 TYR TYR A . n A 1 33 PRO 33 32 32 PRO PRO A . n A 1 34 THR 34 33 33 THR THR A . n A 1 35 VAL 35 34 34 VAL VAL A . n A 1 36 ASP 36 35 35 ASP ASP A . n A 1 37 ASP 37 36 36 ASP ASP A . n A 1 38 ILE 38 37 37 ILE ILE A . n A 1 39 PRO 39 38 38 PRO PRO A . n A 1 40 VAL 40 39 39 VAL VAL A . n A 1 41 GLY 41 40 40 GLY GLY A . n A 1 42 GLU 42 41 41 GLU GLU A . n A 1 43 VAL 43 42 42 VAL VAL A . n A 1 44 ARG 44 43 43 ARG ARG A . n A 1 45 LEU 45 44 44 LEU LEU A . n A 1 46 TYR 46 45 45 TYR TYR A . n A 1 47 LYS 47 47 47 LYS LYS A . n A 1 48 ILE 48 48 48 ILE ILE A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 ASP 50 50 50 ASP ASP A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 VAL 52 52 52 VAL VAL A . n A 1 53 TRP 53 53 53 TRP TRP A . n A 1 54 SER 54 54 54 SER SER A . n A 1 55 HIS 55 55 55 HIS HIS A . n A 1 56 ILE 56 56 56 ILE ILE A . n A 1 57 ALA 57 57 57 ALA ALA A . n A 1 58 THR 58 58 58 THR THR A . n A 1 59 GLN 59 59 59 GLN GLN A . n A 1 60 LYS 60 60 60 LYS LYS A . n A 1 61 LEU 61 61 61 LEU LEU A . n A 1 62 GLY 62 62 62 GLY GLY A . n A 1 63 ASP 63 63 63 ASP ASP A . n A 1 64 THR 64 64 64 THR THR A . n A 1 65 VAL 65 66 66 VAL VAL A . n A 1 66 TYR 66 67 67 TYR TYR A . n A 1 67 SER 67 68 68 SER SER A . n A 1 68 SER 68 69 69 SER SER A . n A 1 69 ASN 69 70 70 ASN ASN A . n A 1 70 GLY 70 71 71 GLY GLY A . n A 1 71 LEU 71 72 72 LEU LEU A . n A 1 72 ILE 72 73 73 ILE ILE A . n A 1 73 VAL 73 74 74 VAL VAL A . n A 1 74 ARG 74 75 75 ARG ARG A . n A 1 75 ASP 75 76 76 ASP ASP A . n A 1 76 ALA 76 77 77 ALA ALA A . n A 1 77 ASP 77 78 78 ASP ASP A . n A 1 78 GLU 78 79 79 GLU GLU A . n A 1 79 LEU 79 80 80 LEU LEU A . n A 1 80 LEU 80 81 81 LEU LEU A . n A 1 81 LEU 81 82 82 LEU LEU A . n A 1 82 ILE 82 83 83 ILE ILE A . n A 1 83 ASP 83 84 84 ASP ASP A . n A 1 84 THR 84 85 85 THR THR A . n A 1 85 ALA 85 86 86 ALA ALA A . n A 1 86 TRP 86 87 87 TRP TRP A . n A 1 87 GLY 87 88 88 GLY GLY A . n A 1 88 ALA 88 89 89 ALA ALA A . n A 1 89 LYS 89 90 90 LYS LYS A . n A 1 90 ASN 90 91 91 ASN ASN A . n A 1 91 THR 91 92 92 THR THR A . n A 1 92 VAL 92 93 93 VAL VAL A . n A 1 93 ALA 93 94 94 ALA ALA A . n A 1 94 LEU 94 95 95 LEU LEU A . n A 1 95 LEU 95 96 96 LEU LEU A . n A 1 96 ALA 96 97 97 ALA ALA A . n A 1 97 GLU 97 98 98 GLU GLU A . n A 1 98 ILE 98 99 99 ILE ILE A . n A 1 99 GLU 99 100 100 GLU GLU A . n A 1 100 LYS 100 102 102 LYS LYS A . n A 1 101 GLN 101 103 103 GLN GLN A . n A 1 102 ILE 102 104 104 ILE ILE A . n A 1 103 GLY 103 105 105 GLY GLY A . n A 1 104 LEU 104 106 106 LEU LEU A . n A 1 105 PRO 105 107 107 PRO PRO A . n A 1 106 VAL 106 109 109 VAL VAL A . n A 1 107 THR 107 110 110 THR THR A . n A 1 108 ARG 108 111 111 ARG ARG A . n A 1 109 SER 109 112 112 SER SER A . n A 1 110 ILE 110 113 113 ILE ILE A . n A 1 111 SER 111 114 114 SER SER A . n A 1 112 THR 112 115 115 THR THR A . n A 1 113 HIS 113 116 116 HIS HIS A . n A 1 114 PHE 114 117 117 PHE PHE A . n A 1 115 HIS 115 118 118 HIS HIS A . n A 1 116 ASP 116 119 119 ASP ASP A . n A 1 117 ASP 117 120 120 ASP ASP A . n A 1 118 ARG 118 121 121 ARG ARG A . n A 1 119 VAL 119 122 122 VAL VAL A . n A 1 120 GLY 120 123 123 GLY GLY A . n A 1 121 GLY 121 124 124 GLY GLY A . n A 1 122 VAL 122 125 125 VAL VAL A . n A 1 123 ASP 123 126 126 ASP ASP A . n A 1 124 VAL 124 127 127 VAL VAL A . n A 1 125 LEU 125 128 128 LEU LEU A . n A 1 126 ARG 126 129 129 ARG ARG A . n A 1 127 ALA 127 130 130 ALA ALA A . n A 1 128 ALA 128 131 131 ALA ALA A . n A 1 129 GLY 129 133 133 GLY GLY A . n A 1 130 VAL 130 134 134 VAL VAL A . n A 1 131 ALA 131 135 135 ALA ALA A . n A 1 132 THR 132 136 136 THR THR A . n A 1 133 TYR 133 137 137 TYR TYR A . n A 1 134 THR 134 138 138 THR THR A . n A 1 135 SER 135 139 139 SER SER A . n A 1 136 PRO 136 140 140 PRO PRO A . n A 1 137 LEU 137 141 141 LEU LEU A . n A 1 138 THR 138 142 142 THR THR A . n A 1 139 ARG 139 143 143 ARG ARG A . n A 1 140 GLN 140 144 144 GLN GLN A . n A 1 141 LEU 141 145 145 LEU LEU A . n A 1 142 ALA 142 146 146 ALA ALA A . n A 1 143 GLU 143 147 147 GLU GLU A . n A 1 144 ALA 144 148 148 ALA ALA A . n A 1 145 ALA 145 149 149 ALA ALA A . n A 1 146 GLY 146 150 150 GLY GLY A . n A 1 147 ASN 147 165 165 ASN ASN A . n A 1 148 GLU 148 166 166 GLU GLU A . n A 1 149 VAL 149 167 167 VAL VAL A . n A 1 150 PRO 150 168 168 PRO PRO A . n A 1 151 ALA 151 169 169 ALA ALA A . n A 1 152 HIS 152 170 170 HIS HIS A . n A 1 153 SER 153 171 171 SER SER A . n A 1 154 LEU 154 172 172 LEU LEU A . n A 1 155 LYS 155 173 173 LYS LYS A . n A 1 156 ALA 156 174 174 ALA ALA A . n A 1 157 LEU 157 175 175 LEU LEU A . n A 1 158 SER 158 176 176 SER SER A . n A 1 159 SER 159 177 177 SER SER A . n A 1 160 SER 160 178 178 SER SER A . n A 1 161 GLY 161 179 179 GLY GLY A . n A 1 162 ASP 162 180 180 ASP ASP A . n A 1 163 VAL 163 181 181 VAL VAL A . n A 1 164 VAL 164 182 182 VAL VAL A . n A 1 165 ARG 165 183 183 ARG ARG A . n A 1 166 PHE 166 184 184 PHE PHE A . n A 1 167 GLY 167 185 185 GLY GLY A . n A 1 168 PRO 168 186 186 PRO PRO A . n A 1 169 VAL 169 187 187 VAL VAL A . n A 1 170 GLU 170 188 188 GLU GLU A . n A 1 171 VAL 171 189 189 VAL VAL A . n A 1 172 PHE 172 190 190 PHE PHE A . n A 1 173 TYR 173 191 191 TYR TYR A . n A 1 174 PRO 174 192 192 PRO PRO A . n A 1 175 GLY 175 193 193 GLY GLY A . n A 1 176 ALA 176 194 194 ALA ALA A . n A 1 177 ALA 177 195 195 ALA ALA A . n A 1 178 HIS 178 196 196 HIS HIS A . n A 1 179 SER 179 197 197 SER SER A . n A 1 180 GLY 180 198 198 GLY GLY A . n A 1 181 ASP 181 199 199 ASP ASP A . n A 1 182 ASN 182 200 200 ASN ASN A . n A 1 183 LEU 183 201 201 LEU LEU A . n A 1 184 VAL 184 202 202 VAL VAL A . n A 1 185 VAL 185 203 203 VAL VAL A . n A 1 186 TYR 186 204 204 TYR TYR A . n A 1 187 VAL 187 205 205 VAL VAL A . n A 1 188 PRO 188 209 209 PRO PRO A . n A 1 189 ALA 189 210 210 ALA ALA A . n A 1 190 VAL 190 211 211 VAL VAL A . n A 1 191 ARG 191 215 215 ARG ARG A . n A 1 192 VAL 192 216 216 VAL VAL A . n A 1 193 LEU 193 217 217 LEU LEU A . n A 1 194 PHE 194 218 218 PHE PHE A . n A 1 195 GLY 195 219 219 GLY GLY A . n A 1 196 GLY 196 220 220 GLY GLY A . n A 1 197 CYS 197 221 221 CYS CYS A . n A 1 198 ALA 198 222 222 ALA ALA A . n A 1 199 VAL 199 223 223 VAL VAL A . n A 1 200 HIS 200 224 224 HIS HIS A . n A 1 201 GLU 201 225 225 GLU GLU A . n A 1 202 ALA 202 226 226 ALA ALA A . n A 1 203 SER 203 227 227 SER SER A . n A 1 204 ARG 204 228 228 ARG ARG A . n A 1 205 GLU 205 229 229 GLU GLU A . n A 1 206 SER 206 230 230 SER SER A . n A 1 207 ALA 207 231 231 ALA ALA A . n A 1 208 GLY 208 232 232 GLY GLY A . n A 1 209 ASN 209 233 233 ASN ASN A . n A 1 210 VAL 210 234 234 VAL VAL A . n A 1 211 ALA 211 235 235 ALA ALA A . n A 1 212 ASP 212 236 236 ASP ASP A . n A 1 213 ALA 213 237 237 ALA ALA A . n A 1 214 ASN 214 238 238 ASN ASN A . n A 1 215 LEU 215 239 239 LEU LEU A . n A 1 216 ALA 216 240 240 ALA ALA A . n A 1 217 GLU 217 241 241 GLU GLU A . n A 1 218 TRP 218 242 242 TRP TRP A . n A 1 219 PRO 219 243 243 PRO PRO A . n A 1 220 ALA 220 244 244 ALA ALA A . n A 1 221 THR 221 245 245 THR THR A . n A 1 222 ILE 222 246 246 ILE ILE A . n A 1 223 LYS 223 247 247 LYS LYS A . n A 1 224 ARG 224 248 248 ARG ARG A . n A 1 225 ILE 225 249 249 ILE ILE A . n A 1 226 GLN 226 250 250 GLN GLN A . n A 1 227 GLN 227 251 251 GLN GLN A . n A 1 228 ARG 228 252 252 ARG ARG A . n A 1 229 TYR 229 253 253 TYR TYR A . n A 1 230 PRO 230 254 254 PRO PRO A . n A 1 231 GLU 231 255 255 GLU GLU A . n A 1 232 ALA 232 256 256 ALA ALA A . n A 1 233 GLU 233 257 257 GLU GLU A . n A 1 234 VAL 234 258 258 VAL VAL A . n A 1 235 VAL 235 259 259 VAL VAL A . n A 1 236 ILE 236 260 260 ILE ILE A . n A 1 237 PRO 237 261 261 PRO PRO A . n A 1 238 GLY 238 262 262 GLY GLY A . n A 1 239 HIS 239 263 263 HIS HIS A . n A 1 240 GLY 240 264 264 GLY GLY A . n A 1 241 LEU 241 265 265 LEU LEU A . n A 1 242 PRO 242 277 277 PRO PRO A . n A 1 243 GLY 243 278 278 GLY GLY A . n A 1 244 GLY 244 279 279 GLY GLY A . n A 1 245 LEU 245 280 280 LEU LEU A . n A 1 246 GLU 246 281 281 GLU GLU A . n A 1 247 LEU 247 282 282 LEU LEU A . n A 1 248 LEU 248 283 283 LEU LEU A . n A 1 249 GLN 249 284 284 GLN GLN A . n A 1 250 HIS 250 285 285 HIS HIS A . n A 1 251 THR 251 286 286 THR THR A . n A 1 252 THR 252 287 287 THR THR A . n A 1 253 ASN 253 288 288 ASN ASN A . n A 1 254 VAL 254 289 289 VAL VAL A . n A 1 255 VAL 255 290 290 VAL VAL A . n A 1 256 LYS 256 291 291 LYS LYS A . n A 1 257 THR 257 292 ? ? ? A . n A 1 258 HIS 258 293 ? ? ? A . n A 1 259 LYS 259 294 ? ? ? A . n A 1 260 VAL 260 295 ? ? ? A . n A 1 261 ARG 261 296 ? ? ? A . n A 1 262 PRO 262 297 ? ? ? A . n A 1 263 VAL 263 298 ? ? ? A . n A 1 264 ALA 264 299 ? ? ? A . n A 1 265 GLU 265 300 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN 1 1292 1292 ZN ZN A . C 2 ZN 1 1293 1293 ZN ZN A . D 3 MG 1 1294 1294 MG MG A . E 4 UNX 1 1295 1295 UNX UNX A . F 5 HOH 1 2001 2001 HOH HOH A . F 5 HOH 2 2002 2002 HOH HOH A . F 5 HOH 3 2003 2003 HOH HOH A . F 5 HOH 4 2004 2004 HOH HOH A . F 5 HOH 5 2005 2005 HOH HOH A . F 5 HOH 6 2006 2006 HOH HOH A . F 5 HOH 7 2007 2007 HOH HOH A . F 5 HOH 8 2008 2008 HOH HOH A . F 5 HOH 9 2009 2009 HOH HOH A . F 5 HOH 10 2010 2010 HOH HOH A . F 5 HOH 11 2011 2011 HOH HOH A . F 5 HOH 12 2012 2012 HOH HOH A . F 5 HOH 13 2013 2013 HOH HOH A . F 5 HOH 14 2014 2014 HOH HOH A . F 5 HOH 15 2015 2015 HOH HOH A . F 5 HOH 16 2016 2016 HOH HOH A . F 5 HOH 17 2017 2017 HOH HOH A . F 5 HOH 18 2018 2018 HOH HOH A . F 5 HOH 19 2019 2019 HOH HOH A . F 5 HOH 20 2020 2020 HOH HOH A . F 5 HOH 21 2021 2021 HOH HOH A . F 5 HOH 22 2022 2022 HOH HOH A . F 5 HOH 23 2023 2023 HOH HOH A . F 5 HOH 24 2024 2024 HOH HOH A . F 5 HOH 25 2025 2025 HOH HOH A . F 5 HOH 26 2026 2026 HOH HOH A . F 5 HOH 27 2027 2027 HOH HOH A . F 5 HOH 28 2028 2028 HOH HOH A . F 5 HOH 29 2029 2029 HOH HOH A . F 5 HOH 30 2030 2030 HOH HOH A . F 5 HOH 31 2031 2031 HOH HOH A . F 5 HOH 32 2032 2032 HOH HOH A . F 5 HOH 33 2033 2033 HOH HOH A . F 5 HOH 34 2034 2034 HOH HOH A . F 5 HOH 35 2035 2035 HOH HOH A . F 5 HOH 36 2036 2036 HOH HOH A . F 5 HOH 37 2037 2037 HOH HOH A . F 5 HOH 38 2038 2038 HOH HOH A . F 5 HOH 39 2039 2039 HOH HOH A . F 5 HOH 40 2040 2040 HOH HOH A . F 5 HOH 41 2041 2041 HOH HOH A . F 5 HOH 42 2042 2042 HOH HOH A . F 5 HOH 43 2043 2043 HOH HOH A . F 5 HOH 44 2044 2044 HOH HOH A . F 5 HOH 45 2045 2045 HOH HOH A . F 5 HOH 46 2046 2046 HOH HOH A . F 5 HOH 47 2047 2047 HOH HOH A . F 5 HOH 48 2048 2048 HOH HOH A . F 5 HOH 49 2049 2049 HOH HOH A . F 5 HOH 50 2050 2050 HOH HOH A . F 5 HOH 51 2051 2051 HOH HOH A . F 5 HOH 52 2052 2052 HOH HOH A . F 5 HOH 53 2053 2053 HOH HOH A . F 5 HOH 54 2054 2054 HOH HOH A . F 5 HOH 55 2055 2055 HOH HOH A . F 5 HOH 56 2056 2056 HOH HOH A . F 5 HOH 57 2057 2057 HOH HOH A . F 5 HOH 58 2058 2058 HOH HOH A . F 5 HOH 59 2059 2059 HOH HOH A . F 5 HOH 60 2060 2060 HOH HOH A . F 5 HOH 61 2061 2061 HOH HOH A . F 5 HOH 62 2062 2062 HOH HOH A . F 5 HOH 63 2063 2063 HOH HOH A . F 5 HOH 64 2064 2064 HOH HOH A . F 5 HOH 65 2065 2065 HOH HOH A . F 5 HOH 66 2066 2066 HOH HOH A . F 5 HOH 67 2067 2067 HOH HOH A . F 5 HOH 68 2068 2068 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A ASP 63 ? CB ? A ASP 63 CB 2 1 Y 0 A ASP 63 ? CG ? A ASP 63 CG 3 1 Y 0 A ASP 63 ? OD1 ? A ASP 63 OD1 4 1 Y 0 A ASP 63 ? OD2 ? A ASP 63 OD2 5 1 Y 0 A LYS 173 ? CD ? A LYS 155 CD 6 1 Y 0 A LYS 173 ? CE ? A LYS 155 CE 7 1 Y 0 A LYS 173 ? NZ ? A LYS 155 NZ 8 1 Y 0 A LYS 247 ? CD ? A LYS 223 CD 9 1 Y 0 A LYS 247 ? CE ? A LYS 223 CE 10 1 Y 0 A LYS 247 ? NZ ? A LYS 223 NZ # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.5.0102 ? 1 XDS 'data reduction' . ? 2 XDS 'data scaling' . ? 3 # _cell.entry_id 2Y8A _cell.length_a 70.138 _cell.length_b 70.138 _cell.length_c 47.529 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Y8A _symmetry.space_group_name_H-M 'P 43' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 # _exptl.entry_id 2Y8A _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.97 _exptl_crystal.density_percent_sol 57 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;22.5-23.5% POLYETHYLENE GLYCOL MONOMETHYL ETHERS (PEG MME) 2K, 0.1 M CALCIUM ACETATE, 0.1 M SODIUM CACODYLATE PH 5.0, 8 MM BETA-MERCAPTOETHANOL ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date 2010-02-15 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.240 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID29' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID29 _diffrn_source.pdbx_wavelength 1.240 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2Y8A _reflns.observed_criterion_sigma_I 8.1 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.00 _reflns.d_resolution_high 2.33 _reflns.number_obs 10017 _reflns.number_all ? _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs 0.11 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 8.10 _reflns.B_iso_Wilson_estimate 33.2 _reflns.pdbx_redundancy 4.5 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.33 _reflns_shell.d_res_low 2.46 _reflns_shell.percent_possible_all 99.5 _reflns_shell.Rmerge_I_obs 0.50 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.20 _reflns_shell.pdbx_redundancy 3.9 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2Y8A _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 8997 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 25.00 _refine.ls_d_res_high 2.33 _refine.ls_percent_reflns_obs 99.73 _refine.ls_R_factor_obs 0.19338 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.18673 _refine.ls_R_factor_R_free 0.25405 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.0 _refine.ls_number_reflns_R_free 1000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.942 _refine.correlation_coeff_Fo_to_Fc_free 0.882 _refine.B_iso_mean 19.847 _refine.aniso_B[1][1] -0.95 _refine.aniso_B[2][2] -0.95 _refine.aniso_B[3][3] 1.90 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct OTHER _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.428 _refine.pdbx_overall_ESU_R_Free 0.271 _refine.overall_SU_ML 0.180 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 7.494 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1698 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 68 _refine_hist.number_atoms_total 1770 _refine_hist.d_res_high 2.33 _refine_hist.d_res_low 25.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.009 0.022 ? 1715 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 1111 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.106 1.951 ? 2329 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.858 3.000 ? 2707 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.317 5.000 ? 216 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 34.745 23.889 ? 72 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 13.508 15.000 ? 255 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 12.512 15.000 ? 11 'X-RAY DIFFRACTION' ? r_chiral_restr 0.070 0.200 ? 276 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.021 ? 1895 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 329 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.491 1.500 ? 1109 'X-RAY DIFFRACTION' ? r_mcbond_other 0.067 1.500 ? 461 'X-RAY DIFFRACTION' ? r_mcangle_it 0.925 2.000 ? 1770 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 1.239 3.000 ? 606 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 2.188 4.500 ? 559 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.330 _refine_ls_shell.d_res_low 2.390 _refine_ls_shell.number_reflns_R_work 652 _refine_ls_shell.R_factor_R_work 0.276 _refine_ls_shell.percent_reflns_obs 98.76 _refine_ls_shell.R_factor_R_free 0.333 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 66 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _database_PDB_matrix.entry_id 2Y8A _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 2Y8A _struct.title ;VIM-7 with Oxidised. Structural and computational investigations of VIM-7: Insights into the substrate specificity of VIM metallo-beta- lactamases ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2Y8A _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'HYDROLASE, CEPHALOSPORINS, ANTIBIOTIC RECOGNITION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 5 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q840P9_PSEAE _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession Q840P9 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2Y8A _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 265 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q840P9 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 265 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 0 _struct_ref_seq.pdbx_auth_seq_align_end 300 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 34 ? ILE A 38 ? THR A 33 ILE A 37 5 ? 5 HELX_P HELX_P2 2 GLY A 87 ? ILE A 102 ? GLY A 88 ILE A 104 1 ? 16 HELX_P HELX_P3 3 HIS A 115 ? GLY A 120 ? HIS A 118 GLY A 123 1 ? 6 HELX_P HELX_P4 4 GLY A 121 ? ALA A 128 ? GLY A 124 ALA A 131 1 ? 8 HELX_P HELX_P5 5 SER A 135 ? ALA A 145 ? SER A 139 ALA A 149 1 ? 11 HELX_P HELX_P6 6 CYS A 197 ? VAL A 199 ? CYS A 221 VAL A 223 5 ? 3 HELX_P HELX_P7 7 GLU A 217 ? TYR A 229 ? GLU A 241 TYR A 253 1 ? 13 HELX_P HELX_P8 8 LEU A 245 ? LYS A 256 ? LEU A 280 LYS A 291 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A HIS 113 NE2 ? ? ? 1_555 B ZN . ZN ? ? A HIS 116 A ZN 1292 1_555 ? ? ? ? ? ? ? 2.143 ? ? metalc2 metalc ? ? A HIS 115 ND1 ? ? ? 1_555 B ZN . ZN ? ? A HIS 118 A ZN 1292 1_555 ? ? ? ? ? ? ? 2.068 ? ? metalc3 metalc ? ? A ASP 116 OD2 ? ? ? 1_555 D MG . MG ? ? A ASP 119 A MG 1294 1_555 ? ? ? ? ? ? ? 2.458 ? ? metalc4 metalc ? ? A ASP 116 OD1 ? ? ? 1_555 D MG . MG ? ? A ASP 119 A MG 1294 1_555 ? ? ? ? ? ? ? 2.763 ? ? metalc5 metalc ? ? A ASP 117 OD2 ? ? ? 1_555 C ZN . ZN ? ? A ASP 120 A ZN 1293 1_555 ? ? ? ? ? ? ? 2.050 ? ? metalc6 metalc ? ? A ASN 147 OD1 ? ? ? 1_555 D MG . MG ? ? A ASN 165 A MG 1294 1_555 ? ? ? ? ? ? ? 2.364 ? ? metalc7 metalc ? ? A HIS 178 NE2 ? ? ? 1_555 B ZN . ZN ? ? A HIS 196 A ZN 1292 1_555 ? ? ? ? ? ? ? 2.019 ? ? metalc8 metalc ? ? A CYS 197 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 221 A ZN 1293 1_555 ? ? ? ? ? ? ? 2.167 ? ? metalc9 metalc ? ? A HIS 239 NE2 ? ? ? 1_555 C ZN . ZN ? ? A HIS 263 A ZN 1293 1_555 ? ? ? ? ? ? ? 2.099 ? ? metalc10 metalc ? ? B ZN . ZN ? ? ? 1_555 E UNX . UNK ? ? A ZN 1292 A UNX 1295 1_555 ? ? ? ? ? ? ? 2.270 ? ? metalc11 metalc ? ? C ZN . ZN ? ? ? 1_555 E UNX . UNK ? ? A ZN 1293 A UNX 1295 1_555 ? ? ? ? ? ? ? 2.336 ? ? metalc12 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 1294 A HOH 2033 1_555 ? ? ? ? ? ? ? 2.491 ? ? metalc13 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 1294 A HOH 2034 1_555 ? ? ? ? ? ? ? 2.344 ? ? metalc14 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 1294 A HOH 2040 1_555 ? ? ? ? ? ? ? 1.772 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NE2 ? A HIS 113 ? A HIS 116 ? 1_555 ZN ? B ZN . ? A ZN 1292 ? 1_555 ND1 ? A HIS 115 ? A HIS 118 ? 1_555 99.4 ? 2 NE2 ? A HIS 113 ? A HIS 116 ? 1_555 ZN ? B ZN . ? A ZN 1292 ? 1_555 NE2 ? A HIS 178 ? A HIS 196 ? 1_555 106.9 ? 3 ND1 ? A HIS 115 ? A HIS 118 ? 1_555 ZN ? B ZN . ? A ZN 1292 ? 1_555 NE2 ? A HIS 178 ? A HIS 196 ? 1_555 108.6 ? 4 NE2 ? A HIS 113 ? A HIS 116 ? 1_555 ZN ? B ZN . ? A ZN 1292 ? 1_555 UNK ? E UNX . ? A UNX 1295 ? 1_555 127.0 ? 5 ND1 ? A HIS 115 ? A HIS 118 ? 1_555 ZN ? B ZN . ? A ZN 1292 ? 1_555 UNK ? E UNX . ? A UNX 1295 ? 1_555 115.2 ? 6 NE2 ? A HIS 178 ? A HIS 196 ? 1_555 ZN ? B ZN . ? A ZN 1292 ? 1_555 UNK ? E UNX . ? A UNX 1295 ? 1_555 98.8 ? 7 OD2 ? A ASP 116 ? A ASP 119 ? 1_555 MG ? D MG . ? A MG 1294 ? 1_555 OD1 ? A ASP 116 ? A ASP 119 ? 1_555 49.1 ? 8 OD2 ? A ASP 116 ? A ASP 119 ? 1_555 MG ? D MG . ? A MG 1294 ? 1_555 OD1 ? A ASN 147 ? A ASN 165 ? 1_555 121.5 ? 9 OD1 ? A ASP 116 ? A ASP 119 ? 1_555 MG ? D MG . ? A MG 1294 ? 1_555 OD1 ? A ASN 147 ? A ASN 165 ? 1_555 76.2 ? 10 OD2 ? A ASP 116 ? A ASP 119 ? 1_555 MG ? D MG . ? A MG 1294 ? 1_555 O ? F HOH . ? A HOH 2033 ? 1_555 75.7 ? 11 OD1 ? A ASP 116 ? A ASP 119 ? 1_555 MG ? D MG . ? A MG 1294 ? 1_555 O ? F HOH . ? A HOH 2033 ? 1_555 121.0 ? 12 OD1 ? A ASN 147 ? A ASN 165 ? 1_555 MG ? D MG . ? A MG 1294 ? 1_555 O ? F HOH . ? A HOH 2033 ? 1_555 162.6 ? 13 OD2 ? A ASP 116 ? A ASP 119 ? 1_555 MG ? D MG . ? A MG 1294 ? 1_555 O ? F HOH . ? A HOH 2034 ? 1_555 68.0 ? 14 OD1 ? A ASP 116 ? A ASP 119 ? 1_555 MG ? D MG . ? A MG 1294 ? 1_555 O ? F HOH . ? A HOH 2034 ? 1_555 86.2 ? 15 OD1 ? A ASN 147 ? A ASN 165 ? 1_555 MG ? D MG . ? A MG 1294 ? 1_555 O ? F HOH . ? A HOH 2034 ? 1_555 92.7 ? 16 O ? F HOH . ? A HOH 2033 ? 1_555 MG ? D MG . ? A MG 1294 ? 1_555 O ? F HOH . ? A HOH 2034 ? 1_555 91.7 ? 17 OD2 ? A ASP 116 ? A ASP 119 ? 1_555 MG ? D MG . ? A MG 1294 ? 1_555 O ? F HOH . ? A HOH 2040 ? 1_555 96.1 ? 18 OD1 ? A ASP 116 ? A ASP 119 ? 1_555 MG ? D MG . ? A MG 1294 ? 1_555 O ? F HOH . ? A HOH 2040 ? 1_555 75.8 ? 19 OD1 ? A ASN 147 ? A ASN 165 ? 1_555 MG ? D MG . ? A MG 1294 ? 1_555 O ? F HOH . ? A HOH 2040 ? 1_555 87.5 ? 20 O ? F HOH . ? A HOH 2033 ? 1_555 MG ? D MG . ? A MG 1294 ? 1_555 O ? F HOH . ? A HOH 2040 ? 1_555 93.6 ? 21 O ? F HOH . ? A HOH 2034 ? 1_555 MG ? D MG . ? A MG 1294 ? 1_555 O ? F HOH . ? A HOH 2040 ? 1_555 161.4 ? 22 OD2 ? A ASP 117 ? A ASP 120 ? 1_555 ZN ? C ZN . ? A ZN 1293 ? 1_555 SG ? A CYS 197 ? A CYS 221 ? 1_555 114.2 ? 23 OD2 ? A ASP 117 ? A ASP 120 ? 1_555 ZN ? C ZN . ? A ZN 1293 ? 1_555 NE2 ? A HIS 239 ? A HIS 263 ? 1_555 91.0 ? 24 SG ? A CYS 197 ? A CYS 221 ? 1_555 ZN ? C ZN . ? A ZN 1293 ? 1_555 NE2 ? A HIS 239 ? A HIS 263 ? 1_555 100.6 ? 25 OD2 ? A ASP 117 ? A ASP 120 ? 1_555 ZN ? C ZN . ? A ZN 1293 ? 1_555 UNK ? E UNX . ? A UNX 1295 ? 1_555 108.4 ? 26 SG ? A CYS 197 ? A CYS 221 ? 1_555 ZN ? C ZN . ? A ZN 1293 ? 1_555 UNK ? E UNX . ? A UNX 1295 ? 1_555 117.0 ? 27 NE2 ? A HIS 239 ? A HIS 263 ? 1_555 ZN ? C ZN . ? A ZN 1293 ? 1_555 UNK ? E UNX . ? A UNX 1295 ? 1_555 123.1 ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 7 ? AB ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? anti-parallel AA 4 5 ? parallel AA 5 6 ? parallel AA 6 7 ? parallel AB 1 2 ? anti-parallel AB 2 3 ? anti-parallel AB 3 4 ? anti-parallel AB 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 VAL A 43 ? GLY A 49 ? VAL A 42 GLY A 49 AA 2 VAL A 52 ? LEU A 61 ? VAL A 52 LEU A 61 AA 3 THR A 64 ? ASP A 75 ? THR A 64 ASP A 76 AA 4 GLU A 78 ? ILE A 82 ? GLU A 79 ILE A 83 AA 5 VAL A 106 ? ILE A 110 ? VAL A 109 ILE A 113 AA 6 ALA A 131 ? THR A 134 ? ALA A 135 THR A 138 AA 7 HIS A 152 ? SER A 153 ? HIS A 170 SER A 171 AB 1 ASP A 162 ? PHE A 166 ? ASP A 180 PHE A 184 AB 2 VAL A 169 ? TYR A 173 ? VAL A 187 TYR A 191 AB 3 VAL A 184 ? VAL A 187 ? VAL A 202 VAL A 205 AB 4 VAL A 192 ? GLY A 196 ? VAL A 216 GLY A 220 AB 5 VAL A 234 ? PRO A 237 ? VAL A 258 PRO A 261 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N ILE A 48 ? N ILE A 48 O VAL A 52 ? O VAL A 52 AA 2 3 N LEU A 61 ? N LEU A 61 O THR A 64 ? O THR A 64 AA 3 4 N ASP A 75 ? N ASP A 76 O GLU A 78 ? O GLU A 79 AA 4 5 O LEU A 79 ? O LEU A 80 N THR A 107 ? N THR A 110 AA 5 6 N SER A 109 ? N SER A 112 O ALA A 131 ? O ALA A 135 AA 6 7 N THR A 134 ? N THR A 138 O HIS A 152 ? O HIS A 170 AB 1 2 N PHE A 166 ? N PHE A 184 O VAL A 169 ? O VAL A 187 AB 2 3 N PHE A 172 ? N PHE A 190 O VAL A 184 ? O VAL A 202 AB 3 4 N VAL A 187 ? N VAL A 205 O VAL A 192 ? O VAL A 216 AB 4 5 N LEU A 193 ? N LEU A 217 O VAL A 234 ? O VAL A 258 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ZN 1292 ? 3 'BINDING SITE FOR RESIDUE ZN A 1292' AC2 Software A ZN 1293 ? 3 'BINDING SITE FOR RESIDUE ZN A 1293' AC3 Software A MG 1294 ? 5 'BINDING SITE FOR RESIDUE MG A 1294' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 HIS A 113 ? HIS A 116 . ? 1_555 ? 2 AC1 3 HIS A 115 ? HIS A 118 . ? 1_555 ? 3 AC1 3 HIS A 178 ? HIS A 196 . ? 1_555 ? 4 AC2 3 ASP A 117 ? ASP A 120 . ? 1_555 ? 5 AC2 3 CYS A 197 ? CYS A 221 . ? 1_555 ? 6 AC2 3 HIS A 239 ? HIS A 263 . ? 1_555 ? 7 AC3 5 ASP A 116 ? ASP A 119 . ? 1_555 ? 8 AC3 5 ASN A 147 ? ASN A 165 . ? 1_555 ? 9 AC3 5 HOH F . ? HOH A 2033 . ? 1_555 ? 10 AC3 5 HOH F . ? HOH A 2034 . ? 1_555 ? 11 AC3 5 HOH F . ? HOH A 2040 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 NZ A LYS 47 ? ? O A HOH 2006 ? ? 1.86 2 1 O A HOH 2006 ? ? O A HOH 2007 ? ? 2.12 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C A THR 64 ? ? N A VAL 66 ? ? 1.605 1.336 0.269 0.023 Y 2 1 C A GLY 150 ? ? N A ASN 165 ? ? 1.564 1.336 0.228 0.023 Y 3 1 C A VAL 205 ? ? N A PRO 209 ? ? 1.461 1.338 0.123 0.019 Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA A GLU 100 ? ? C A GLU 100 ? ? N A LYS 102 ? ? 134.84 117.20 17.64 2.20 Y 2 1 O A GLU 100 ? ? C A GLU 100 ? ? N A LYS 102 ? ? 102.92 122.70 -19.78 1.60 Y 3 1 C A GLU 100 ? ? N A LYS 102 ? ? CA A LYS 102 ? ? 148.94 121.70 27.24 2.50 Y 4 1 CA A PRO 107 ? ? C A PRO 107 ? ? N A VAL 109 ? ? 134.87 117.20 17.67 2.20 Y 5 1 O A PRO 107 ? ? C A PRO 107 ? ? N A VAL 109 ? ? 104.68 122.70 -18.02 1.60 Y 6 1 C A PRO 107 ? ? N A VAL 109 ? ? CA A VAL 109 ? ? 137.16 121.70 15.46 2.50 Y 7 1 O A GLY 150 ? ? C A GLY 150 ? ? N A ASN 165 ? ? 108.02 122.70 -14.68 1.60 Y 8 1 O A VAL 211 ? ? C A VAL 211 ? ? N A ARG 215 ? ? 109.00 122.70 -13.70 1.60 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 77 ? ? 58.47 -120.95 2 1 ASP A 84 ? ? 67.06 148.42 3 1 TRP A 87 ? ? 70.06 64.43 4 1 HIS A 116 ? ? -174.12 -175.56 5 1 ALA A 174 ? ? 82.50 5.39 6 1 ALA A 195 ? ? -164.20 -104.92 # loop_ _pdbx_validate_main_chain_plane.id _pdbx_validate_main_chain_plane.PDB_model_num _pdbx_validate_main_chain_plane.auth_comp_id _pdbx_validate_main_chain_plane.auth_asym_id _pdbx_validate_main_chain_plane.auth_seq_id _pdbx_validate_main_chain_plane.PDB_ins_code _pdbx_validate_main_chain_plane.label_alt_id _pdbx_validate_main_chain_plane.improper_torsion_angle 1 1 GLY A 150 ? ? 21.99 2 1 VAL A 211 ? ? -14.33 # loop_ _pdbx_validate_polymer_linkage.id _pdbx_validate_polymer_linkage.PDB_model_num _pdbx_validate_polymer_linkage.auth_atom_id_1 _pdbx_validate_polymer_linkage.auth_asym_id_1 _pdbx_validate_polymer_linkage.auth_comp_id_1 _pdbx_validate_polymer_linkage.auth_seq_id_1 _pdbx_validate_polymer_linkage.PDB_ins_code_1 _pdbx_validate_polymer_linkage.label_alt_id_1 _pdbx_validate_polymer_linkage.auth_atom_id_2 _pdbx_validate_polymer_linkage.auth_asym_id_2 _pdbx_validate_polymer_linkage.auth_comp_id_2 _pdbx_validate_polymer_linkage.auth_seq_id_2 _pdbx_validate_polymer_linkage.PDB_ins_code_2 _pdbx_validate_polymer_linkage.label_alt_id_2 _pdbx_validate_polymer_linkage.dist 1 1 C A TYR 45 ? ? N A LYS 47 ? ? 1.72 2 1 C A THR 64 ? ? N A VAL 66 ? ? 1.60 # _pdbx_entry_details.entry_id 2Y8A _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details 'THE AUTHOR SUGGESTS THE IDENTITY OF THE UNX ION IS SULPHUR' _pdbx_entry_details.sequence_details ;AUTHOR DEFINED DISCONTINUOUS RESIDUE NUMBERING. THE SEQUENCE IS NUMBERED ACCORDING TO THE BBL NUMBERING SCHEME (REFERENCE GARAU, G. ET AL (2004). UPDATE OF THE STANDARD NUMBERING SCHEME FOR CLASS B B -LACTAMASES. ANTIMICROB. AGENTS CHEMOTHER. 48, 2347-9.) HENCE GIVING INCONSECUTIVE NUMBERING OF RESIDUES. ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 0 ? A MET 1 2 1 Y 1 A PHE 1 ? A PHE 2 3 1 Y 1 A GLN 2 ? A GLN 3 4 1 Y 1 A ILE 3 ? A ILE 4 5 1 Y 1 A ARG 4 ? A ARG 5 6 1 Y 1 A SER 5 ? A SER 6 7 1 Y 1 A PHE 6 ? A PHE 7 8 1 Y 1 A LEU 7 ? A LEU 8 9 1 Y 1 A VAL 8 ? A VAL 9 10 1 Y 1 A GLY 9 ? A GLY 10 11 1 Y 1 A ILE 10 ? A ILE 11 12 1 Y 1 A SER 11 ? A SER 12 13 1 Y 1 A ALA 12 ? A ALA 13 14 1 Y 1 A PHE 13 ? A PHE 14 15 1 Y 1 A VAL 14 ? A VAL 15 16 1 Y 1 A MET 15 ? A MET 16 17 1 Y 1 A ALA 16 ? A ALA 17 18 1 Y 1 A VAL 17 ? A VAL 18 19 1 Y 1 A LEU 18 ? A LEU 19 20 1 Y 1 A GLY 19 ? A GLY 20 21 1 Y 1 A SER 20 ? A SER 21 22 1 Y 1 A ALA 21 ? A ALA 22 23 1 Y 1 A ALA 22 ? A ALA 23 24 1 Y 1 A TYR 23 ? A TYR 24 25 1 Y 1 A SER 24 ? A SER 25 26 1 Y 1 A ALA 25 ? A ALA 26 27 1 Y 1 A GLN 26 ? A GLN 27 28 1 Y 1 A PRO 27 ? A PRO 28 29 1 Y 1 A GLY 28 ? A GLY 29 30 1 Y 1 A GLY 29 ? A GLY 30 31 1 Y 1 A THR 292 ? A THR 257 32 1 Y 1 A HIS 293 ? A HIS 258 33 1 Y 1 A LYS 294 ? A LYS 259 34 1 Y 1 A VAL 295 ? A VAL 260 35 1 Y 1 A ARG 296 ? A ARG 261 36 1 Y 1 A PRO 297 ? A PRO 262 37 1 Y 1 A VAL 298 ? A VAL 263 38 1 Y 1 A ALA 299 ? A ALA 264 39 1 Y 1 A GLU 300 ? A GLU 265 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 MG MG MG N N 250 PHE N N N N 251 PHE CA C N S 252 PHE C C N N 253 PHE O O N N 254 PHE CB C N N 255 PHE CG C Y N 256 PHE CD1 C Y N 257 PHE CD2 C Y N 258 PHE CE1 C Y N 259 PHE CE2 C Y N 260 PHE CZ C Y N 261 PHE OXT O N N 262 PHE H H N N 263 PHE H2 H N N 264 PHE HA H N N 265 PHE HB2 H N N 266 PHE HB3 H N N 267 PHE HD1 H N N 268 PHE HD2 H N N 269 PHE HE1 H N N 270 PHE HE2 H N N 271 PHE HZ H N N 272 PHE HXT H N N 273 PRO N N N N 274 PRO CA C N S 275 PRO C C N N 276 PRO O O N N 277 PRO CB C N N 278 PRO CG C N N 279 PRO CD C N N 280 PRO OXT O N N 281 PRO H H N N 282 PRO HA H N N 283 PRO HB2 H N N 284 PRO HB3 H N N 285 PRO HG2 H N N 286 PRO HG3 H N N 287 PRO HD2 H N N 288 PRO HD3 H N N 289 PRO HXT H N N 290 SER N N N N 291 SER CA C N S 292 SER C C N N 293 SER O O N N 294 SER CB C N N 295 SER OG O N N 296 SER OXT O N N 297 SER H H N N 298 SER H2 H N N 299 SER HA H N N 300 SER HB2 H N N 301 SER HB3 H N N 302 SER HG H N N 303 SER HXT H N N 304 THR N N N N 305 THR CA C N S 306 THR C C N N 307 THR O O N N 308 THR CB C N R 309 THR OG1 O N N 310 THR CG2 C N N 311 THR OXT O N N 312 THR H H N N 313 THR H2 H N N 314 THR HA H N N 315 THR HB H N N 316 THR HG1 H N N 317 THR HG21 H N N 318 THR HG22 H N N 319 THR HG23 H N N 320 THR HXT H N N 321 TRP N N N N 322 TRP CA C N S 323 TRP C C N N 324 TRP O O N N 325 TRP CB C N N 326 TRP CG C Y N 327 TRP CD1 C Y N 328 TRP CD2 C Y N 329 TRP NE1 N Y N 330 TRP CE2 C Y N 331 TRP CE3 C Y N 332 TRP CZ2 C Y N 333 TRP CZ3 C Y N 334 TRP CH2 C Y N 335 TRP OXT O N N 336 TRP H H N N 337 TRP H2 H N N 338 TRP HA H N N 339 TRP HB2 H N N 340 TRP HB3 H N N 341 TRP HD1 H N N 342 TRP HE1 H N N 343 TRP HE3 H N N 344 TRP HZ2 H N N 345 TRP HZ3 H N N 346 TRP HH2 H N N 347 TRP HXT H N N 348 TYR N N N N 349 TYR CA C N S 350 TYR C C N N 351 TYR O O N N 352 TYR CB C N N 353 TYR CG C Y N 354 TYR CD1 C Y N 355 TYR CD2 C Y N 356 TYR CE1 C Y N 357 TYR CE2 C Y N 358 TYR CZ C Y N 359 TYR OH O N N 360 TYR OXT O N N 361 TYR H H N N 362 TYR H2 H N N 363 TYR HA H N N 364 TYR HB2 H N N 365 TYR HB3 H N N 366 TYR HD1 H N N 367 TYR HD2 H N N 368 TYR HE1 H N N 369 TYR HE2 H N N 370 TYR HH H N N 371 TYR HXT H N N 372 VAL N N N N 373 VAL CA C N S 374 VAL C C N N 375 VAL O O N N 376 VAL CB C N N 377 VAL CG1 C N N 378 VAL CG2 C N N 379 VAL OXT O N N 380 VAL H H N N 381 VAL H2 H N N 382 VAL HA H N N 383 VAL HB H N N 384 VAL HG11 H N N 385 VAL HG12 H N N 386 VAL HG13 H N N 387 VAL HG21 H N N 388 VAL HG22 H N N 389 VAL HG23 H N N 390 VAL HXT H N N 391 ZN ZN ZN N N 392 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 SER N CA sing N N 277 SER N H sing N N 278 SER N H2 sing N N 279 SER CA C sing N N 280 SER CA CB sing N N 281 SER CA HA sing N N 282 SER C O doub N N 283 SER C OXT sing N N 284 SER CB OG sing N N 285 SER CB HB2 sing N N 286 SER CB HB3 sing N N 287 SER OG HG sing N N 288 SER OXT HXT sing N N 289 THR N CA sing N N 290 THR N H sing N N 291 THR N H2 sing N N 292 THR CA C sing N N 293 THR CA CB sing N N 294 THR CA HA sing N N 295 THR C O doub N N 296 THR C OXT sing N N 297 THR CB OG1 sing N N 298 THR CB CG2 sing N N 299 THR CB HB sing N N 300 THR OG1 HG1 sing N N 301 THR CG2 HG21 sing N N 302 THR CG2 HG22 sing N N 303 THR CG2 HG23 sing N N 304 THR OXT HXT sing N N 305 TRP N CA sing N N 306 TRP N H sing N N 307 TRP N H2 sing N N 308 TRP CA C sing N N 309 TRP CA CB sing N N 310 TRP CA HA sing N N 311 TRP C O doub N N 312 TRP C OXT sing N N 313 TRP CB CG sing N N 314 TRP CB HB2 sing N N 315 TRP CB HB3 sing N N 316 TRP CG CD1 doub Y N 317 TRP CG CD2 sing Y N 318 TRP CD1 NE1 sing Y N 319 TRP CD1 HD1 sing N N 320 TRP CD2 CE2 doub Y N 321 TRP CD2 CE3 sing Y N 322 TRP NE1 CE2 sing Y N 323 TRP NE1 HE1 sing N N 324 TRP CE2 CZ2 sing Y N 325 TRP CE3 CZ3 doub Y N 326 TRP CE3 HE3 sing N N 327 TRP CZ2 CH2 doub Y N 328 TRP CZ2 HZ2 sing N N 329 TRP CZ3 CH2 sing Y N 330 TRP CZ3 HZ3 sing N N 331 TRP CH2 HH2 sing N N 332 TRP OXT HXT sing N N 333 TYR N CA sing N N 334 TYR N H sing N N 335 TYR N H2 sing N N 336 TYR CA C sing N N 337 TYR CA CB sing N N 338 TYR CA HA sing N N 339 TYR C O doub N N 340 TYR C OXT sing N N 341 TYR CB CG sing N N 342 TYR CB HB2 sing N N 343 TYR CB HB3 sing N N 344 TYR CG CD1 doub Y N 345 TYR CG CD2 sing Y N 346 TYR CD1 CE1 sing Y N 347 TYR CD1 HD1 sing N N 348 TYR CD2 CE2 doub Y N 349 TYR CD2 HD2 sing N N 350 TYR CE1 CZ doub Y N 351 TYR CE1 HE1 sing N N 352 TYR CE2 CZ sing Y N 353 TYR CE2 HE2 sing N N 354 TYR CZ OH sing N N 355 TYR OH HH sing N N 356 TYR OXT HXT sing N N 357 VAL N CA sing N N 358 VAL N H sing N N 359 VAL N H2 sing N N 360 VAL CA C sing N N 361 VAL CA CB sing N N 362 VAL CA HA sing N N 363 VAL C O doub N N 364 VAL C OXT sing N N 365 VAL CB CG1 sing N N 366 VAL CB CG2 sing N N 367 VAL CB HB sing N N 368 VAL CG1 HG11 sing N N 369 VAL CG1 HG12 sing N N 370 VAL CG1 HG13 sing N N 371 VAL CG2 HG21 sing N N 372 VAL CG2 HG22 sing N N 373 VAL CG2 HG23 sing N N 374 VAL OXT HXT sing N N 375 # _atom_sites.entry_id 2Y8A _atom_sites.fract_transf_matrix[1][1] 0.014258 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014258 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.021040 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O S X ZN # loop_