HEADER HYDROLASE 04-FEB-11 2Y8E TITLE CRYSTAL STRUCTURE OF D. MELANOGASTER RAB6 GTPASE BOUND TO GMPPNP COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAB-PROTEIN 6; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 1-177; COMPND 5 SYNONYM: GH09086P, RAB6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET19BTEV KEYWDS HYDROLASE, NUCLEOTIDE BINDING, GTP BINDING EXPDTA X-RAY DIFFRACTION AUTHOR M.WALDEN,T.A.EDWARDS REVDAT 3 20-DEC-23 2Y8E 1 REMARK LINK REVDAT 2 10-AUG-11 2Y8E 1 JRNL REMARK VERSN REVDAT 1 06-JUL-11 2Y8E 0 JRNL AUTH M.WALDEN,H.T.JENKINS,T.A.EDWARDS JRNL TITL STRUCTURE OF THE DROSOPHILA MELANOGASTER RAB6 GTPASE AT 1.4 JRNL TITL 2 A RESOLUTION JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 67 744 2011 JRNL REFN ESSN 1744-3091 JRNL PMID 21795785 JRNL DOI 10.1107/S1744309111017453 REMARK 2 REMARK 2 RESOLUTION. 1.39 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.39 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 63.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 58225 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.146 REMARK 3 R VALUE (WORKING SET) : 0.145 REMARK 3 FREE R VALUE : 0.173 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3121 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.39 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.43 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4196 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.53 REMARK 3 BIN R VALUE (WORKING SET) : 0.2120 REMARK 3 BIN FREE R VALUE SET COUNT : 207 REMARK 3 BIN FREE R VALUE : 0.2550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2682 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 81 REMARK 3 SOLVENT ATOMS : 226 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.33 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.26000 REMARK 3 B22 (A**2) : -0.15000 REMARK 3 B33 (A**2) : -0.50000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.29000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.065 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.056 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.031 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.700 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2853 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1936 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3880 ; 1.561 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4699 ; 0.928 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 346 ; 5.947 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 133 ;33.240 ;23.308 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 517 ;12.006 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;17.056 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 440 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3088 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 605 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1669 ; 1.478 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 683 ; 0.417 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2720 ; 2.440 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1184 ; 3.503 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1152 ; 5.236 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4789 ; 1.346 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY. REMARK 4 REMARK 4 2Y8E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1290046815. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97950 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61395 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.390 REMARK 200 RESOLUTION RANGE LOW (A) : 31.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.39 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.47 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.28000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1YZQ REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.4 M AMMONIUM SULPHATE, 0.1 M REMARK 280 IMIDAZOLE PH 8.0, 2.5% PEG 400, 2.5% DMSO AND 3% TRIMETHYLAMINE REMARK 280 N-OXIDE. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 58.26000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.35500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 58.26000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 21.35500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -59.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B2090 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 THR A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 GLY A 4 REMARK 465 ASP A 5 REMARK 465 PHE A 6 REMARK 465 GLY A 7 REMARK 465 ASN A 8 REMARK 465 PRO A 9 REMARK 465 GLY A 175 REMARK 465 MET A 176 REMARK 465 ASP A 177 REMARK 465 GLY B -1 REMARK 465 THR B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 SER B 3 REMARK 465 GLY B 4 REMARK 465 ASP B 5 REMARK 465 PHE B 6 REMARK 465 PRO B 174 REMARK 465 GLY B 175 REMARK 465 MET B 176 REMARK 465 ASP B 177 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 126 37.66 79.79 REMARK 500 LEU A 129 41.05 -95.23 REMARK 500 LYS B 126 41.15 85.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1177 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 26 OG1 REMARK 620 2 THR A 44 OG1 87.4 REMARK 620 3 GNP A1176 O3G 176.3 89.9 REMARK 620 4 GNP A1176 O1B 88.7 176.0 94.0 REMARK 620 5 HOH A2039 O 85.0 89.4 92.4 91.5 REMARK 620 6 HOH A2120 O 89.7 89.5 92.9 89.3 174.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1177 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 26 OG1 REMARK 620 2 THR B 44 OG1 89.8 REMARK 620 3 GNP B1176 O2B 89.3 177.5 REMARK 620 4 GNP B1176 O1G 177.0 87.4 93.4 REMARK 620 5 HOH B2040 O 85.4 90.2 92.1 93.5 REMARK 620 6 HOH B2105 O 88.0 89.4 88.2 93.1 173.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1175 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1174 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1175 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP A 1176 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1177 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP B 1176 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1177 DBREF 2Y8E A 1 177 UNP O18334 O18334_DROME 1 177 DBREF 2Y8E B 1 177 UNP O18334 O18334_DROME 1 177 SEQADV 2Y8E GLY A -1 UNP O18334 EXPRESSION TAG SEQADV 2Y8E THR A 0 UNP O18334 EXPRESSION TAG SEQADV 2Y8E GLY B -1 UNP O18334 EXPRESSION TAG SEQADV 2Y8E THR B 0 UNP O18334 EXPRESSION TAG SEQRES 1 A 179 GLY THR MET SER SER GLY ASP PHE GLY ASN PRO LEU ARG SEQRES 2 A 179 LYS PHE LYS LEU VAL PHE LEU GLY GLU GLN SER VAL GLY SEQRES 3 A 179 LYS THR SER LEU ILE THR ARG PHE MET TYR ASP SER PHE SEQRES 4 A 179 ASP ASN THR TYR GLN ALA THR ILE GLY ILE ASP PHE LEU SEQRES 5 A 179 SER LYS THR MET TYR LEU GLU ASP ARG THR VAL ARG LEU SEQRES 6 A 179 GLN LEU TRP ASP THR ALA GLY GLN GLU ARG PHE ARG SER SEQRES 7 A 179 LEU ILE PRO SER TYR ILE ARG ASP SER THR VAL ALA VAL SEQRES 8 A 179 VAL VAL TYR ASP ILE THR ASN THR ASN SER PHE HIS GLN SEQRES 9 A 179 THR SER LYS TRP ILE ASP ASP VAL ARG THR GLU ARG GLY SEQRES 10 A 179 SER ASP VAL ILE ILE MET LEU VAL GLY ASN LYS THR ASP SEQRES 11 A 179 LEU SER ASP LYS ARG GLN VAL SER THR GLU GLU GLY GLU SEQRES 12 A 179 ARG LYS ALA LYS GLU LEU ASN VAL MET PHE ILE GLU THR SEQRES 13 A 179 SER ALA LYS ALA GLY TYR ASN VAL LYS GLN LEU PHE ARG SEQRES 14 A 179 ARG VAL ALA ALA ALA LEU PRO GLY MET ASP SEQRES 1 B 179 GLY THR MET SER SER GLY ASP PHE GLY ASN PRO LEU ARG SEQRES 2 B 179 LYS PHE LYS LEU VAL PHE LEU GLY GLU GLN SER VAL GLY SEQRES 3 B 179 LYS THR SER LEU ILE THR ARG PHE MET TYR ASP SER PHE SEQRES 4 B 179 ASP ASN THR TYR GLN ALA THR ILE GLY ILE ASP PHE LEU SEQRES 5 B 179 SER LYS THR MET TYR LEU GLU ASP ARG THR VAL ARG LEU SEQRES 6 B 179 GLN LEU TRP ASP THR ALA GLY GLN GLU ARG PHE ARG SER SEQRES 7 B 179 LEU ILE PRO SER TYR ILE ARG ASP SER THR VAL ALA VAL SEQRES 8 B 179 VAL VAL TYR ASP ILE THR ASN THR ASN SER PHE HIS GLN SEQRES 9 B 179 THR SER LYS TRP ILE ASP ASP VAL ARG THR GLU ARG GLY SEQRES 10 B 179 SER ASP VAL ILE ILE MET LEU VAL GLY ASN LYS THR ASP SEQRES 11 B 179 LEU SER ASP LYS ARG GLN VAL SER THR GLU GLU GLY GLU SEQRES 12 B 179 ARG LYS ALA LYS GLU LEU ASN VAL MET PHE ILE GLU THR SEQRES 13 B 179 SER ALA LYS ALA GLY TYR ASN VAL LYS GLN LEU PHE ARG SEQRES 14 B 179 ARG VAL ALA ALA ALA LEU PRO GLY MET ASP HET SO4 A1175 5 HET GNP A1176 32 HET MG A1177 1 HET SO4 B1174 5 HET SO4 B1175 5 HET GNP B1176 32 HET MG B1177 1 HETNAM SO4 SULFATE ION HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HETNAM MG MAGNESIUM ION FORMUL 3 SO4 3(O4 S 2-) FORMUL 4 GNP 2(C10 H17 N6 O13 P3) FORMUL 5 MG 2(MG 2+) FORMUL 10 HOH *226(H2 O) HELIX 1 1 GLY A 24 ASP A 35 1 12 HELIX 2 2 GLN A 71 LEU A 77 5 7 HELIX 3 3 ILE A 78 ASP A 84 1 7 HELIX 4 4 ASN A 96 GLN A 102 1 7 HELIX 5 5 GLN A 102 GLY A 115 1 14 HELIX 6 6 THR A 127 ARG A 133 5 7 HELIX 7 7 SER A 136 ASN A 148 1 13 HELIX 8 8 ASN A 161 ALA A 172 1 12 HELIX 9 9 GLY B 24 ASP B 35 1 12 HELIX 10 10 GLN B 71 LEU B 77 5 7 HELIX 11 11 ILE B 78 ASP B 84 1 7 HELIX 12 12 ASN B 96 GLN B 102 1 7 HELIX 13 13 GLN B 102 GLY B 115 1 14 HELIX 14 14 THR B 127 ARG B 133 5 7 HELIX 15 15 SER B 136 ASN B 148 1 13 HELIX 16 16 ASN B 161 LEU B 173 1 13 SHEET 1 AA12 MET A 150 THR A 154 0 SHEET 2 AA12 ILE A 119 ASN A 125 1 O ILE A 120 N MET A 150 SHEET 3 AA12 VAL A 87 ASP A 93 1 O ALA A 88 N MET A 121 SHEET 4 AA12 ARG A 11 GLY A 19 1 O LYS A 14 N VAL A 87 SHEET 5 AA12 ARG A 59 THR A 68 1 O THR A 60 N ARG A 11 SHEET 6 AA12 ILE A 47 LEU A 56 -1 O ASP A 48 N ASP A 67 SHEET 7 AA12 ILE B 47 LEU B 56 -1 O PHE B 49 N SER A 51 SHEET 8 AA12 ARG B 59 THR B 68 -1 O ARG B 59 N LEU B 56 SHEET 9 AA12 LYS B 12 GLY B 19 1 O PHE B 13 N GLN B 64 SHEET 10 AA12 VAL B 87 ASP B 93 1 O VAL B 87 N VAL B 16 SHEET 11 AA12 ILE B 119 ASN B 125 1 O ILE B 119 N ALA B 88 SHEET 12 AA12 MET B 150 THR B 154 1 O MET B 150 N LEU B 122 LINK OG1 THR A 26 MG MG A1177 1555 1555 2.09 LINK OG1 THR A 44 MG MG A1177 1555 1555 2.12 LINK O3G GNP A1176 MG MG A1177 1555 1555 1.99 LINK O1B GNP A1176 MG MG A1177 1555 1555 2.07 LINK MG MG A1177 O HOH A2039 1555 1555 2.10 LINK MG MG A1177 O HOH A2120 1555 1555 2.10 LINK OG1 THR B 26 MG MG B1177 1555 1555 2.09 LINK OG1 THR B 44 MG MG B1177 1555 1555 2.11 LINK O2B GNP B1176 MG MG B1177 1555 1555 2.04 LINK O1G GNP B1176 MG MG B1177 1555 1555 1.99 LINK MG MG B1177 O HOH B2040 1555 1555 2.06 LINK MG MG B1177 O HOH B2105 1555 1555 2.10 SITE 1 AC1 6 LYS A 12 LYS A 14 ARG A 114 HOH A2056 SITE 2 AC1 6 HOH A2115 HOH A2116 SITE 1 AC2 8 ARG B 31 SER B 130 ARG B 133 HOH B2014 SITE 2 AC2 8 HOH B2095 HOH B2096 HOH B2097 HOH B2099 SITE 1 AC3 7 TYR B 160 ASN B 161 LYS B 163 ARG B 168 SITE 2 AC3 7 HOH B2087 HOH B2100 HOH B2101 SITE 1 AC4 28 GLN A 21 SER A 22 VAL A 23 GLY A 24 SITE 2 AC4 28 LYS A 25 THR A 26 SER A 27 PHE A 37 SITE 3 AC4 28 ASP A 38 ASN A 39 TYR A 41 THR A 44 SITE 4 AC4 28 GLY A 70 ASN A 125 LYS A 126 ASP A 128 SITE 5 AC4 28 LEU A 129 SER A 155 ALA A 156 LYS A 157 SITE 6 AC4 28 MG A1177 HOH A2025 HOH A2039 HOH A2081 SITE 7 AC4 28 HOH A2117 HOH A2118 HOH A2119 HOH A2120 SITE 1 AC5 5 THR A 26 THR A 44 GNP A1176 HOH A2039 SITE 2 AC5 5 HOH A2120 SITE 1 AC6 29 GLN B 21 SER B 22 VAL B 23 GLY B 24 SITE 2 AC6 29 LYS B 25 THR B 26 SER B 27 PHE B 37 SITE 3 AC6 29 ASP B 38 ASN B 39 TYR B 41 ALA B 43 SITE 4 AC6 29 THR B 44 GLY B 70 ASN B 125 LYS B 126 SITE 5 AC6 29 ASP B 128 LEU B 129 SER B 155 ALA B 156 SITE 6 AC6 29 LYS B 157 MG B1177 HOH B2040 HOH B2064 SITE 7 AC6 29 HOH B2102 HOH B2103 HOH B2104 HOH B2105 SITE 8 AC6 29 HOH B2106 SITE 1 AC7 5 THR B 26 THR B 44 GNP B1176 HOH B2040 SITE 2 AC7 5 HOH B2105 CRYST1 116.520 42.710 86.860 90.00 133.12 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008582 0.000000 0.008037 0.00000 SCALE2 0.000000 0.023414 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015773 0.00000 MTRIX1 1 -0.974270 0.116530 0.192920 -84.32848 1 MTRIX2 1 0.077560 -0.630330 0.772440 -12.78898 1 MTRIX3 1 0.211620 0.767530 0.605070 16.55235 1