HEADER TRANSFERASE 08-FEB-11 2Y8O TITLE CRYSTAL STRUCTURE OF HUMAN P38ALPHA COMPLEXED WITH A MAPK DOCKING TITLE 2 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE 14; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CYTOKINE SUPPRESSIVE ANTI-INFLAMMATORY DRUG-BINDING PROTEIN, COMPND 5 MAP KINASE MXI2, MAX-INTERACTING PROTEIN 2, MITOGEN-ACTIVATED PROTEIN COMPND 6 KINASE P38 ALPHA; COMPND 7 EC: 2.7.11.24; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 6; COMPND 12 CHAIN: B; COMPND 13 FRAGMENT: N-TERMINAL DOCKING PEPTIDE OF MKK6, RESIDUES 4-17; COMPND 14 SYNONYM: MAPK/ERK KINASE 6, SAPKK3; COMPND 15 EC: 2.7.12.2; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: ROSETTA PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET DERIVATIVE; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606 KEYWDS TRANSFERASE, SIGNALLING, MAP KINASE PATHWAY, PROTEIN-PROTEIN KEYWDS 2 INTERACTION EXPDTA X-RAY DIFFRACTION AUTHOR T.BARKAI,A.GARAI,I.TOEROE,A.REMENYI REVDAT 4 20-DEC-23 2Y8O 1 REMARK REVDAT 3 07-MAR-18 2Y8O 1 SOURCE REVDAT 2 24-OCT-12 2Y8O 1 JRNL REVDAT 1 22-FEB-12 2Y8O 0 JRNL AUTH A.GARAI,A.ZEKE,G.GOGL,I.TORO,F.FORDOS,H.BLANKENBURG, JRNL AUTH 2 T.BARKAI,J.VARGA,A.ALEXA,D.EMIG,M.ALBRECHT,A.REMENYI JRNL TITL SPECIFICITY OF LINEAR MOTIFS THAT BIND TO A COMMON JRNL TITL 2 MITOGEN-ACTIVATED PROTEIN KINASE DOCKING GROOVE. JRNL REF SCI. SIGNAL V. 5 74 2012 JRNL REFN ESSN 1937-9145 JRNL PMID 23047924 JRNL DOI 10.1126/SCISIGNAL.2003004 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.38 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 35282 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1766 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.3946 - 4.5838 0.99 2742 133 0.1709 0.1848 REMARK 3 2 4.5838 - 3.6388 1.00 2632 147 0.1409 0.1551 REMARK 3 3 3.6388 - 3.1789 1.00 2590 155 0.1704 0.2267 REMARK 3 4 3.1789 - 2.8883 1.00 2565 138 0.1773 0.2230 REMARK 3 5 2.8883 - 2.6813 1.00 2569 134 0.1747 0.2018 REMARK 3 6 2.6813 - 2.5232 1.00 2596 142 0.1753 0.2518 REMARK 3 7 2.5232 - 2.3969 1.00 2543 129 0.1858 0.2330 REMARK 3 8 2.3969 - 2.2926 1.00 2574 125 0.1811 0.2258 REMARK 3 9 2.2926 - 2.2043 1.00 2520 143 0.1812 0.2251 REMARK 3 10 2.2043 - 2.1282 1.00 2569 134 0.1929 0.2126 REMARK 3 11 2.1282 - 2.0617 1.00 2570 105 0.2150 0.2936 REMARK 3 12 2.0617 - 2.0028 1.00 2537 135 0.2415 0.2662 REMARK 3 13 2.0028 - 1.9500 1.00 2509 146 0.2701 0.2909 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.90 REMARK 3 SHRINKAGE RADIUS : 0.77 REMARK 3 K_SOL : 0.39 REMARK 3 B_SOL : 22.93 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.36 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 12.52440 REMARK 3 B22 (A**2) : 12.52440 REMARK 3 B33 (A**2) : 14.65990 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2885 REMARK 3 ANGLE : 1.145 3921 REMARK 3 CHIRALITY : 0.072 441 REMARK 3 PLANARITY : 0.006 503 REMARK 3 DIHEDRAL : 12.585 1086 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 6:104) REMARK 3 ORIGIN FOR THE GROUP (A): -17.2707 21.4763 -8.6328 REMARK 3 T TENSOR REMARK 3 T11: 0.0432 T22: -0.0349 REMARK 3 T33: 0.0107 T12: -0.0174 REMARK 3 T13: -0.0002 T23: -0.1062 REMARK 3 L TENSOR REMARK 3 L11: -0.0002 L22: 0.0015 REMARK 3 L33: 0.0005 L12: -0.0007 REMARK 3 L13: 0.0016 L23: -0.0017 REMARK 3 S TENSOR REMARK 3 S11: 0.0482 S12: -0.0080 S13: 0.0024 REMARK 3 S21: 0.0175 S22: 0.0348 S23: -0.0330 REMARK 3 S31: 0.0134 S32: -0.0155 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 105:203) REMARK 3 ORIGIN FOR THE GROUP (A): -37.0964 31.4511 -2.1798 REMARK 3 T TENSOR REMARK 3 T11: 0.0185 T22: 0.0440 REMARK 3 T33: 0.0349 T12: 0.0072 REMARK 3 T13: 0.0445 T23: -0.0069 REMARK 3 L TENSOR REMARK 3 L11: 0.0010 L22: 0.0003 REMARK 3 L33: 0.0050 L12: -0.0004 REMARK 3 L13: -0.0030 L23: -0.0013 REMARK 3 S TENSOR REMARK 3 S11: 0.0401 S12: -0.0082 S13: -0.0265 REMARK 3 S21: -0.0086 S22: 0.0334 S23: 0.0040 REMARK 3 S31: -0.0128 S32: 0.0025 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 204:355) REMARK 3 ORIGIN FOR THE GROUP (A): -45.6264 27.9024 -4.8224 REMARK 3 T TENSOR REMARK 3 T11: -0.0723 T22: -0.0656 REMARK 3 T33: -0.0493 T12: 0.0734 REMARK 3 T13: 0.0182 T23: 0.1209 REMARK 3 L TENSOR REMARK 3 L11: -0.0046 L22: 0.0076 REMARK 3 L33: -0.0000 L12: -0.0054 REMARK 3 L13: 0.0021 L23: 0.0034 REMARK 3 S TENSOR REMARK 3 S11: 0.0690 S12: 0.0349 S13: -0.1002 REMARK 3 S21: -0.0725 S22: 0.1041 S23: 0.0094 REMARK 3 S31: 0.0064 S32: -0.0154 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): -27.3962 43.4805 6.7631 REMARK 3 T TENSOR REMARK 3 T11: 0.0843 T22: 0.0770 REMARK 3 T33: 0.0761 T12: 0.0039 REMARK 3 T13: 0.0105 T23: -0.0088 REMARK 3 L TENSOR REMARK 3 L11: 0.0001 L22: 0.0001 REMARK 3 L33: 0.0001 L12: 0.0001 REMARK 3 L13: -0.0001 L23: 0.0001 REMARK 3 S TENSOR REMARK 3 S11: -0.0006 S12: -0.0012 S13: -0.0001 REMARK 3 S21: -0.0007 S22: -0.0005 S23: 0.0005 REMARK 3 S31: -0.0009 S32: 0.0007 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2Y8O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1290047302. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : BENT MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35294 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 70.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.860 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.1800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.80000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.040 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3GC7 REMARK 200 REMARK 200 REMARK: FOUR WEDGES OF DATA WERE COLLECTED FROM A SINGLE CRYSTAL REMARK 200 WITH MICRO-CRYSTAL DIFFRACTOMETER. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG3350 100MM HEPES 7.5, PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.86333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 81.72667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 81.72667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 40.86333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2215 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, CYS 85 TO SER REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLN A 3 REMARK 465 HIS A 174 REMARK 465 THR A 175 REMARK 465 ASP A 176 REMARK 465 ASP A 177 REMARK 465 GLU A 178 REMARK 465 MET A 179 REMARK 465 THR A 180 REMARK 465 GLY A 181 REMARK 465 TYR A 182 REMARK 465 VAL A 183 REMARK 465 ALA A 184 REMARK 465 ASP A 354 REMARK 465 GLN A 355 REMARK 465 GLU A 356 REMARK 465 GLU A 357 REMARK 465 MET A 358 REMARK 465 GLU A 359 REMARK 465 SER A 360 REMARK 465 SER B 4 REMARK 465 LYS B 5 REMARK 465 GLY B 6 REMARK 465 LYS B 7 REMARK 465 LYS B 8 REMARK 465 ARG B 9 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 17 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 37 137.32 -172.84 REMARK 500 ASN A 100 -37.02 -137.03 REMARK 500 ARG A 149 -23.03 86.07 REMARK 500 PHE A 274 50.29 -117.88 REMARK 500 LEU A 289 56.43 -96.97 REMARK 500 ASP A 316 39.46 -140.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1A9U RELATED DB: PDB REMARK 900 THE COMPLEX STRUCTURE OF THE MAP KINASE P38/SB203580 REMARK 900 RELATED ID: 1BL6 RELATED DB: PDB REMARK 900 THE COMPLEX STRUCTURE OF THE MAP KINASE P38/SB216995 REMARK 900 RELATED ID: 1BL7 RELATED DB: PDB REMARK 900 THE COMPLEX STRUCTURE OF THE MAP KINASE P38/SB220025 REMARK 900 RELATED ID: 1BMK RELATED DB: PDB REMARK 900 THE COMPLEX STRUCTURE OF THE MAP KINASE P38/SB218655 REMARK 900 RELATED ID: 1DI9 RELATED DB: PDB REMARK 900 THE STRUCTURE OF P38 MITOGEN-ACTIVATED PROTEIN KINASE INCOMPLEX REMARK 900 WITH 4-[3-METHYLSULFANYLANILINO]-6,7- DIMETHOXYQUINAZOLINE REMARK 900 RELATED ID: 1IAN RELATED DB: PDB REMARK 900 HUMAN P38 MAP KINASE INHIBITOR COMPLEX REMARK 900 RELATED ID: 1KV1 RELATED DB: PDB REMARK 900 P38 MAP KINASE IN COMPLEX WITH INHIBITOR 1 REMARK 900 RELATED ID: 1KV2 RELATED DB: PDB REMARK 900 HUMAN P38 MAP KINASE IN COMPLEX WITH BIRB 796 REMARK 900 RELATED ID: 1M7Q RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF P38 MAP KINASE IN COMPLEX WITH REMARK 900 ADIHYDROQUINAZOLINONE INHIBITOR REMARK 900 RELATED ID: 1OUK RELATED DB: PDB REMARK 900 THE STRUCTURE OF P38 ALPHA IN COMPLEX WITH APYRIDINYLIMIDAZOLE REMARK 900 INHIBITOR REMARK 900 RELATED ID: 1OUY RELATED DB: PDB REMARK 900 THE STRUCTURE OF P38 ALPHA IN COMPLEX WITH A DIHYDROPYRIDO- REMARK 900 PYRIMIDINE INHIBITOR REMARK 900 RELATED ID: 1OVE RELATED DB: PDB REMARK 900 THE STRUCTURE OF P38 ALPHA IN COMPLEX WITH ADIHYDROQUINOLINONE REMARK 900 RELATED ID: 1OZ1 RELATED DB: PDB REMARK 900 P38 MITOGEN-ACTIVATED KINASE IN COMPLEX WITH 4- AZAINDOLEINHIBITOR REMARK 900 RELATED ID: 1R39 RELATED DB: PDB REMARK 900 THE STRUCTURE OF P38ALPHA REMARK 900 RELATED ID: 1R3C RELATED DB: PDB REMARK 900 THE STRUCTURE OF P38ALPHA C162S MUTANT REMARK 900 RELATED ID: 1W7H RELATED DB: PDB REMARK 900 P38 KINASE CRYSTAL STRUCTURE IN COMPLEX WITH SMALL MOLECULE REMARK 900 INHIBITOR REMARK 900 RELATED ID: 1W82 RELATED DB: PDB REMARK 900 P38 KINASE CRYSTAL STRUCTURE IN COMPLEX WITH SMALL MOLECULE REMARK 900 INHIBITOR REMARK 900 RELATED ID: 1W83 RELATED DB: PDB REMARK 900 P38 KINASE CRYSTAL STRUCTURE IN COMPLEX WITH SMALL MOLECULE REMARK 900 INHIBITOR REMARK 900 RELATED ID: 1W84 RELATED DB: PDB REMARK 900 P38 KINASE CRYSTAL STRUCTURE IN COMPLEX WITH SMALL MOLECULE REMARK 900 INHIBITOR REMARK 900 RELATED ID: 1WBN RELATED DB: PDB REMARK 900 FRAGMENT BASED P38 INHIBITORS REMARK 900 RELATED ID: 1WBO RELATED DB: PDB REMARK 900 FRAGMENT BASED P38 INHIBITORS REMARK 900 RELATED ID: 1WBS RELATED DB: PDB REMARK 900 IDENTIFICATION OF NOVEL P38 ALPHA MAP KINASE INHIBITORS USING REMARK 900 FRAGMENT-BASED LEAD GENERATION. REMARK 900 RELATED ID: 1WBT RELATED DB: PDB REMARK 900 IDENTIFICATION OF NOVEL P38 ALPHA MAP KINASE INHIBITORS USING REMARK 900 FRAGMENT-BASED LEAD GENERATION. REMARK 900 RELATED ID: 1WBV RELATED DB: PDB REMARK 900 IDENTIFICATION OF NOVEL P38 ALPHA MAP KINASE INHIBITORS USING REMARK 900 FRAGMENT-BASED LEAD GENERATION. REMARK 900 RELATED ID: 1WBW RELATED DB: PDB REMARK 900 IDENTIFICATION OF NOVEL P38 ALPHA MAP KINASE INHIBITORS USING REMARK 900 FRAGMENT-BASED LEAD GENERATION. REMARK 900 RELATED ID: 1WFC RELATED DB: PDB REMARK 900 STRUCTURE OF APO, UNPHOSPHORYLATED, P38 MITOGEN ACTIVATEDPROTEIN REMARK 900 KINASE P38 (P38 MAP KINASE) THE MAMMALIAN HOMOLOGUEOF THE YEAST REMARK 900 HOG1 PROTEIN REMARK 900 RELATED ID: 1YQJ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF P38 ALPHA IN COMPLEX WITH A REMARK 900 SELECTIVEPYRIDAZINE INHIBITOR REMARK 900 RELATED ID: 1ZYJ RELATED DB: PDB REMARK 900 HUMAN P38 MAP KINASE IN COMPLEX WITH INHIBITOR 1A REMARK 900 RELATED ID: 1ZZ2 RELATED DB: PDB REMARK 900 TWO CLASSES OF P38ALPHA MAP KINASE INHIBITORS HAVING ACOMMON REMARK 900 DIPHENYLETHER CORE BUT EXHIBITING DIVERGENT BINDINGMODES REMARK 900 RELATED ID: 1ZZL RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF P38 WITH TRIAZOLOPYRIDINE REMARK 900 RELATED ID: 2BAJ RELATED DB: PDB REMARK 900 P38ALPHA BOUND TO PYRAZOLOUREA REMARK 900 RELATED ID: 2BAK RELATED DB: PDB REMARK 900 P38ALPHA MAP KINASE BOUND TO MPAQ REMARK 900 RELATED ID: 2BAL RELATED DB: PDB REMARK 900 P38ALPHA MAP KINASE BOUND TO PYRAZOLOAMINE REMARK 900 RELATED ID: 2BAQ RELATED DB: PDB REMARK 900 P38ALPHA BOUND TO RO3201195 REMARK 900 RELATED ID: 2I0H RELATED DB: PDB REMARK 900 THE STRUCTURE OF P38ALPHA IN COMPLEX WITH ANARYLPYRIDAZINONE REMARK 900 RELATED ID: 2YIS RELATED DB: PDB REMARK 900 TRIAZOLOPYRIDINE INHIBITORS OF P38 KINASE. REMARK 900 RELATED ID: 2YIW RELATED DB: PDB REMARK 900 TRIAZOLOPYRIDINE INHIBITORS OF P38 KINASE REMARK 900 RELATED ID: 2YIX RELATED DB: PDB REMARK 900 TRIAZOLOPYRIDINE INHIBITORS OF P38 REMARK 900 RELATED ID: 3ZS5 RELATED DB: PDB REMARK 900 STRUCTURAL BASIS FOR KINASE SELECTIVITY OF THREE CLINICAL P38ALPHA REMARK 900 INHIBITORS REMARK 900 RELATED ID: 3ZSG RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF P38ALPHA BOUND TO TAK-715 REMARK 900 RELATED ID: 3ZSH RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF P38ALPHA BOUND TO SCIO-469 REMARK 900 RELATED ID: 3ZSI RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF P38ALPHA BOUND TO VX-745 REMARK 900 RELATED ID: 3ZYA RELATED DB: PDB REMARK 900 HUMAN P38 MAP KINASE IN COMPLEX WITH 2-AMINO- PHENYLAMINO- REMARK 900 DIBENZOSUBERONE REMARK 900 RELATED ID: 4AA0 RELATED DB: PDB REMARK 900 P38ALPHA MAP KINASE BOUND TO CMPD 2 REMARK 900 RELATED ID: 4AA4 RELATED DB: PDB REMARK 900 P38ALPHA MAP KINASE BOUND TO CMPD 22 REMARK 900 RELATED ID: 4AA5 RELATED DB: PDB REMARK 900 P38ALPHA MAP KINASE BOUND TO CMPD 33 REMARK 900 RELATED ID: 4AAC RELATED DB: PDB REMARK 900 P38ALPHA MAP KINASE BOUND TO CMPD 29 DBREF 2Y8O A 1 360 UNP Q16539 MK14_HUMAN 1 360 DBREF 2Y8O B 4 17 UNP P52564 MP2K6_HUMAN 4 17 SEQADV 2Y8O GLY A -1 UNP Q16539 EXPRESSION TAG SEQADV 2Y8O SER A 0 UNP Q16539 EXPRESSION TAG SEQADV 2Y8O SER A 162 UNP Q16539 CYS 162 ENGINEERED MUTATION SEQRES 1 A 362 GLY SER MET SER GLN GLU ARG PRO THR PHE TYR ARG GLN SEQRES 2 A 362 GLU LEU ASN LYS THR ILE TRP GLU VAL PRO GLU ARG TYR SEQRES 3 A 362 GLN ASN LEU SER PRO VAL GLY SER GLY ALA TYR GLY SER SEQRES 4 A 362 VAL CYS ALA ALA PHE ASP THR LYS THR GLY LEU ARG VAL SEQRES 5 A 362 ALA VAL LYS LYS LEU SER ARG PRO PHE GLN SER ILE ILE SEQRES 6 A 362 HIS ALA LYS ARG THR TYR ARG GLU LEU ARG LEU LEU LYS SEQRES 7 A 362 HIS MET LYS HIS GLU ASN VAL ILE GLY LEU LEU ASP VAL SEQRES 8 A 362 PHE THR PRO ALA ARG SER LEU GLU GLU PHE ASN ASP VAL SEQRES 9 A 362 TYR LEU VAL THR HIS LEU MET GLY ALA ASP LEU ASN ASN SEQRES 10 A 362 ILE VAL LYS CYS GLN LYS LEU THR ASP ASP HIS VAL GLN SEQRES 11 A 362 PHE LEU ILE TYR GLN ILE LEU ARG GLY LEU LYS TYR ILE SEQRES 12 A 362 HIS SER ALA ASP ILE ILE HIS ARG ASP LEU LYS PRO SER SEQRES 13 A 362 ASN LEU ALA VAL ASN GLU ASP SER GLU LEU LYS ILE LEU SEQRES 14 A 362 ASP PHE GLY LEU ALA ARG HIS THR ASP ASP GLU MET THR SEQRES 15 A 362 GLY TYR VAL ALA THR ARG TRP TYR ARG ALA PRO GLU ILE SEQRES 16 A 362 MET LEU ASN TRP MET HIS TYR ASN GLN THR VAL ASP ILE SEQRES 17 A 362 TRP SER VAL GLY CYS ILE MET ALA GLU LEU LEU THR GLY SEQRES 18 A 362 ARG THR LEU PHE PRO GLY THR ASP HIS ILE ASP GLN LEU SEQRES 19 A 362 LYS LEU ILE LEU ARG LEU VAL GLY THR PRO GLY ALA GLU SEQRES 20 A 362 LEU LEU LYS LYS ILE SER SER GLU SER ALA ARG ASN TYR SEQRES 21 A 362 ILE GLN SER LEU THR GLN MET PRO LYS MET ASN PHE ALA SEQRES 22 A 362 ASN VAL PHE ILE GLY ALA ASN PRO LEU ALA VAL ASP LEU SEQRES 23 A 362 LEU GLU LYS MET LEU VAL LEU ASP SER ASP LYS ARG ILE SEQRES 24 A 362 THR ALA ALA GLN ALA LEU ALA HIS ALA TYR PHE ALA GLN SEQRES 25 A 362 TYR HIS ASP PRO ASP ASP GLU PRO VAL ALA ASP PRO TYR SEQRES 26 A 362 ASP GLN SER PHE GLU SER ARG ASP LEU LEU ILE ASP GLU SEQRES 27 A 362 TRP LYS SER LEU THR TYR ASP GLU VAL ILE SER PHE VAL SEQRES 28 A 362 PRO PRO PRO LEU ASP GLN GLU GLU MET GLU SER SEQRES 1 B 14 SER LYS GLY LYS LYS ARG ASN PRO GLY LEU LYS ILE PRO SEQRES 2 B 14 LYS FORMUL 3 HOH *293(H2 O) HELIX 1 1 SER A 61 MET A 78 1 18 HELIX 2 2 SER A 95 PHE A 99 5 5 HELIX 3 3 LEU A 113 GLN A 120 1 8 HELIX 4 4 THR A 123 ALA A 144 1 22 HELIX 5 5 LYS A 152 SER A 154 5 3 HELIX 6 6 ALA A 190 LEU A 195 1 6 HELIX 7 7 GLN A 202 GLY A 219 1 18 HELIX 8 8 ASP A 227 GLY A 240 1 14 HELIX 9 9 GLY A 243 LYS A 248 1 6 HELIX 10 10 SER A 252 LEU A 262 1 11 HELIX 11 11 ASN A 269 PHE A 274 1 6 HELIX 12 12 ASN A 278 LEU A 289 1 12 HELIX 13 13 ASP A 292 ARG A 296 5 5 HELIX 14 14 THR A 298 ALA A 304 1 7 HELIX 15 15 HIS A 305 ALA A 309 5 5 HELIX 16 16 GLN A 325 ARG A 330 5 6 HELIX 17 17 LEU A 333 PHE A 348 1 16 SHEET 1 AA 2 PHE A 8 GLU A 12 0 SHEET 2 AA 2 ILE A 17 PRO A 21 -1 O TRP A 18 N GLN A 11 SHEET 1 AB 5 TYR A 24 SER A 32 0 SHEET 2 AB 5 GLY A 36 ASP A 43 -1 O VAL A 38 N VAL A 30 SHEET 3 AB 5 LEU A 48 LEU A 55 -1 O LEU A 48 N ASP A 43 SHEET 4 AB 5 TYR A 103 HIS A 107 -1 O LEU A 104 N LYS A 53 SHEET 5 AB 5 ASP A 88 PHE A 90 -1 O ASP A 88 N VAL A 105 SHEET 1 AC 3 ALA A 111 ASP A 112 0 SHEET 2 AC 3 LEU A 156 VAL A 158 -1 O VAL A 158 N ALA A 111 SHEET 3 AC 3 LEU A 164 ILE A 166 -1 O LYS A 165 N ALA A 157 CISPEP 1 PRO B 16 LYS B 17 0 -0.82 CRYST1 81.920 81.920 122.590 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012207 0.007048 0.000000 0.00000 SCALE2 0.000000 0.014095 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008157 0.00000