HEADER HYDROLASE 10-FEB-11 2Y8U TITLE A. NIDULANS CHITIN DEACETYLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHITIN DEACETYLASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 19-237; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EMERICELLA NIDULANS (STRAIN FGSC A4 / ATCC SOURCE 3 38163 / CBS 112.46 / NRRL 194 / M139); SOURCE 4 ORGANISM_COMMON: ASPERGILLUS NIDULANS; SOURCE 5 ORGANISM_TAXID: 227321; SOURCE 6 STRAIN: FGSC A4; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR G.PENMAN,L.M.GAY,D.M.F.VAN AALTEN REVDAT 4 08-MAY-24 2Y8U 1 SOURCE REVDAT 3 20-DEC-23 2Y8U 1 REMARK REVDAT 2 11-AUG-21 2Y8U 1 JRNL REMARK LINK REVDAT 1 22-FEB-12 2Y8U 0 JRNL AUTH Z.LIU,L.M.GAY,T.R.TUVENG,J.W.AGGER,B.WESTERENG,G.MATHIESEN, JRNL AUTH 2 S.J.HORN,G.VAAJE-KOLSTAD,D.M.F.VAN AALTEN,V.G.H.EIJSINK JRNL TITL STRUCTURE AND FUNCTION OF A BROAD-SPECIFICITY CHITIN JRNL TITL 2 DEACETYLASE FROM ASPERGILLUS NIDULANS FGSC A4. JRNL REF SCI REP V. 7 1746 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 28496100 JRNL DOI 10.1038/S41598-017-02043-1 REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 84.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 25067 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1334 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.99 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.04 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1839 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.1870 REMARK 3 BIN FREE R VALUE SET COUNT : 84 REMARK 3 BIN FREE R VALUE : 0.2620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3241 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 118 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.05000 REMARK 3 B22 (A**2) : -0.89000 REMARK 3 B33 (A**2) : -1.41000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.64000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.172 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.153 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.104 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.986 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3317 ; 0.024 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4535 ; 1.939 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 421 ; 6.236 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 152 ;31.426 ;24.079 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 500 ;14.319 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;21.560 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 525 ; 0.139 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2552 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2103 ; 1.111 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3383 ; 1.882 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1214 ; 3.380 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1152 ; 5.141 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 27 A 237 REMARK 3 ORIGIN FOR THE GROUP (A): -3.4809 -16.0708 20.6512 REMARK 3 T TENSOR REMARK 3 T11: 0.0076 T22: 0.0417 REMARK 3 T33: 0.0375 T12: 0.0039 REMARK 3 T13: -0.0027 T23: -0.0053 REMARK 3 L TENSOR REMARK 3 L11: 0.4485 L22: 1.3078 REMARK 3 L33: 1.5029 L12: 0.0928 REMARK 3 L13: 0.1288 L23: -0.0054 REMARK 3 S TENSOR REMARK 3 S11: -0.0407 S12: -0.0096 S13: 0.0806 REMARK 3 S21: -0.0560 S22: 0.0059 S23: 0.0507 REMARK 3 S31: -0.0289 S32: -0.0816 S33: 0.0348 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 26 B 237 REMARK 3 ORIGIN FOR THE GROUP (A): -1.9968 -47.1972 25.1596 REMARK 3 T TENSOR REMARK 3 T11: 0.0561 T22: 0.0218 REMARK 3 T33: 0.0206 T12: 0.0058 REMARK 3 T13: 0.0237 T23: -0.0061 REMARK 3 L TENSOR REMARK 3 L11: 0.5961 L22: 1.6173 REMARK 3 L33: 1.0913 L12: 0.0503 REMARK 3 L13: 0.2647 L23: -0.1725 REMARK 3 S TENSOR REMARK 3 S11: -0.0260 S12: 0.0303 S13: -0.0668 REMARK 3 S21: 0.0081 S22: 0.0278 S23: 0.0419 REMARK 3 S31: 0.0681 S32: -0.0577 S33: -0.0018 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2Y8U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1290047332. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-SEP-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26431 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 51.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.32000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2IW0 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M NAH2PO4, 5% HEXANEDIOL, 20% PEG REMARK 280 3350 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 32.26000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 8 REMARK 465 ALA A 9 REMARK 465 HIS A 10 REMARK 465 HIS A 11 REMARK 465 HIS A 12 REMARK 465 HIS A 13 REMARK 465 HIS A 14 REMARK 465 HIS A 15 REMARK 465 HIS A 16 REMARK 465 ARG A 17 REMARK 465 SER A 18 REMARK 465 THR A 19 REMARK 465 PRO A 20 REMARK 465 LEU A 21 REMARK 465 PRO A 22 REMARK 465 LEU A 23 REMARK 465 VAL A 24 REMARK 465 ARG A 25 REMARK 465 ARG A 26 REMARK 465 MET B 8 REMARK 465 ALA B 9 REMARK 465 HIS B 10 REMARK 465 HIS B 11 REMARK 465 HIS B 12 REMARK 465 HIS B 13 REMARK 465 HIS B 14 REMARK 465 HIS B 15 REMARK 465 HIS B 16 REMARK 465 ARG B 17 REMARK 465 SER B 18 REMARK 465 THR B 19 REMARK 465 PRO B 20 REMARK 465 LEU B 21 REMARK 465 PRO B 22 REMARK 465 LEU B 23 REMARK 465 VAL B 24 REMARK 465 ARG B 25 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 52 OE1 OE2 REMARK 470 GLN A 56 CG CD OE1 NE2 REMARK 470 GLU A 140 CD OE1 OE2 REMARK 470 GLU A 143 CG CD OE1 OE2 REMARK 470 GLN A 212 CD OE1 NE2 REMARK 470 ARG B 26 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 31 CG CD OE1 NE2 REMARK 470 GLU B 52 CG CD OE1 OE2 REMARK 470 GLN B 56 CD OE1 NE2 REMARK 470 GLU B 143 CG CD OE1 OE2 REMARK 470 ASN B 215 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NA NA A 1241 NA NA A 1244 1.20 REMARK 500 OH TYR A 200 O HOH A 2048 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 197 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 GLY A 218 C - N - CA ANGL. DEV. = -20.9 DEGREES REMARK 500 ASP B 48 CB - CG - OD1 ANGL. DEV. = 7.2 DEGREES REMARK 500 ARG B 209 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 48 0.63 85.91 REMARK 500 THR A 98 163.19 79.87 REMARK 500 SER A 158 -136.05 -98.82 REMARK 500 SER A 205 -51.25 -137.61 REMARK 500 ASP B 48 -1.59 94.45 REMARK 500 THR B 98 167.49 76.30 REMARK 500 SER B 158 -130.35 -100.04 REMARK 500 THR B 177 -61.56 -105.82 REMARK 500 ASN B 191 7.62 -151.85 REMARK 500 SER B 205 -53.77 -129.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 218 LEU A 219 -149.45 REMARK 500 GLY B 218 LEU B 219 -145.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A1239 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 48 OD1 REMARK 620 2 HIS A 97 NE2 95.9 REMARK 620 3 HIS A 101 NE2 99.5 106.2 REMARK 620 4 PO4 A1238 O1 111.4 102.5 135.0 REMARK 620 5 HOH A2007 O 91.9 169.7 79.1 68.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO B1239 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 48 OD1 REMARK 620 2 HIS B 97 NE2 99.6 REMARK 620 3 HIS B 101 NE2 101.0 105.2 REMARK 620 4 PO4 B1238 O1 111.2 112.2 124.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 1238 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 1239 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1240 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1241 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1242 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1244 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 1238 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO B 1239 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 1240 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS SEQUENCE INCLUDES A PURIFICATION TAG MAHHHHHHHRS DBREF 2Y8U A 19 237 UNP Q5AQQ0 Q5AQQ0_EMENI 19 237 DBREF 2Y8U B 19 237 UNP Q5AQQ0 Q5AQQ0_EMENI 19 237 SEQADV 2Y8U MET A 8 UNP Q5AQQ0 EXPRESSION TAG SEQADV 2Y8U ALA A 9 UNP Q5AQQ0 EXPRESSION TAG SEQADV 2Y8U HIS A 10 UNP Q5AQQ0 EXPRESSION TAG SEQADV 2Y8U HIS A 11 UNP Q5AQQ0 EXPRESSION TAG SEQADV 2Y8U HIS A 12 UNP Q5AQQ0 EXPRESSION TAG SEQADV 2Y8U HIS A 13 UNP Q5AQQ0 EXPRESSION TAG SEQADV 2Y8U HIS A 14 UNP Q5AQQ0 EXPRESSION TAG SEQADV 2Y8U HIS A 15 UNP Q5AQQ0 EXPRESSION TAG SEQADV 2Y8U HIS A 16 UNP Q5AQQ0 EXPRESSION TAG SEQADV 2Y8U ARG A 17 UNP Q5AQQ0 EXPRESSION TAG SEQADV 2Y8U SER A 18 UNP Q5AQQ0 EXPRESSION TAG SEQADV 2Y8U MET B 8 UNP Q5AQQ0 EXPRESSION TAG SEQADV 2Y8U ALA B 9 UNP Q5AQQ0 EXPRESSION TAG SEQADV 2Y8U HIS B 10 UNP Q5AQQ0 EXPRESSION TAG SEQADV 2Y8U HIS B 11 UNP Q5AQQ0 EXPRESSION TAG SEQADV 2Y8U HIS B 12 UNP Q5AQQ0 EXPRESSION TAG SEQADV 2Y8U HIS B 13 UNP Q5AQQ0 EXPRESSION TAG SEQADV 2Y8U HIS B 14 UNP Q5AQQ0 EXPRESSION TAG SEQADV 2Y8U HIS B 15 UNP Q5AQQ0 EXPRESSION TAG SEQADV 2Y8U HIS B 16 UNP Q5AQQ0 EXPRESSION TAG SEQADV 2Y8U ARG B 17 UNP Q5AQQ0 EXPRESSION TAG SEQADV 2Y8U SER B 18 UNP Q5AQQ0 EXPRESSION TAG SEQRES 1 A 230 MET ALA HIS HIS HIS HIS HIS HIS HIS ARG SER THR PRO SEQRES 2 A 230 LEU PRO LEU VAL ARG ARG VAL PRO THR GLY GLN VAL ILE SEQRES 3 A 230 THR GLN CYS THR THR PRO ASN THR ILE ALA LEU THR PHE SEQRES 4 A 230 ASP ASP GLY PRO SER GLU TYR THR PRO GLN LEU LEU ASP SEQRES 5 A 230 LEU LEU SER ARG TYR SER ALA ARG ALA THR PHE PHE VAL SEQRES 6 A 230 LEU GLY ASP ALA ALA ALA GLN ASN PRO GLY LEU LEU GLN SEQRES 7 A 230 ARG MET ARG ASP GLU GLY HIS GLN VAL GLY ALA HIS THR SEQRES 8 A 230 TYR ASP HIS VAL SER LEU PRO SER LEU GLY TYR ASP GLY SEQRES 9 A 230 ILE ALA SER GLN MET THR ARG LEU GLU GLU VAL ILE ARG SEQRES 10 A 230 PRO ALA LEU GLY VAL ALA PRO ALA TYR MET ARG PRO PRO SEQRES 11 A 230 TYR LEU GLU THR ASN GLU LEU VAL LEU GLN VAL MET ARG SEQRES 12 A 230 ASP LEU ASP TYR ARG VAL ILE SER ALA SER VAL ASP THR SEQRES 13 A 230 LYS ASP TYR GLU ASN GLN ASP ALA ASP ALA ILE ILE ASN SEQRES 14 A 230 THR SER PHE GLN LEU PHE LEU ASP GLN LEU ASP ALA GLY SEQRES 15 A 230 GLY ASN ILE VAL LEU ALA HIS ASP ILE HIS TYR TRP THR SEQRES 16 A 230 VAL ALA SER LEU ALA GLU ARG MET LEU GLN GLU VAL ASN SEQRES 17 A 230 ALA ARG GLY LEU ILE ALA THR THR VAL GLY ASP CYS LEU SEQRES 18 A 230 GLY ASP GLY GLU ILE ALA TRP TYR HIS SEQRES 1 B 230 MET ALA HIS HIS HIS HIS HIS HIS HIS ARG SER THR PRO SEQRES 2 B 230 LEU PRO LEU VAL ARG ARG VAL PRO THR GLY GLN VAL ILE SEQRES 3 B 230 THR GLN CYS THR THR PRO ASN THR ILE ALA LEU THR PHE SEQRES 4 B 230 ASP ASP GLY PRO SER GLU TYR THR PRO GLN LEU LEU ASP SEQRES 5 B 230 LEU LEU SER ARG TYR SER ALA ARG ALA THR PHE PHE VAL SEQRES 6 B 230 LEU GLY ASP ALA ALA ALA GLN ASN PRO GLY LEU LEU GLN SEQRES 7 B 230 ARG MET ARG ASP GLU GLY HIS GLN VAL GLY ALA HIS THR SEQRES 8 B 230 TYR ASP HIS VAL SER LEU PRO SER LEU GLY TYR ASP GLY SEQRES 9 B 230 ILE ALA SER GLN MET THR ARG LEU GLU GLU VAL ILE ARG SEQRES 10 B 230 PRO ALA LEU GLY VAL ALA PRO ALA TYR MET ARG PRO PRO SEQRES 11 B 230 TYR LEU GLU THR ASN GLU LEU VAL LEU GLN VAL MET ARG SEQRES 12 B 230 ASP LEU ASP TYR ARG VAL ILE SER ALA SER VAL ASP THR SEQRES 13 B 230 LYS ASP TYR GLU ASN GLN ASP ALA ASP ALA ILE ILE ASN SEQRES 14 B 230 THR SER PHE GLN LEU PHE LEU ASP GLN LEU ASP ALA GLY SEQRES 15 B 230 GLY ASN ILE VAL LEU ALA HIS ASP ILE HIS TYR TRP THR SEQRES 16 B 230 VAL ALA SER LEU ALA GLU ARG MET LEU GLN GLU VAL ASN SEQRES 17 B 230 ALA ARG GLY LEU ILE ALA THR THR VAL GLY ASP CYS LEU SEQRES 18 B 230 GLY ASP GLY GLU ILE ALA TRP TYR HIS HET PO4 A1238 5 HET CO A1239 1 HET NA A1240 1 HET NA A1241 1 HET CL A1242 1 HET NA A1244 1 HET PO4 B1238 5 HET CO B1239 1 HET CL B1240 1 HETNAM PO4 PHOSPHATE ION HETNAM CO COBALT (II) ION HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION FORMUL 3 PO4 2(O4 P 3-) FORMUL 4 CO 2(CO 2+) FORMUL 5 NA 3(NA 1+) FORMUL 7 CL 2(CL 1-) FORMUL 12 HOH *118(H2 O) HELIX 1 1 TYR A 53 TYR A 64 1 12 HELIX 2 2 LEU A 73 ASN A 80 1 8 HELIX 3 3 ASN A 80 GLU A 90 1 11 HELIX 4 4 SER A 103 LEU A 107 5 5 HELIX 5 5 GLY A 108 GLY A 128 1 21 HELIX 6 6 PRO A 136 GLU A 140 5 5 HELIX 7 7 ASN A 142 LEU A 152 1 11 HELIX 8 8 LYS A 164 ASN A 168 5 5 HELIX 9 9 ASP A 172 THR A 177 1 6 HELIX 10 10 THR A 177 ALA A 188 1 12 HELIX 11 11 HIS A 199 SER A 205 1 7 HELIX 12 12 SER A 205 ARG A 217 1 13 HELIX 13 13 THR A 223 LEU A 228 1 6 HELIX 14 14 GLY A 231 ALA A 234 5 4 HELIX 15 15 TYR B 53 TYR B 64 1 12 HELIX 16 16 LEU B 73 ASN B 80 1 8 HELIX 17 17 ASN B 80 GLU B 90 1 11 HELIX 18 18 SER B 103 LEU B 107 5 5 HELIX 19 19 GLY B 108 GLY B 128 1 21 HELIX 20 20 PRO B 136 GLU B 140 5 5 HELIX 21 21 ASN B 142 LEU B 152 1 11 HELIX 22 22 LYS B 164 ASN B 168 5 5 HELIX 23 23 ASP B 172 THR B 177 1 6 HELIX 24 24 THR B 177 ALA B 188 1 12 HELIX 25 25 HIS B 199 SER B 205 1 7 HELIX 26 26 SER B 205 ARG B 217 1 13 HELIX 27 27 THR B 223 LEU B 228 1 6 HELIX 28 28 GLY B 231 ALA B 234 5 4 SHEET 1 AA 3 VAL A 32 ILE A 33 0 SHEET 2 AA 3 ARG A 155 ILE A 157 1 O VAL A 156 N ILE A 33 SHEET 3 AA 3 TYR A 133 MET A 134 1 O MET A 134 N ILE A 157 SHEET 1 AB 5 GLN A 93 ALA A 96 0 SHEET 2 AB 5 THR A 69 VAL A 72 1 O PHE A 70 N GLY A 95 SHEET 3 AB 5 THR A 41 ASP A 47 1 O LEU A 44 N THR A 69 SHEET 4 AB 5 ILE A 192 ALA A 195 1 O VAL A 193 N THR A 45 SHEET 5 AB 5 VAL A 161 ASP A 162 1 O VAL A 161 N LEU A 194 SHEET 1 AC 4 GLN A 93 ALA A 96 0 SHEET 2 AC 4 THR A 69 VAL A 72 1 O PHE A 70 N GLY A 95 SHEET 3 AC 4 THR A 41 ASP A 47 1 O LEU A 44 N THR A 69 SHEET 4 AC 4 ILE A 220 THR A 222 1 O ILE A 220 N ILE A 42 SHEET 1 AD 2 ALA A 130 PRO A 131 0 SHEET 2 AD 2 TYR A 236 HIS A 237 -1 O HIS A 237 N ALA A 130 SHEET 1 BA 3 VAL B 32 ILE B 33 0 SHEET 2 BA 3 ARG B 155 ILE B 157 1 O VAL B 156 N ILE B 33 SHEET 3 BA 3 TYR B 133 MET B 134 1 O MET B 134 N ILE B 157 SHEET 1 BB 5 GLN B 93 ALA B 96 0 SHEET 2 BB 5 THR B 69 VAL B 72 1 O PHE B 70 N GLY B 95 SHEET 3 BB 5 THR B 41 ASP B 47 1 O LEU B 44 N THR B 69 SHEET 4 BB 5 ILE B 192 ALA B 195 1 O VAL B 193 N THR B 45 SHEET 5 BB 5 VAL B 161 ASP B 162 1 O VAL B 161 N LEU B 194 SHEET 1 BC 4 GLN B 93 ALA B 96 0 SHEET 2 BC 4 THR B 69 VAL B 72 1 O PHE B 70 N GLY B 95 SHEET 3 BC 4 THR B 41 ASP B 47 1 O LEU B 44 N THR B 69 SHEET 4 BC 4 ILE B 220 ALA B 221 1 O ILE B 220 N ILE B 42 SHEET 1 BD 2 ALA B 130 PRO B 131 0 SHEET 2 BD 2 TYR B 236 HIS B 237 -1 O HIS B 237 N ALA B 130 LINK OD1 ASP A 48 CO CO A1239 1555 1555 2.03 LINK NE2 HIS A 97 CO CO A1239 1555 1555 2.11 LINK NE2 HIS A 101 CO CO A1239 1555 1555 2.03 LINK O1 PO4 A1238 CO CO A1239 1555 1555 2.02 LINK CO CO A1239 O HOH A2007 1555 1555 2.60 LINK NA NA A1241 O HOH A2003 1555 1555 2.93 LINK OD1 ASP B 48 CO CO B1239 1555 1555 1.87 LINK NE2 HIS B 97 CO CO B1239 1555 1555 2.13 LINK NE2 HIS B 101 CO CO B1239 1555 1555 2.10 LINK O1 PO4 B1238 CO CO B1239 1555 1555 1.66 CISPEP 1 GLY A 49 PRO A 50 0 3.66 CISPEP 2 GLY B 49 PRO B 50 0 2.79 SITE 1 AC1 9 ASP A 47 ASP A 48 HIS A 97 HIS A 101 SITE 2 AC1 9 TYR A 138 HIS A 196 CO A1239 HOH A2007 SITE 3 AC1 9 HOH A2061 SITE 1 AC2 5 ASP A 48 HIS A 97 HIS A 101 PO4 A1238 SITE 2 AC2 5 HOH A2007 SITE 1 AC3 1 GLY A 189 SITE 1 AC4 3 THR A 34 NA A1244 HOH A2003 SITE 1 AC5 1 PHE A 179 SITE 1 AC6 3 THR A 34 PRO A 125 NA A1241 SITE 1 AC7 8 ASP B 47 ASP B 48 HIS B 97 HIS B 101 SITE 2 AC7 8 TYR B 138 HIS B 196 CO B1239 HOH B2057 SITE 1 AC8 4 ASP B 48 HIS B 97 HIS B 101 PO4 B1238 SITE 1 AC9 2 ARG B 118 HOH B2029 CRYST1 35.640 64.520 86.540 90.00 101.16 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028058 0.000000 0.005535 0.00000 SCALE2 0.000000 0.015499 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011778 0.00000