HEADER TRANSFERASE 16-FEB-11 2Y9Q TITLE CRYSTAL STRUCTURE OF HUMAN ERK2 COMPLEXED WITH A MAPK DOCKING PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MAP KINASE 1, MAPK 1, ERT1, EXTRACELLULAR SIGNAL-REGULATED COMPND 5 KINASE 2, ERK-2, MAP KINASE ISOFORM P42, P42-MAPK, MITOGEN-ACTIVATED COMPND 6 PROTEIN KINASE 2, MAP KINASE 2, MAPK 2, ERK2; COMPND 7 EC: 2.7.11.24; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: MAP KINASE-INTERACTING SERINE/THREONINE-PROTEIN KINASE 1; COMPND 11 CHAIN: B; COMPND 12 FRAGMENT: C-TERMINAL DOCKING PEPTIDE, RESIDUES 434-451; COMPND 13 SYNONYM: MAP KINASE SIGNAL-INTEGRATING KINASE 1, MNK1; COMPND 14 EC: 2.7.11.1; COMPND 15 ENGINEERED: YES; COMPND 16 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606 KEYWDS TRANSFERASE, SIGNALING, PROTEIN-PROTEIN INTERACTION EXPDTA X-RAY DIFFRACTION AUTHOR T.BARKAI,A.GARAI,I.TOEROE,A.REMENYI REVDAT 3 20-DEC-23 2Y9Q 1 REMARK REVDAT 2 24-OCT-12 2Y9Q 1 JRNL REVDAT 1 29-FEB-12 2Y9Q 0 JRNL AUTH A.GARAI,A.ZEKE,G.GOGL,I.TORO,F.FORDOS,H.BLANKENBURG, JRNL AUTH 2 T.BARKAI,J.VARGA,A.ALEXA,D.EMIG,M.ALBRECHT,A.REMENYI JRNL TITL SPECIFICITY OF LINEAR MOTIFS THAT BIND TO A COMMON JRNL TITL 2 MITOGEN-ACTIVATED PROTEIN KINASE DOCKING GROOVE. JRNL REF SCI. SIGNAL V. 5 74 2012 JRNL REFN ESSN 1937-9145 JRNL PMID 23047924 JRNL DOI 10.1126/SCISIGNAL.2003004 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 59398 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.177 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.400 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 53.8884 - 3.7353 0.98 4340 151 0.1486 0.1428 REMARK 3 2 3.7353 - 2.9648 1.00 4198 147 0.1393 0.1646 REMARK 3 3 2.9648 - 2.5901 1.00 4214 147 0.1380 0.1576 REMARK 3 4 2.5901 - 2.3533 1.00 4157 144 0.1369 0.1617 REMARK 3 5 2.3533 - 2.1846 1.00 4148 145 0.1361 0.1967 REMARK 3 6 2.1846 - 2.0558 1.00 4153 145 0.1421 0.1631 REMARK 3 7 2.0558 - 1.9528 1.00 4138 143 0.1502 0.1919 REMARK 3 8 1.9528 - 1.8678 1.00 4119 144 0.1571 0.1797 REMARK 3 9 1.8678 - 1.7959 1.00 4112 143 0.1671 0.1913 REMARK 3 10 1.7959 - 1.7339 1.00 4108 143 0.1796 0.2278 REMARK 3 11 1.7339 - 1.6797 1.00 4097 144 0.1978 0.2134 REMARK 3 12 1.6797 - 1.6317 0.99 4107 142 0.2166 0.2666 REMARK 3 13 1.6317 - 1.5887 0.96 3932 137 0.2467 0.2492 REMARK 3 14 1.5887 - 1.5500 0.87 3575 125 0.2841 0.3024 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.65 REMARK 3 K_SOL : 0.38 REMARK 3 B_SOL : 39.59 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.380 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.71 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.37150 REMARK 3 B22 (A**2) : 3.73450 REMARK 3 B33 (A**2) : -2.36300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3174 REMARK 3 ANGLE : 1.327 4325 REMARK 3 CHIRALITY : 0.072 476 REMARK 3 PLANARITY : 0.006 551 REMARK 3 DIHEDRAL : 15.745 1264 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESSEQ 9:61 REMARK 3 ORIGIN FOR THE GROUP (A): 45.3251 38.2414 17.5988 REMARK 3 T TENSOR REMARK 3 T11: 0.1198 T22: 0.1617 REMARK 3 T33: 0.1423 T12: 0.0122 REMARK 3 T13: -0.0190 T23: -0.0421 REMARK 3 L TENSOR REMARK 3 L11: 0.5524 L22: 4.1363 REMARK 3 L33: 1.3496 L12: 0.0871 REMARK 3 L13: -0.4598 L23: -0.2320 REMARK 3 S TENSOR REMARK 3 S11: 0.0329 S12: 0.0327 S13: 0.0869 REMARK 3 S21: -0.2112 S22: -0.0379 S23: 0.3127 REMARK 3 S31: -0.0777 S32: -0.2396 S33: 0.0128 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESSEQ 62:100 REMARK 3 ORIGIN FOR THE GROUP (A): 53.7627 27.0476 21.1669 REMARK 3 T TENSOR REMARK 3 T11: 0.1289 T22: 0.1244 REMARK 3 T33: 0.0819 T12: 0.0108 REMARK 3 T13: -0.0174 T23: -0.0092 REMARK 3 L TENSOR REMARK 3 L11: 2.9952 L22: 1.1251 REMARK 3 L33: 1.9397 L12: 0.4585 REMARK 3 L13: -2.0797 L23: -0.1793 REMARK 3 S TENSOR REMARK 3 S11: -0.0747 S12: -0.1273 S13: -0.0789 REMARK 3 S21: 0.0509 S22: -0.0103 S23: 0.0278 REMARK 3 S31: 0.1465 S32: 0.0601 S33: 0.0841 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND RESSEQ 101:180 REMARK 3 ORIGIN FOR THE GROUP (A): 61.6109 30.4539 6.2188 REMARK 3 T TENSOR REMARK 3 T11: 0.0819 T22: 0.0743 REMARK 3 T33: 0.0903 T12: 0.0011 REMARK 3 T13: -0.0114 T23: -0.0107 REMARK 3 L TENSOR REMARK 3 L11: 1.3840 L22: 0.6629 REMARK 3 L33: 1.6119 L12: -0.0246 REMARK 3 L13: -0.4346 L23: 0.2606 REMARK 3 S TENSOR REMARK 3 S11: 0.0041 S12: -0.0084 S13: 0.0235 REMARK 3 S21: 0.0091 S22: -0.0152 S23: -0.0056 REMARK 3 S31: 0.0035 S32: -0.0090 S33: -0.0180 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND RESSEQ 181:244 REMARK 3 ORIGIN FOR THE GROUP (A): 57.1917 18.0716 -3.1052 REMARK 3 T TENSOR REMARK 3 T11: 0.0952 T22: 0.1027 REMARK 3 T33: 0.1110 T12: 0.0030 REMARK 3 T13: 0.0068 T23: -0.0110 REMARK 3 L TENSOR REMARK 3 L11: 3.0595 L22: 1.7415 REMARK 3 L33: 1.1569 L12: 0.7012 REMARK 3 L13: -0.3243 L23: 0.5735 REMARK 3 S TENSOR REMARK 3 S11: -0.0454 S12: 0.0040 S13: -0.2611 REMARK 3 S21: 0.0424 S22: -0.0044 S23: 0.0701 REMARK 3 S31: 0.1547 S32: -0.0863 S33: 0.0386 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND RESSEQ 245:274 REMARK 3 ORIGIN FOR THE GROUP (A): 61.6369 5.4742 -10.7947 REMARK 3 T TENSOR REMARK 3 T11: 0.2559 T22: 0.2038 REMARK 3 T33: 0.2747 T12: 0.0207 REMARK 3 T13: 0.0422 T23: -0.0489 REMARK 3 L TENSOR REMARK 3 L11: 3.8085 L22: 2.4025 REMARK 3 L33: 1.7886 L12: 2.7558 REMARK 3 L13: -2.3073 L23: -1.4350 REMARK 3 S TENSOR REMARK 3 S11: -0.1542 S12: -0.0219 S13: -0.6567 REMARK 3 S21: 0.0404 S22: -0.0189 S23: -0.3370 REMARK 3 S31: 0.2162 S32: 0.0462 S33: 0.1819 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND RESSEQ 275:293 REMARK 3 ORIGIN FOR THE GROUP (A): 70.2722 26.5331 -12.7964 REMARK 3 T TENSOR REMARK 3 T11: 0.1015 T22: 0.1089 REMARK 3 T33: 0.0986 T12: 0.0090 REMARK 3 T13: 0.0166 T23: -0.0198 REMARK 3 L TENSOR REMARK 3 L11: 5.6583 L22: 4.5265 REMARK 3 L33: 6.5625 L12: -0.4514 REMARK 3 L13: 1.3145 L23: -2.7934 REMARK 3 S TENSOR REMARK 3 S11: 0.0333 S12: 0.4083 S13: 0.0274 REMARK 3 S21: -0.2944 S22: -0.0173 S23: -0.0338 REMARK 3 S31: 0.1220 S32: 0.2436 S33: -0.0327 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN A AND RESSEQ 294:339 REMARK 3 ORIGIN FOR THE GROUP (A): 70.9000 22.1011 7.4598 REMARK 3 T TENSOR REMARK 3 T11: 0.1211 T22: 0.1205 REMARK 3 T33: 0.1317 T12: 0.0249 REMARK 3 T13: -0.0192 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 1.2561 L22: 0.9482 REMARK 3 L33: 0.6766 L12: 0.1555 REMARK 3 L13: -0.6007 L23: 0.2648 REMARK 3 S TENSOR REMARK 3 S11: -0.0313 S12: -0.1105 S13: -0.1115 REMARK 3 S21: 0.1501 S22: -0.0063 S23: -0.0363 REMARK 3 S31: 0.0887 S32: 0.1285 S33: 0.0456 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN A AND RESSEQ 340:358 REMARK 3 ORIGIN FOR THE GROUP (A): 51.5957 24.9367 29.4367 REMARK 3 T TENSOR REMARK 3 T11: 0.1594 T22: 0.1862 REMARK 3 T33: 0.0848 T12: 0.0304 REMARK 3 T13: -0.0085 T23: -0.0217 REMARK 3 L TENSOR REMARK 3 L11: 4.4140 L22: 7.3488 REMARK 3 L33: 3.2832 L12: 2.3948 REMARK 3 L13: 0.8723 L23: 1.6079 REMARK 3 S TENSOR REMARK 3 S11: 0.0746 S12: -0.3515 S13: -0.0501 REMARK 3 S21: 0.6450 S22: 0.0201 S23: -0.2187 REMARK 3 S31: 0.2195 S32: 0.1189 S33: -0.0952 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 71.3047 44.7356 3.7291 REMARK 3 T TENSOR REMARK 3 T11: 0.2487 T22: 0.1088 REMARK 3 T33: 0.2478 T12: -0.0330 REMARK 3 T13: 0.0095 T23: -0.0110 REMARK 3 L TENSOR REMARK 3 L11: 6.7856 L22: 3.7439 REMARK 3 L33: 4.3227 L12: -1.6128 REMARK 3 L13: 3.5852 L23: -0.9541 REMARK 3 S TENSOR REMARK 3 S11: -0.2939 S12: 0.0164 S13: 0.9755 REMARK 3 S21: 0.1472 S22: -0.0640 S23: -0.2454 REMARK 3 S31: -0.4711 S32: 0.0078 S33: 0.3265 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS WERE ADDED IN THE RIDING REMARK 3 POSITIONS FOR REFINEMENT. RESIDUES FROM A-1 TO A8, A359, A360, REMARK 3 AND B454 ARE DISORDERED. RESIDUES A79, A180, AND A314 ARE REMARK 3 MODELLED WITH TRUNCATED SIDECHAINS. REMARK 4 REMARK 4 2Y9Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1290047385. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : DUAL SLITS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59403 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 53.860 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 5.320 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.8200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.65000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.920 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2GPH REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG 20000, 100 MM MIB BUFFER PH REMARK 280 6.5 . REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.68000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.52500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.94000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.52500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.68000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.94000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN B, CYS 440 TO SER REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 ALA A 7 REMARK 465 GLY A 8 REMARK 465 ARG A 359 REMARK 465 SER A 360 REMARK 465 ALA B 451 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 79 CD NE CZ NH1 NH2 REMARK 470 HIS A 180 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 314 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2355 O HOH A 2356 2.08 REMARK 500 OE2 GLU A 322 O HOH A 2477 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 148 -5.63 75.91 REMARK 500 ARG A 148 -5.57 75.94 REMARK 500 ASP A 149 37.06 -143.42 REMARK 500 CYS A 161 4.11 81.31 REMARK 500 ASP A 167 62.60 71.27 REMARK 500 ASP A 318 96.31 -160.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2020 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH A2035 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH A2044 DISTANCE = 6.72 ANGSTROMS REMARK 525 HOH A2086 DISTANCE = 6.39 ANGSTROMS REMARK 525 HOH A2130 DISTANCE = 6.48 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP A 1359 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1TVO RELATED DB: PDB REMARK 900 THE STRUCTURE OF ERK2 IN COMPLEX WITH A SMALL MOLECULE INHIBITOR REMARK 900 RELATED ID: 1PME RELATED DB: PDB REMARK 900 STRUCTURE OF PENTA MUTANT HUMAN ERK2 MAP KINASE COMPLEXED WITH A REMARK 900 SPECIFIC INHIBITOR OF HUMAN P38 MAP KINASE REMARK 900 RELATED ID: 1WZY RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN ERK2 COMPLEXED WITH APYRAZOLOPYRIDAZINE REMARK 900 DERIVATIVE DBREF 2Y9Q A 1 360 UNP P28482 MK01_HUMAN 1 360 DBREF 2Y9Q B 434 451 UNP Q9BUB5 MKNK1_HUMAN 434 451 SEQADV 2Y9Q GLY A -1 UNP P28482 EXPRESSION TAG SEQADV 2Y9Q SER A 0 UNP P28482 EXPRESSION TAG SEQADV 2Y9Q SER B 440 UNP Q9BUB5 CYS 440 ENGINEERED MUTATION SEQRES 1 A 362 GLY SER MET ALA ALA ALA ALA ALA ALA GLY ALA GLY PRO SEQRES 2 A 362 GLU MET VAL ARG GLY GLN VAL PHE ASP VAL GLY PRO ARG SEQRES 3 A 362 TYR THR ASN LEU SER TYR ILE GLY GLU GLY ALA TYR GLY SEQRES 4 A 362 MET VAL CYS SER ALA TYR ASP ASN VAL ASN LYS VAL ARG SEQRES 5 A 362 VAL ALA ILE LYS LYS ILE SER PRO PHE GLU HIS GLN THR SEQRES 6 A 362 TYR CYS GLN ARG THR LEU ARG GLU ILE LYS ILE LEU LEU SEQRES 7 A 362 ARG PHE ARG HIS GLU ASN ILE ILE GLY ILE ASN ASP ILE SEQRES 8 A 362 ILE ARG ALA PRO THR ILE GLU GLN MET LYS ASP VAL TYR SEQRES 9 A 362 ILE VAL GLN ASP LEU MET GLU THR ASP LEU TYR LYS LEU SEQRES 10 A 362 LEU LYS THR GLN HIS LEU SER ASN ASP HIS ILE CYS TYR SEQRES 11 A 362 PHE LEU TYR GLN ILE LEU ARG GLY LEU LYS TYR ILE HIS SEQRES 12 A 362 SER ALA ASN VAL LEU HIS ARG ASP LEU LYS PRO SER ASN SEQRES 13 A 362 LEU LEU LEU ASN THR THR CYS ASP LEU LYS ILE CYS ASP SEQRES 14 A 362 PHE GLY LEU ALA ARG VAL ALA ASP PRO ASP HIS ASP HIS SEQRES 15 A 362 THR GLY PHE LEU THR GLU TYR VAL ALA THR ARG TRP TYR SEQRES 16 A 362 ARG ALA PRO GLU ILE MET LEU ASN SER LYS GLY TYR THR SEQRES 17 A 362 LYS SER ILE ASP ILE TRP SER VAL GLY CYS ILE LEU ALA SEQRES 18 A 362 GLU MET LEU SER ASN ARG PRO ILE PHE PRO GLY LYS HIS SEQRES 19 A 362 TYR LEU ASP GLN LEU ASN HIS ILE LEU GLY ILE LEU GLY SEQRES 20 A 362 SER PRO SER GLN GLU ASP LEU ASN CYS ILE ILE ASN LEU SEQRES 21 A 362 LYS ALA ARG ASN TYR LEU LEU SER LEU PRO HIS LYS ASN SEQRES 22 A 362 LYS VAL PRO TRP ASN ARG LEU PHE PRO ASN ALA ASP SER SEQRES 23 A 362 LYS ALA LEU ASP LEU LEU ASP LYS MET LEU THR PHE ASN SEQRES 24 A 362 PRO HIS LYS ARG ILE GLU VAL GLU GLN ALA LEU ALA HIS SEQRES 25 A 362 PRO TYR LEU GLU GLN TYR TYR ASP PRO SER ASP GLU PRO SEQRES 26 A 362 ILE ALA GLU ALA PRO PHE LYS PHE ASP MET GLU LEU ASP SEQRES 27 A 362 ASP LEU PRO LYS GLU LYS LEU LYS GLU LEU ILE PHE GLU SEQRES 28 A 362 GLU THR ALA ARG PHE GLN PRO GLY TYR ARG SER SEQRES 1 B 18 MET LYS LEU SER PRO PRO SER LYS SER ARG LEU ALA ARG SEQRES 2 B 18 ARG ARG ALA LEU ALA HET ANP A1359 31 HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER FORMUL 3 ANP C10 H17 N6 O12 P3 FORMUL 4 HOH *546(H2 O) HELIX 1 1 HIS A 61 PHE A 78 1 18 HELIX 2 2 LEU A 112 GLN A 119 1 8 HELIX 3 3 SER A 122 ALA A 143 1 22 HELIX 4 4 LYS A 151 SER A 153 5 3 HELIX 5 5 ALA A 195 ASN A 201 1 7 HELIX 6 6 LYS A 207 ASN A 224 1 18 HELIX 7 7 HIS A 232 GLY A 245 1 14 HELIX 8 8 SER A 248 ASN A 253 1 6 HELIX 9 9 ASN A 257 LEU A 267 1 11 HELIX 10 10 PRO A 274 PHE A 279 1 6 HELIX 11 11 ASP A 283 LEU A 294 1 12 HELIX 12 12 ASN A 297 ARG A 301 5 5 HELIX 13 13 GLU A 303 ALA A 309 1 7 HELIX 14 14 HIS A 310 GLU A 314 5 5 HELIX 15 15 ASP A 318 GLU A 322 5 5 HELIX 16 16 PRO A 339 ALA A 352 1 14 HELIX 17 17 ARG A 353 GLN A 355 5 3 HELIX 18 18 PRO B 438 LYS B 441 5 4 HELIX 19 19 SER B 442 LEU B 450 1 9 SHEET 1 AA 2 MET A 13 VAL A 14 0 SHEET 2 AA 2 GLN A 17 VAL A 18 -1 O GLN A 17 N VAL A 14 SHEET 1 AB 5 TYR A 25 GLU A 33 0 SHEET 2 AB 5 MET A 38 ASP A 44 -1 O VAL A 39 N ILE A 31 SHEET 3 AB 5 VAL A 49 ILE A 56 -1 O VAL A 49 N ASP A 44 SHEET 4 AB 5 VAL A 101 ASP A 106 -1 O VAL A 101 N ILE A 56 SHEET 5 AB 5 ASP A 88 ILE A 90 -1 O ASP A 88 N VAL A 104 SHEET 1 AC 3 THR A 110 ASP A 111 0 SHEET 2 AC 3 LEU A 155 LEU A 157 -1 O LEU A 157 N THR A 110 SHEET 3 AC 3 LEU A 163 ILE A 165 -1 O LYS A 164 N LEU A 156 SHEET 1 AD 2 VAL A 145 LEU A 146 0 SHEET 2 AD 2 ARG A 172 VAL A 173 -1 O ARG A 172 N LEU A 146 CISPEP 1 GLY A 22 PRO A 23 0 2.44 SITE 1 AC1 26 GLY A 34 ALA A 35 TYR A 36 GLY A 37 SITE 2 AC1 26 VAL A 39 ALA A 52 LYS A 54 ARG A 67 SITE 3 AC1 26 GLN A 105 ASP A 106 MET A 108 ASP A 111 SITE 4 AC1 26 LYS A 114 LYS A 151 SER A 153 LEU A 156 SITE 5 AC1 26 ASP A 167 HOH A2237 HOH A2238 HOH A2295 SITE 6 AC1 26 HOH A2297 HOH A2523 HOH A2524 HOH A2525 SITE 7 AC1 26 HOH A2526 HOH A2527 CRYST1 65.360 65.880 95.050 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015300 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015179 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010521 0.00000