HEADER TRANSFERASE 18-FEB-11 2YAA TITLE CRYSTAL STRUCTURE OF THE AUTOINHIBITED FORM OF MOUSE DAPK2 IN COMPLEX TITLE 2 WITH ATP COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEATH-ASSOCIATED PROTEIN KINASE 2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 11-370; COMPND 5 SYNONYM: DAP KINASE 2, DAP-KINASE-RELATED PROTEIN 1, DRP-1; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PLYSS RARE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PTH27 KEYWDS TRANSFERASE, APOPTOSIS EXPDTA X-RAY DIFFRACTION AUTHOR A.K.PATEL,P.KURSULA REVDAT 4 20-DEC-23 2YAA 1 REMARK LINK REVDAT 3 17-JUL-19 2YAA 1 REMARK REVDAT 2 01-JUN-11 2YAA 1 JRNL REVDAT 1 13-APR-11 2YAA 0 JRNL AUTH A.K.PATEL,R.P.YADAV,V.MAJAVA,I.KURSULA,P.KURSULA JRNL TITL STRUCTURE OF THE DIMERIC AUTOINHIBITED CONFORMATION OF JRNL TITL 2 DAPK2, A PRO-APOPTOTIC PROTEIN KINASE. JRNL REF J.MOL.BIOL. V. 409 369 2011 JRNL REFN ISSN 0022-2836 JRNL PMID 21497605 JRNL DOI 10.1016/J.JMB.2011.03.065 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 30065 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1496 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.8570 - 4.9483 0.98 3049 162 0.1995 0.2061 REMARK 3 2 4.9483 - 3.9304 0.95 2833 149 0.1809 0.2073 REMARK 3 3 3.9304 - 3.4344 0.92 2710 133 0.2221 0.2571 REMARK 3 4 3.4344 - 3.1208 0.98 2850 150 0.2283 0.3148 REMARK 3 5 3.1208 - 2.8973 0.99 2868 150 0.2288 0.3265 REMARK 3 6 2.8973 - 2.7266 0.99 2858 152 0.2345 0.3009 REMARK 3 7 2.7266 - 2.5901 0.99 2870 150 0.2274 0.3626 REMARK 3 8 2.5901 - 2.4774 0.99 2838 155 0.2355 0.3122 REMARK 3 9 2.4774 - 2.3821 0.99 2859 147 0.2315 0.3607 REMARK 3 10 2.3821 - 2.2999 0.98 2834 148 0.2366 0.3119 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.72 REMARK 3 K_SOL : 0.31 REMARK 3 B_SOL : 20.00 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.21 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.49010 REMARK 3 B22 (A**2) : 18.51350 REMARK 3 B33 (A**2) : 2.78730 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 5063 REMARK 3 ANGLE : 0.767 6852 REMARK 3 CHIRALITY : 0.049 766 REMARK 3 PLANARITY : 0.002 871 REMARK 3 DIHEDRAL : 16.653 1920 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESSEQ 2:45 REMARK 3 ORIGIN FOR THE GROUP (A): -13.2664 -15.4929 -32.2325 REMARK 3 T TENSOR REMARK 3 T11: 0.1308 T22: 0.0603 REMARK 3 T33: 0.1502 T12: 0.0639 REMARK 3 T13: 0.0130 T23: 0.0094 REMARK 3 L TENSOR REMARK 3 L11: 0.0260 L22: 0.0459 REMARK 3 L33: 0.0472 L12: 0.0036 REMARK 3 L13: -0.0217 L23: -0.0340 REMARK 3 S TENSOR REMARK 3 S11: -0.0393 S12: 0.0178 S13: -0.0091 REMARK 3 S21: -0.0527 S22: -0.0362 S23: 0.0261 REMARK 3 S31: 0.0208 S32: -0.0058 S33: -0.0541 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESSEQ 46:84 REMARK 3 ORIGIN FOR THE GROUP (A): -13.6578 -2.9090 -36.1821 REMARK 3 T TENSOR REMARK 3 T11: 0.1587 T22: 0.1950 REMARK 3 T33: 0.2146 T12: 0.0319 REMARK 3 T13: -0.0143 T23: -0.0138 REMARK 3 L TENSOR REMARK 3 L11: 0.0077 L22: 0.1399 REMARK 3 L33: 0.0212 L12: -0.0117 REMARK 3 L13: -0.0160 L23: 0.0141 REMARK 3 S TENSOR REMARK 3 S11: 0.0909 S12: 0.0537 S13: 0.0622 REMARK 3 S21: -0.1728 S22: 0.0081 S23: 0.0143 REMARK 3 S31: -0.0978 S32: -0.0071 S33: 0.0045 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND RESSEQ 85:174 REMARK 3 ORIGIN FOR THE GROUP (A): -22.1714 -0.4156 -22.0651 REMARK 3 T TENSOR REMARK 3 T11: 0.0340 T22: 0.0544 REMARK 3 T33: 0.0486 T12: -0.0099 REMARK 3 T13: 0.0022 T23: 0.0076 REMARK 3 L TENSOR REMARK 3 L11: 0.0628 L22: 0.0428 REMARK 3 L33: 0.0673 L12: -0.0040 REMARK 3 L13: -0.0390 L23: 0.0086 REMARK 3 S TENSOR REMARK 3 S11: -0.0048 S12: 0.0035 S13: 0.0086 REMARK 3 S21: -0.0306 S22: 0.0130 S23: 0.0708 REMARK 3 S31: 0.0355 S32: 0.0647 S33: 0.0067 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND RESSEQ 175:301 REMARK 3 ORIGIN FOR THE GROUP (A): -34.1596 10.8409 -20.5821 REMARK 3 T TENSOR REMARK 3 T11: 0.0372 T22: 0.0771 REMARK 3 T33: 0.0468 T12: -0.0237 REMARK 3 T13: 0.0365 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.1118 L22: 0.0453 REMARK 3 L33: 0.0328 L12: 0.0390 REMARK 3 L13: 0.0419 L23: 0.0004 REMARK 3 S TENSOR REMARK 3 S11: 0.0152 S12: -0.0671 S13: 0.0936 REMARK 3 S21: 0.0397 S22: -0.0167 S23: 0.0360 REMARK 3 S31: -0.0358 S32: -0.0771 S33: -0.0765 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN B AND RESSEQ 3:32 REMARK 3 ORIGIN FOR THE GROUP (A): -48.9616 -16.5292 -49.9073 REMARK 3 T TENSOR REMARK 3 T11: 0.1761 T22: 0.1640 REMARK 3 T33: 0.2004 T12: -0.0359 REMARK 3 T13: 0.0089 T23: -0.0319 REMARK 3 L TENSOR REMARK 3 L11: 0.0055 L22: 0.0114 REMARK 3 L33: 0.0273 L12: 0.0029 REMARK 3 L13: -0.0110 L23: -0.0161 REMARK 3 S TENSOR REMARK 3 S11: 0.0434 S12: -0.0353 S13: 0.0440 REMARK 3 S21: 0.0849 S22: 0.0894 S23: -0.0372 REMARK 3 S31: -0.0317 S32: -0.0648 S33: 0.0041 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN B AND RESSEQ 33:70 REMARK 3 ORIGIN FOR THE GROUP (A): -48.8091 -6.2748 -45.4632 REMARK 3 T TENSOR REMARK 3 T11: 0.1507 T22: 0.1212 REMARK 3 T33: 0.0652 T12: -0.0418 REMARK 3 T13: -0.0336 T23: -0.0205 REMARK 3 L TENSOR REMARK 3 L11: 0.0400 L22: 0.0284 REMARK 3 L33: 0.0041 L12: -0.0263 REMARK 3 L13: -0.0101 L23: 0.0001 REMARK 3 S TENSOR REMARK 3 S11: 0.0438 S12: -0.1100 S13: 0.0086 REMARK 3 S21: 0.1025 S22: 0.0800 S23: -0.0594 REMARK 3 S31: 0.0025 S32: -0.0333 S33: 0.0138 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN B AND RESSEQ 71:133 REMARK 3 ORIGIN FOR THE GROUP (A): -42.5670 -3.3761 -62.0642 REMARK 3 T TENSOR REMARK 3 T11: 0.1057 T22: 0.1315 REMARK 3 T33: 0.0869 T12: -0.0019 REMARK 3 T13: 0.0255 T23: 0.0244 REMARK 3 L TENSOR REMARK 3 L11: 0.0725 L22: 0.0811 REMARK 3 L33: 0.0422 L12: 0.0775 REMARK 3 L13: 0.0550 L23: 0.0624 REMARK 3 S TENSOR REMARK 3 S11: -0.0011 S12: 0.0792 S13: -0.0792 REMARK 3 S21: -0.0449 S22: 0.0646 S23: -0.0613 REMARK 3 S31: 0.0059 S32: 0.0308 S33: 0.0304 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN B AND RESSEQ 134:183 REMARK 3 ORIGIN FOR THE GROUP (A): -40.8141 2.3795 -56.4901 REMARK 3 T TENSOR REMARK 3 T11: 0.0333 T22: 0.0350 REMARK 3 T33: -0.0953 T12: 0.0393 REMARK 3 T13: -0.0537 T23: -0.0766 REMARK 3 L TENSOR REMARK 3 L11: 0.1471 L22: 0.0106 REMARK 3 L33: 0.0671 L12: -0.0279 REMARK 3 L13: 0.0323 L23: -0.0176 REMARK 3 S TENSOR REMARK 3 S11: -0.0263 S12: -0.0890 S13: 0.0531 REMARK 3 S21: 0.0244 S22: 0.0127 S23: -0.0046 REMARK 3 S31: -0.0400 S32: -0.0168 S33: -0.0936 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN B AND RESSEQ 184:301 REMARK 3 ORIGIN FOR THE GROUP (A): -28.7444 10.9742 -63.5755 REMARK 3 T TENSOR REMARK 3 T11: -0.0447 T22: 0.1567 REMARK 3 T33: 0.0125 T12: -0.0220 REMARK 3 T13: 0.1020 T23: 0.0327 REMARK 3 L TENSOR REMARK 3 L11: 0.4135 L22: 0.0884 REMARK 3 L33: 0.1350 L12: -0.1076 REMARK 3 L13: 0.1691 L23: -0.0515 REMARK 3 S TENSOR REMARK 3 S11: 0.0146 S12: 0.3232 S13: 0.0470 REMARK 3 S21: -0.0489 S22: -0.0154 S23: -0.1157 REMARK 3 S31: -0.0793 S32: 0.1726 S33: -0.0417 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN A AND RESID 1302 REMARK 3 ORIGIN FOR THE GROUP (A): -23.0882 -7.2364 -30.5841 REMARK 3 T TENSOR REMARK 3 T11: 0.2261 T22: 0.2605 REMARK 3 T33: 0.2857 T12: 0.1376 REMARK 3 T13: -0.1179 T23: -0.0418 REMARK 3 L TENSOR REMARK 3 L11: 0.0049 L22: 0.0143 REMARK 3 L33: 0.0314 L12: -0.0087 REMARK 3 L13: 0.0126 L23: -0.0212 REMARK 3 S TENSOR REMARK 3 S11: -0.0058 S12: 0.0239 S13: 0.0142 REMARK 3 S21: -0.0205 S22: 0.0004 S23: 0.0266 REMARK 3 S31: 0.0041 S32: -0.0125 S33: -0.0040 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN B AND RESID 1302 REMARK 3 ORIGIN FOR THE GROUP (A): -39.3755 -8.4332 -53.2791 REMARK 3 T TENSOR REMARK 3 T11: 0.1416 T22: 0.2401 REMARK 3 T33: 0.0960 T12: -0.0035 REMARK 3 T13: -0.1106 T23: -0.0073 REMARK 3 L TENSOR REMARK 3 L11: 0.0124 L22: 0.0441 REMARK 3 L33: 0.0957 L12: 0.0139 REMARK 3 L13: 0.0253 L23: 0.0639 REMARK 3 S TENSOR REMARK 3 S11: 0.0009 S12: -0.0152 S13: 0.0009 REMARK 3 S21: 0.0174 S22: -0.0045 S23: -0.0150 REMARK 3 S31: -0.0090 S32: 0.0020 S33: 0.0005 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE C-TERMINAL 59 RESIDUES ARE NOT REMARK 3 VISIBLE IN ELECTRON DENSITY, MOST LIKELY THE C-TERMINAL TAIL HAS REMARK 3 DEGRADED DURING CRYSTALLIZATION. REMARK 4 REMARK 4 2YAA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1290047432. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X12 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30082 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.48000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2A2A REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.55000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.21000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.01000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.21000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.55000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.01000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 ARG A 302 REMARK 465 ARG A 303 REMARK 465 ARG A 304 REMARK 465 TRP A 305 REMARK 465 LYS A 306 REMARK 465 LEU A 307 REMARK 465 SER A 308 REMARK 465 PHE A 309 REMARK 465 SER A 310 REMARK 465 ILE A 311 REMARK 465 VAL A 312 REMARK 465 SER A 313 REMARK 465 LEU A 314 REMARK 465 CYS A 315 REMARK 465 ASN A 316 REMARK 465 HIS A 317 REMARK 465 LEU A 318 REMARK 465 THR A 319 REMARK 465 ARG A 320 REMARK 465 SER A 321 REMARK 465 LEU A 322 REMARK 465 MET A 323 REMARK 465 LYS A 324 REMARK 465 LYS A 325 REMARK 465 VAL A 326 REMARK 465 HIS A 327 REMARK 465 LEU A 328 REMARK 465 ARG A 329 REMARK 465 THR A 330 REMARK 465 SER A 331 REMARK 465 GLU A 332 REMARK 465 ASP A 333 REMARK 465 LEU A 334 REMARK 465 ARG A 335 REMARK 465 ASN A 336 REMARK 465 CYS A 337 REMARK 465 GLU A 338 REMARK 465 SER A 339 REMARK 465 ASP A 340 REMARK 465 THR A 341 REMARK 465 GLU A 342 REMARK 465 GLU A 343 REMARK 465 ASN A 344 REMARK 465 ILE A 345 REMARK 465 ALA A 346 REMARK 465 ARG A 347 REMARK 465 ARG A 348 REMARK 465 LYS A 349 REMARK 465 ALA A 350 REMARK 465 LEU A 351 REMARK 465 HIS A 352 REMARK 465 PRO A 353 REMARK 465 ARG A 354 REMARK 465 ARG A 355 REMARK 465 ARG A 356 REMARK 465 SER A 357 REMARK 465 SER A 358 REMARK 465 THR A 359 REMARK 465 SER A 360 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 ARG B 302 REMARK 465 ARG B 303 REMARK 465 ARG B 304 REMARK 465 TRP B 305 REMARK 465 LYS B 306 REMARK 465 LEU B 307 REMARK 465 SER B 308 REMARK 465 PHE B 309 REMARK 465 SER B 310 REMARK 465 ILE B 311 REMARK 465 VAL B 312 REMARK 465 SER B 313 REMARK 465 LEU B 314 REMARK 465 CYS B 315 REMARK 465 ASN B 316 REMARK 465 HIS B 317 REMARK 465 LEU B 318 REMARK 465 THR B 319 REMARK 465 ARG B 320 REMARK 465 SER B 321 REMARK 465 LEU B 322 REMARK 465 MET B 323 REMARK 465 LYS B 324 REMARK 465 LYS B 325 REMARK 465 VAL B 326 REMARK 465 HIS B 327 REMARK 465 LEU B 328 REMARK 465 ARG B 329 REMARK 465 THR B 330 REMARK 465 SER B 331 REMARK 465 GLU B 332 REMARK 465 ASP B 333 REMARK 465 LEU B 334 REMARK 465 ARG B 335 REMARK 465 ASN B 336 REMARK 465 CYS B 337 REMARK 465 GLU B 338 REMARK 465 SER B 339 REMARK 465 ASP B 340 REMARK 465 THR B 341 REMARK 465 GLU B 342 REMARK 465 GLU B 343 REMARK 465 ASN B 344 REMARK 465 ILE B 345 REMARK 465 ALA B 346 REMARK 465 ARG B 347 REMARK 465 ARG B 348 REMARK 465 LYS B 349 REMARK 465 ALA B 350 REMARK 465 LEU B 351 REMARK 465 HIS B 352 REMARK 465 PRO B 353 REMARK 465 ARG B 354 REMARK 465 ARG B 355 REMARK 465 ARG B 356 REMARK 465 SER B 357 REMARK 465 SER B 358 REMARK 465 THR B 359 REMARK 465 SER B 360 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 3 -17.02 -146.45 REMARK 500 ALA A 51 33.81 -96.50 REMARK 500 ASN A 85 -155.13 -114.03 REMARK 500 LEU A 111 115.22 -167.39 REMARK 500 ASP A 139 35.41 -140.37 REMARK 500 ASP A 161 82.55 61.63 REMARK 500 TYR A 300 47.42 -107.70 REMARK 500 ASP B 139 36.72 -145.43 REMARK 500 LYS B 150 -36.55 74.10 REMARK 500 ASN B 151 41.93 -98.58 REMARK 500 ASP B 161 88.67 66.98 REMARK 500 PHE B 236 73.53 -109.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1304 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 190 O REMARK 620 2 HOH A2103 O 94.3 REMARK 620 3 HOH A2106 O 68.2 155.7 REMARK 620 4 HOH A2109 O 99.2 93.0 105.9 REMARK 620 5 ASN B 190 O 87.9 72.0 90.1 163.9 REMARK 620 6 HOH B2107 O 161.0 104.2 95.2 75.9 101.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 1302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP B 1302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2YAB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE AUTOINHIBITED FORM OF MOUSE DAPK2 IN REMARK 900 COMPLEX WITH AMP REMARK 900 RELATED ID: 2YA9 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE AUTOINHIBITED FORM OF MOUSE DAPK2 DBREF 2YAA A 1 360 UNP Q8VDF3 DAPK2_MOUSE 11 370 DBREF 2YAA B 1 360 UNP Q8VDF3 DAPK2_MOUSE 11 370 SEQADV 2YAA GLY A 0 UNP Q8VDF3 EXPRESSION TAG SEQADV 2YAA GLY B 0 UNP Q8VDF3 EXPRESSION TAG SEQRES 1 A 361 GLY MET GLU THR PHE LYS GLN GLN LYS VAL GLU ASP PHE SEQRES 2 A 361 TYR ASP ILE GLY GLU GLU LEU GLY SER GLY GLN PHE ALA SEQRES 3 A 361 ILE VAL LYS LYS CYS ARG GLU LYS SER THR GLY LEU GLU SEQRES 4 A 361 TYR ALA ALA LYS PHE ILE LYS LYS ARG GLN SER ARG ALA SEQRES 5 A 361 SER ARG ARG GLY VAL CYS ARG GLU GLU ILE GLU ARG GLU SEQRES 6 A 361 VAL SER ILE LEU ARG GLN VAL LEU HIS PRO ASN ILE ILE SEQRES 7 A 361 THR LEU HIS ASP VAL TYR GLU ASN ARG THR ASP VAL VAL SEQRES 8 A 361 LEU ILE LEU GLU LEU VAL SER GLY GLY GLU LEU PHE ASP SEQRES 9 A 361 PHE LEU ALA GLN LYS GLU SER LEU SER GLU GLU GLU ALA SEQRES 10 A 361 THR SER PHE ILE LYS GLN ILE LEU ASP GLY VAL ASN TYR SEQRES 11 A 361 LEU HIS THR LYS LYS ILE ALA HIS PHE ASP LEU LYS PRO SEQRES 12 A 361 GLU ASN ILE MET LEU LEU ASP LYS ASN ILE PRO ILE PRO SEQRES 13 A 361 HIS ILE LYS LEU ILE ASP PHE GLY LEU ALA HIS GLU ILE SEQRES 14 A 361 GLU ASP GLY VAL GLU PHE LYS ASN ILE PHE GLY THR PRO SEQRES 15 A 361 GLU PHE VAL ALA PRO GLU ILE VAL ASN TYR GLU PRO LEU SEQRES 16 A 361 GLY LEU GLU ALA ASP MET TRP SER ILE GLY VAL ILE THR SEQRES 17 A 361 TYR ILE LEU LEU SER GLY ALA SER PRO PHE LEU GLY ASP SEQRES 18 A 361 THR LYS GLN GLU THR LEU ALA ASN ILE THR ALA VAL SER SEQRES 19 A 361 TYR ASP PHE ASP GLU GLU PHE PHE SER GLN THR SER GLU SEQRES 20 A 361 LEU ALA LYS ASP PHE ILE ARG LYS LEU LEU VAL LYS GLU SEQRES 21 A 361 THR ARG LYS ARG LEU THR ILE GLN GLU ALA LEU ARG HIS SEQRES 22 A 361 PRO TRP ILE THR PRO VAL ASP THR GLN GLN ALA MET VAL SEQRES 23 A 361 ARG ARG GLU SER VAL VAL ASN LEU GLU ASN PHE LYS LYS SEQRES 24 A 361 GLN TYR VAL ARG ARG ARG TRP LYS LEU SER PHE SER ILE SEQRES 25 A 361 VAL SER LEU CYS ASN HIS LEU THR ARG SER LEU MET LYS SEQRES 26 A 361 LYS VAL HIS LEU ARG THR SER GLU ASP LEU ARG ASN CYS SEQRES 27 A 361 GLU SER ASP THR GLU GLU ASN ILE ALA ARG ARG LYS ALA SEQRES 28 A 361 LEU HIS PRO ARG ARG ARG SER SER THR SER SEQRES 1 B 361 GLY MET GLU THR PHE LYS GLN GLN LYS VAL GLU ASP PHE SEQRES 2 B 361 TYR ASP ILE GLY GLU GLU LEU GLY SER GLY GLN PHE ALA SEQRES 3 B 361 ILE VAL LYS LYS CYS ARG GLU LYS SER THR GLY LEU GLU SEQRES 4 B 361 TYR ALA ALA LYS PHE ILE LYS LYS ARG GLN SER ARG ALA SEQRES 5 B 361 SER ARG ARG GLY VAL CYS ARG GLU GLU ILE GLU ARG GLU SEQRES 6 B 361 VAL SER ILE LEU ARG GLN VAL LEU HIS PRO ASN ILE ILE SEQRES 7 B 361 THR LEU HIS ASP VAL TYR GLU ASN ARG THR ASP VAL VAL SEQRES 8 B 361 LEU ILE LEU GLU LEU VAL SER GLY GLY GLU LEU PHE ASP SEQRES 9 B 361 PHE LEU ALA GLN LYS GLU SER LEU SER GLU GLU GLU ALA SEQRES 10 B 361 THR SER PHE ILE LYS GLN ILE LEU ASP GLY VAL ASN TYR SEQRES 11 B 361 LEU HIS THR LYS LYS ILE ALA HIS PHE ASP LEU LYS PRO SEQRES 12 B 361 GLU ASN ILE MET LEU LEU ASP LYS ASN ILE PRO ILE PRO SEQRES 13 B 361 HIS ILE LYS LEU ILE ASP PHE GLY LEU ALA HIS GLU ILE SEQRES 14 B 361 GLU ASP GLY VAL GLU PHE LYS ASN ILE PHE GLY THR PRO SEQRES 15 B 361 GLU PHE VAL ALA PRO GLU ILE VAL ASN TYR GLU PRO LEU SEQRES 16 B 361 GLY LEU GLU ALA ASP MET TRP SER ILE GLY VAL ILE THR SEQRES 17 B 361 TYR ILE LEU LEU SER GLY ALA SER PRO PHE LEU GLY ASP SEQRES 18 B 361 THR LYS GLN GLU THR LEU ALA ASN ILE THR ALA VAL SER SEQRES 19 B 361 TYR ASP PHE ASP GLU GLU PHE PHE SER GLN THR SER GLU SEQRES 20 B 361 LEU ALA LYS ASP PHE ILE ARG LYS LEU LEU VAL LYS GLU SEQRES 21 B 361 THR ARG LYS ARG LEU THR ILE GLN GLU ALA LEU ARG HIS SEQRES 22 B 361 PRO TRP ILE THR PRO VAL ASP THR GLN GLN ALA MET VAL SEQRES 23 B 361 ARG ARG GLU SER VAL VAL ASN LEU GLU ASN PHE LYS LYS SEQRES 24 B 361 GLN TYR VAL ARG ARG ARG TRP LYS LEU SER PHE SER ILE SEQRES 25 B 361 VAL SER LEU CYS ASN HIS LEU THR ARG SER LEU MET LYS SEQRES 26 B 361 LYS VAL HIS LEU ARG THR SER GLU ASP LEU ARG ASN CYS SEQRES 27 B 361 GLU SER ASP THR GLU GLU ASN ILE ALA ARG ARG LYS ALA SEQRES 28 B 361 LEU HIS PRO ARG ARG ARG SER SER THR SER HET ATP A1302 31 HET SO4 A1303 5 HET CA A1304 1 HET ATP B1302 31 HET SO4 B1303 5 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM SO4 SULFATE ION HETNAM CA CALCIUM ION FORMUL 3 ATP 2(C10 H16 N5 O13 P3) FORMUL 4 SO4 2(O4 S 2-) FORMUL 5 CA CA 2+ FORMUL 8 HOH *352(H2 O) HELIX 1 1 LYS A 8 ASP A 11 5 4 HELIX 2 2 CYS A 57 ARG A 69 1 13 HELIX 3 3 GLU A 100 ALA A 106 1 7 HELIX 4 4 SER A 112 LYS A 133 1 22 HELIX 5 5 LYS A 141 GLU A 143 5 3 HELIX 6 6 THR A 180 VAL A 184 5 5 HELIX 7 7 ALA A 185 ASN A 190 1 6 HELIX 8 8 LEU A 196 GLY A 213 1 18 HELIX 9 9 THR A 221 ALA A 231 1 11 HELIX 10 10 ASP A 237 SER A 242 1 6 HELIX 11 11 SER A 245 LEU A 256 1 12 HELIX 12 12 THR A 265 ARG A 271 1 7 HELIX 13 13 ASP A 279 SER A 289 1 11 HELIX 14 14 ASN A 292 TYR A 300 1 9 HELIX 15 15 LYS B 8 PHE B 12 1 5 HELIX 16 16 CYS B 57 VAL B 71 1 15 HELIX 17 17 GLU B 100 ALA B 106 1 7 HELIX 18 18 SER B 112 LYS B 133 1 22 HELIX 19 19 LYS B 141 GLU B 143 5 3 HELIX 20 20 THR B 180 VAL B 184 5 5 HELIX 21 21 ALA B 185 ASN B 190 1 6 HELIX 22 22 LEU B 196 GLY B 213 1 18 HELIX 23 23 THR B 221 ALA B 231 1 11 HELIX 24 24 ASP B 237 SER B 242 1 6 HELIX 25 25 SER B 245 LEU B 256 1 12 HELIX 26 26 THR B 265 HIS B 272 1 8 HELIX 27 27 ASP B 279 SER B 289 1 11 HELIX 28 28 LEU B 293 VAL B 301 1 9 SHEET 1 AA 5 TYR A 13 SER A 21 0 SHEET 2 AA 5 ALA A 25 GLU A 32 -1 O VAL A 27 N LEU A 19 SHEET 3 AA 5 GLU A 38 LYS A 45 -1 O TYR A 39 N CYS A 30 SHEET 4 AA 5 ASP A 88 LEU A 93 -1 O VAL A 89 N ILE A 44 SHEET 5 AA 5 LEU A 79 GLU A 84 -1 N HIS A 80 O ILE A 92 SHEET 1 AB 2 ILE A 135 ALA A 136 0 SHEET 2 AB 2 HIS A 166 GLU A 167 -1 O HIS A 166 N ALA A 136 SHEET 1 AC 2 ILE A 145 LEU A 147 0 SHEET 2 AC 2 ILE A 157 LEU A 159 -1 O LYS A 158 N MET A 146 SHEET 1 BA 5 TYR B 13 SER B 21 0 SHEET 2 BA 5 ALA B 25 GLU B 32 -1 O VAL B 27 N LEU B 19 SHEET 3 BA 5 GLU B 38 LYS B 45 -1 O TYR B 39 N CYS B 30 SHEET 4 BA 5 ASP B 88 GLU B 94 -1 O VAL B 89 N ILE B 44 SHEET 5 BA 5 LEU B 79 GLU B 84 -1 N HIS B 80 O ILE B 92 SHEET 1 BB 2 ILE B 135 ALA B 136 0 SHEET 2 BB 2 HIS B 166 GLU B 167 -1 O HIS B 166 N ALA B 136 SHEET 1 BC 2 ILE B 145 LEU B 147 0 SHEET 2 BC 2 ILE B 157 LEU B 159 -1 O LYS B 158 N MET B 146 LINK O ASN A 190 CA CA A1304 1555 1555 2.70 LINK CA CA A1304 O HOH A2103 1555 1555 2.73 LINK CA CA A1304 O HOH A2106 1555 1555 2.81 LINK CA CA A1304 O HOH A2109 1555 1555 2.69 LINK CA CA A1304 O ASN B 190 1555 1555 2.69 LINK CA CA A1304 O HOH B2107 1555 1555 2.76 SITE 1 AC1 15 LEU A 19 GLY A 22 GLN A 23 ALA A 25 SITE 2 AC1 15 VAL A 27 ALA A 40 LYS A 42 GLU A 94 SITE 3 AC1 15 VAL A 96 ASP A 139 ILE A 160 ASP A 161 SITE 4 AC1 15 HOH A2075 HOH A2082 HOH A2182 SITE 1 AC2 2 SER A 49 ARG A 50 SITE 1 AC3 6 ASN A 190 HOH A2103 HOH A2106 HOH A2109 SITE 2 AC3 6 ASN B 190 HOH B2107 SITE 1 AC4 18 LEU B 19 GLY B 20 SER B 21 GLY B 22 SITE 2 AC4 18 PHE B 24 VAL B 27 ALA B 40 LYS B 42 SITE 3 AC4 18 GLU B 94 VAL B 96 GLU B 100 ASN B 144 SITE 4 AC4 18 ASP B 161 HOH B2079 HOH B2166 HOH B2167 SITE 5 AC4 18 HOH B2169 HOH B2170 SITE 1 AC5 2 GLN A 299 ARG B 50 CRYST1 63.100 86.020 124.420 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015848 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011625 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008037 0.00000