HEADER TRANSCRIPTION 24-FEB-11 2YAT TITLE CRYSTAL STRUCTURE OF ESTRADIOL DERIVED METAL CHELATE AND ESTROGEN TITLE 2 RECEPTOR-LIGAND BINDING DOMAIN COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: ESTROGEN RECEPTOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LIGAND-BINDING DOMAIN, RESIDUES 301-551; COMPND 5 SYNONYM: ESTROGEN RECEPTOR ALPHA, ER, ER-ALPHA, ESTRADIOL RECEPTOR, COMPND 6 NUCLEAR RECEPTOR SUBFAMILY 3 GROUP A MEMBER 1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET21B KEYWDS TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR M.J.LI,H.M.GREENBLATT,O.DYM,S.ALBECK,H.DEGANI,J.L.SUSSMAN REVDAT 3 20-DEC-23 2YAT 1 REMARK REVDAT 2 16-MAY-12 2YAT 1 AUTHOR REMARK VERSN SEQADV REVDAT 1 01-JUN-11 2YAT 0 JRNL AUTH M.J.LI,H.M.GREENBLATT,O.DYM,S.ALBECK,A.PAIS,C.GUNANATHAN, JRNL AUTH 2 D.MILSTEIN,H.DEGANI,J.L.SUSSMAN JRNL TITL STRUCTURE OF ESTRADIOL METAL CHELATE AND ESTROGEN RECEPTOR JRNL TITL 2 COMPLEX: THE BASIS FOR DESIGNING A NEW CLASS OF SELECTIVE JRNL TITL 3 ESTROGEN RECEPTOR MODULATORS. JRNL REF J.MED.CHEM. V. 54 3575 2011 JRNL REFN ISSN 0022-2623 JRNL PMID 21473635 JRNL DOI 10.1021/JM200192Y REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.89 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 10065 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 486 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.8984 - 3.7516 1.00 3277 151 0.1737 0.1991 REMARK 3 2 3.7516 - 2.9780 1.00 3165 168 0.1804 0.2517 REMARK 3 3 2.9780 - 2.6016 1.00 3137 167 0.2267 0.3000 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.30 REMARK 3 SHRINKAGE RADIUS : 1.06 REMARK 3 K_SOL : 0.30 REMARK 3 B_SOL : 50.37 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.410 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 58.32 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 68.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.21550 REMARK 3 B22 (A**2) : 5.21550 REMARK 3 B33 (A**2) : -10.43090 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1906 REMARK 3 ANGLE : 2.133 2599 REMARK 3 CHIRALITY : 0.079 299 REMARK 3 PLANARITY : 0.004 310 REMARK 3 DIHEDRAL : 15.704 711 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 9:28) REMARK 3 ORIGIN FOR THE GROUP (A): -17.5932 -23.4011 -10.9726 REMARK 3 T TENSOR REMARK 3 T11: 0.7113 T22: 0.5535 REMARK 3 T33: 0.5210 T12: -0.4071 REMARK 3 T13: -0.0234 T23: 0.0870 REMARK 3 L TENSOR REMARK 3 L11: 4.0790 L22: 5.5273 REMARK 3 L33: 3.7677 L12: 1.3456 REMARK 3 L13: -0.4589 L23: 1.9141 REMARK 3 S TENSOR REMARK 3 S11: -0.5852 S12: -0.5125 S13: -0.7892 REMARK 3 S21: 1.3768 S22: 0.3095 S23: 0.1002 REMARK 3 S31: 1.0038 S32: -1.2877 S33: 0.2325 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 29:68) REMARK 3 ORIGIN FOR THE GROUP (A): -19.7564 -5.8906 -13.6106 REMARK 3 T TENSOR REMARK 3 T11: 0.2637 T22: 0.7745 REMARK 3 T33: 0.4139 T12: -0.0031 REMARK 3 T13: -0.0738 T23: 0.0418 REMARK 3 L TENSOR REMARK 3 L11: 0.6132 L22: 1.6664 REMARK 3 L33: 4.7578 L12: -1.0975 REMARK 3 L13: -0.1355 L23: -0.3350 REMARK 3 S TENSOR REMARK 3 S11: -0.1207 S12: -0.1942 S13: -0.0568 REMARK 3 S21: -0.0557 S22: 0.3367 S23: 0.2336 REMARK 3 S31: 0.0561 S32: -1.7951 S33: -0.1462 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 69:106) REMARK 3 ORIGIN FOR THE GROUP (A): -13.1755 -9.9809 -17.0237 REMARK 3 T TENSOR REMARK 3 T11: 0.2745 T22: 0.2806 REMARK 3 T33: 0.3309 T12: -0.0737 REMARK 3 T13: 0.0015 T23: 0.0054 REMARK 3 L TENSOR REMARK 3 L11: 1.6598 L22: 1.7393 REMARK 3 L33: 3.0804 L12: -1.0250 REMARK 3 L13: -1.7224 L23: -0.1652 REMARK 3 S TENSOR REMARK 3 S11: 0.0424 S12: 0.0896 S13: -0.2023 REMARK 3 S21: 0.0839 S22: 0.0199 S23: 0.1757 REMARK 3 S31: 0.1190 S32: -0.4380 S33: -0.0640 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 107:125) REMARK 3 ORIGIN FOR THE GROUP (A): -20.7045 -3.8305 -32.0310 REMARK 3 T TENSOR REMARK 3 T11: 0.4463 T22: 1.1042 REMARK 3 T33: 0.5599 T12: 0.0380 REMARK 3 T13: -0.0124 T23: 0.2388 REMARK 3 L TENSOR REMARK 3 L11: 0.5927 L22: 2.7149 REMARK 3 L33: 1.8832 L12: -1.0611 REMARK 3 L13: 0.4591 L23: 0.3683 REMARK 3 S TENSOR REMARK 3 S11: 0.2675 S12: 1.4994 S13: -0.6070 REMARK 3 S21: -0.8106 S22: 0.1618 S23: -0.3904 REMARK 3 S31: 0.0852 S32: -0.7625 S33: -0.5746 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 126:156) REMARK 3 ORIGIN FOR THE GROUP (A): -11.7652 -16.6718 -24.8591 REMARK 3 T TENSOR REMARK 3 T11: 0.4753 T22: 0.4611 REMARK 3 T33: 0.3380 T12: -0.2264 REMARK 3 T13: -0.0300 T23: -0.0196 REMARK 3 L TENSOR REMARK 3 L11: 2.1608 L22: 2.0317 REMARK 3 L33: 1.5294 L12: -1.8276 REMARK 3 L13: -0.9019 L23: -0.1523 REMARK 3 S TENSOR REMARK 3 S11: 0.0053 S12: 0.4442 S13: -0.1094 REMARK 3 S21: -0.2748 S22: -0.0432 S23: -0.0920 REMARK 3 S31: 0.6217 S32: -0.6056 S33: 0.0142 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 157:168) REMARK 3 ORIGIN FOR THE GROUP (A): 3.2804 -11.4172 -5.5460 REMARK 3 T TENSOR REMARK 3 T11: 0.6597 T22: 0.9741 REMARK 3 T33: 1.0770 T12: 0.0801 REMARK 3 T13: 0.1594 T23: -0.0028 REMARK 3 L TENSOR REMARK 3 L11: 3.9903 L22: 2.2688 REMARK 3 L33: 8.9271 L12: -0.1756 REMARK 3 L13: 0.0302 L23: -1.8428 REMARK 3 S TENSOR REMARK 3 S11: 0.4729 S12: -0.4266 S13: -1.5799 REMARK 3 S21: 0.0540 S22: 1.1031 S23: 0.4189 REMARK 3 S31: -0.2402 S32: 2.3474 S33: -1.1796 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 169:190) REMARK 3 ORIGIN FOR THE GROUP (A): -2.4832 -23.4808 -9.3842 REMARK 3 T TENSOR REMARK 3 T11: 1.0350 T22: 0.3898 REMARK 3 T33: 0.5622 T12: -0.0113 REMARK 3 T13: 0.0958 T23: 0.0265 REMARK 3 L TENSOR REMARK 3 L11: 2.3117 L22: 1.9064 REMARK 3 L33: 5.2162 L12: 0.0377 REMARK 3 L13: 1.1317 L23: 2.4539 REMARK 3 S TENSOR REMARK 3 S11: 0.4158 S12: -0.3161 S13: -0.3175 REMARK 3 S21: 1.2948 S22: -0.0872 S23: -0.3783 REMARK 3 S31: 2.2712 S32: 0.4843 S33: -0.1938 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 191:206) REMARK 3 ORIGIN FOR THE GROUP (A): -5.3406 -31.7061 -26.2872 REMARK 3 T TENSOR REMARK 3 T11: 1.1162 T22: 0.3880 REMARK 3 T33: 0.6640 T12: -0.2648 REMARK 3 T13: 0.0097 T23: -0.1216 REMARK 3 L TENSOR REMARK 3 L11: 0.9863 L22: 0.2451 REMARK 3 L33: 0.6418 L12: -0.1845 REMARK 3 L13: -0.1114 L23: -0.2288 REMARK 3 S TENSOR REMARK 3 S11: -0.0012 S12: 0.3382 S13: -0.5962 REMARK 3 S21: -0.1973 S22: -0.3865 S23: -0.0479 REMARK 3 S31: 1.1430 S32: -0.3464 S33: 0.2605 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 207:231) REMARK 3 ORIGIN FOR THE GROUP (A): -5.7319 -4.2136 -22.9085 REMARK 3 T TENSOR REMARK 3 T11: 0.2710 T22: 0.3123 REMARK 3 T33: 0.3542 T12: -0.0485 REMARK 3 T13: -0.0062 T23: 0.0278 REMARK 3 L TENSOR REMARK 3 L11: 2.8972 L22: 5.3007 REMARK 3 L33: 2.0437 L12: -2.5630 REMARK 3 L13: -0.6476 L23: -2.0236 REMARK 3 S TENSOR REMARK 3 S11: 0.6686 S12: 0.5878 S13: 0.5478 REMARK 3 S21: 0.1599 S22: -1.2412 S23: -0.6152 REMARK 3 S31: -0.3904 S32: -0.0096 S33: 0.2469 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 232:248) REMARK 3 ORIGIN FOR THE GROUP (A): -13.1000 6.0728 -13.1226 REMARK 3 T TENSOR REMARK 3 T11: 0.6635 T22: 0.4807 REMARK 3 T33: 0.5186 T12: -0.0415 REMARK 3 T13: -0.0562 T23: 0.1407 REMARK 3 L TENSOR REMARK 3 L11: 6.4822 L22: 3.3006 REMARK 3 L33: 3.4476 L12: 1.9597 REMARK 3 L13: 2.3381 L23: 3.1890 REMARK 3 S TENSOR REMARK 3 S11: -0.1933 S12: -0.3007 S13: 1.0993 REMARK 3 S21: 0.3896 S22: -0.4480 S23: 0.0078 REMARK 3 S31: -1.3639 S32: -0.3438 S33: 0.5435 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RESIDUES 331-340, 414-422, 462-463 ARE REMARK 3 DISORDERED. REMARK 4 REMARK 4 2YAT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1290047447. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10104 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 19.90 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.70 REMARK 200 R MERGE FOR SHELL (I) : 0.67000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 2P15 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% POLYETHYLENE GLYCOL MONOMETHYL REMARK 280 ETHER 5000, 5% TACSIMATE25, 0.1 M HEPES, PH 7.0. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 1 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -Y,-X,-Z+1/3 REMARK 290 5555 -X+Y,Y,-Z+2/3 REMARK 290 6555 X,X-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 88.89667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 44.44833 REMARK 290 SMTRY1 4 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 44.44833 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 88.89667 REMARK 290 SMTRY1 6 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -44.44833 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2022 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, CYS 381 TO SER REMARK 400 ENGINEERED RESIDUE IN CHAIN A, CYS 417 TO SER REMARK 400 ENGINEERED RESIDUE IN CHAIN A, CYS 530 TO SER REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 300 REMARK 465 TYR A 331 REMARK 465 ASP A 332 REMARK 465 PRO A 333 REMARK 465 THR A 334 REMARK 465 ARG A 335 REMARK 465 PRO A 336 REMARK 465 PHE A 337 REMARK 465 SER A 338 REMARK 465 GLU A 339 REMARK 465 ALA A 340 REMARK 465 GLN A 414 REMARK 465 GLY A 415 REMARK 465 LYS A 416 REMARK 465 SER A 417 REMARK 465 VAL A 418 REMARK 465 GLU A 419 REMARK 465 GLY A 420 REMARK 465 MET A 421 REMARK 465 VAL A 422 REMARK 465 LEU A 462 REMARK 465 SER A 463 REMARK 465 LEU A 549 REMARK 465 HIS A 550 REMARK 465 ALA A 551 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 301 OG REMARK 470 LYS A 303 CG CD CE NZ REMARK 470 ASN A 304 CG OD1 ND2 REMARK 470 LEU A 306 CG CD1 CD2 REMARK 470 SER A 464 OG REMARK 470 LEU A 466 CG CD1 CD2 REMARK 470 VAL A 533 CG1 CG2 REMARK 470 VAL A 534 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 303 -44.18 178.96 REMARK 500 ASP A 411 -156.45 -137.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 EU A1550 EU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 EEU A1549 N1 REMARK 620 2 EEU A1549 N2 63.1 REMARK 620 3 EEU A1549 N3 60.0 122.9 REMARK 620 4 EEU A1549 O3 85.3 76.4 102.9 REMARK 620 5 EEU A1549 O4 126.5 64.0 172.6 75.5 REMARK 620 6 EEU A1549 O5 125.4 171.4 65.7 102.1 107.4 REMARK 620 7 EEU A1549 O6 91.0 102.6 74.4 176.2 107.5 79.4 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 1551 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 1552 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN A OF RESIDUES 1549 TO REMARK 800 1550 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1XP1 RELATED DB: PDB REMARK 900 HUMAN ESTROGEN RECEPTOR ALPHA LIGAND-BINDING DOMAIN INCOMPLEX WITH REMARK 900 COMPOUND 15 REMARK 900 RELATED ID: 1QKT RELATED DB: PDB REMARK 900 RELATED ID: 1R5K RELATED DB: PDB REMARK 900 HUMAN ESTROGEN RECEPTOR ALPHA LIGAND-BINDING DOMAIN INCOMPLEX WITH REMARK 900 GW5638 REMARK 900 RELATED ID: 1ZKY RELATED DB: PDB REMARK 900 HUMAN ESTROGEN RECEPTOR ALPHA LIGAND-BINDING DOMAIN INCOMPLEX WITH REMARK 900 OBCP-3M AND A GLUCOCORTICOID RECEPTORINTERACTING PROTEIN 1 NR BOX REMARK 900 II PEPTIDE REMARK 900 RELATED ID: 2BJ4 RELATED DB: PDB REMARK 900 ESTROGEN RECEPTOR ALPHA LBD IN COMPLEX WITH A PHAGE- DISPLAY REMARK 900 DERIVED PEPTIDE ANTAGONIST REMARK 900 RELATED ID: 1HCP RELATED DB: PDB REMARK 900 MOL_ID: 1; MOLECULE: HUMAN/CHICKEN ESTROGEN RECEPTOR; CHAIN: NULL; REMARK 900 DOMAIN: DEOXYRIBONUCLEIC ACID-BINDING DOMAIN (ERDBD); ENGINEERED: REMARK 900 YES REMARK 900 RELATED ID: 1AKF RELATED DB: PDB REMARK 900 HOMOLOGOUS-EXTENSION-BASED MODEL OF HUMAN ESTROGEN RECEPTOR WITH REMARK 900 BOUND ESTRADIOL, THEORETICAL MODEL REMARK 900 RELATED ID: 1HCQ RELATED DB: PDB REMARK 900 MOL_ID: 1; MOLECULE: HUMAN/CHICKEN ESTROGEN RECEPTOR; CHAIN: A, B, REMARK 900 E, F; DOMAIN: DEOXYRIBONUCLEIC ACID- BINDING DOMAIN (ERDBD); REMARK 900 ENGINEERED: YES; MOL_ID: 2; MOLECULE: DEOXYRIBONUCLEIC ACID (5'-D( REMARK 900 CPCPAPGPGPTPCPAPCPAPGPTPGP APCPCPTPG)-3') (DOT) DEOXYRIBONUCLEIC REMARK 900 ACID (5'-D(CPCPAPGPGPTPCPA PCPTPGPTPGPAPCPCPTPG)-3'); CHAIN: C, D, REMARK 900 G, H REMARK 900 RELATED ID: 1A52 RELATED DB: PDB REMARK 900 ESTROGEN RECEPTOR ALPHA LIGAND-BINDING DOMAIN COMPLEXED TO ESTRADIOL REMARK 900 RELATED ID: 1QKU RELATED DB: PDB REMARK 900 RELATED ID: 1XP6 RELATED DB: PDB REMARK 900 HUMAN ESTROGEN RECEPTOR ALPHA LIGAND-BINDING DOMAIN INCOMPLEX WITH REMARK 900 COMPOUND 16 REMARK 900 RELATED ID: 1G50 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A WILD TYPE HER ALPHA LBD AT 2.9ANGSTROM REMARK 900 RESOLUTION REMARK 900 RELATED ID: 1PCG RELATED DB: PDB REMARK 900 HELIX-STABILIZED CYCLIC PEPTIDES AS SELECTIVE INHIBITORS OFSTEROID REMARK 900 RECEPTOR-COACTIVATOR INTERACTIONS REMARK 900 RELATED ID: 2JF9 RELATED DB: PDB REMARK 900 ESTROGEN RECEPTOR ALPHA LBD IN COMPLEX WITH A TAMOXIFEN-SPECIFIC REMARK 900 PEPTIDE ANTAGONIST REMARK 900 RELATED ID: 2B1V RELATED DB: PDB REMARK 900 HUMAN ESTROGEN RECEPTOR ALPHA LIGAND-BINDING DOMAIN INCOMPLEX WITH REMARK 900 OBCP-1M AND A GLUCOCORTICOID RECEPTORINTERACTING PROTEIN 1 NR BOX REMARK 900 II PEPTIDE REMARK 900 RELATED ID: 1UOM RELATED DB: PDB REMARK 900 THE STRUCTURE OF ESTROGEN RECEPTOR IN COMPLEX WITH A SELECTIVE AND REMARK 900 POTENT TETRAHYDROISOCHIOLIN LIGAND. REMARK 900 RELATED ID: 1YIM RELATED DB: PDB REMARK 900 HUMAN ESTROGEN RECEPTOR ALPHA LIGAND-BINDING DOMAIN INCOMPLEX WITH REMARK 900 COMPOUND 4 REMARK 900 RELATED ID: 2AYR RELATED DB: PDB REMARK 900 A SERM DESIGNED FOR THE TREATMENT OF UTERINE LEIOMYOMA WITHUNIQUE REMARK 900 TISSUE SPECIFICITY FOR UTERUS AND OVARIES IN RATS REMARK 900 RELATED ID: 3ERT RELATED DB: PDB REMARK 900 HUMAN ESTROGEN RECEPTOR ALPHA LIGAND-BINDING DOMAIN IN COMPLEX WITH REMARK 900 4-HYDROXYTAMOXIFEN REMARK 900 RELATED ID: 1YIN RELATED DB: PDB REMARK 900 HUMAN ESTROGEN RECEPTOR ALPHA LIGAND-BINDING DOMAIN INCOMPLEX WITH REMARK 900 COMPOUND 3F REMARK 900 RELATED ID: 1ERR RELATED DB: PDB REMARK 900 HUMAN ESTROGEN RECEPTOR LIGAND-BINDING DOMAIN IN COMPLEX WITH REMARK 900 RALOXIFENE REMARK 900 RELATED ID: 1X7R RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ESTROGEN RECEPTOR ALPHA COMPLEXED WITHGENISTEIN REMARK 900 RELATED ID: 3ERD RELATED DB: PDB REMARK 900 HUMAN ESTROGEN RECEPTOR ALPHA LIGAND-BINDING DOMAIN INCOMPLEX WITH REMARK 900 DIETHYLSTILBESTROL AND A GLUCOCORTICOIDRECEPTOR INTERACTING PROTEIN REMARK 900 1 NR BOX II PEPTIDE REMARK 900 RELATED ID: 1L2I RELATED DB: PDB REMARK 900 HUMAN ESTROGEN RECEPTOR ALPHA LIGAND-BINDING DOMAIN INCOMPLEX WITH REMARK 900 (R,R)-5,11-CIS-DIETHYL-5,6,11,12 -TETRAHYDROCHRYSENE-2,8-DIOL AND A REMARK 900 GLUCOCORTICOID RECEPTORINTERACTING PROTEIN 1 NR BOX II PEPTIDE REMARK 900 RELATED ID: 2FAI RELATED DB: PDB REMARK 900 HUMAN ESTROGEN RECEPTOR ALPHA LIGAND-BINDING DOMAIN INCOMPLEX WITH REMARK 900 OBCP-2M AND A GLUCOCORTICOID RECEPTORINTERACTING PROTEIN 1 NR BOX REMARK 900 II PEPTIDE REMARK 900 RELATED ID: 1XP9 RELATED DB: PDB REMARK 900 HUMAN ESTROGEN RECEPTOR ALPHA LIGAND-BINDING DOMAIN INCOMPLEX WITH REMARK 900 COMPOUND 18 REMARK 900 RELATED ID: 2JFA RELATED DB: PDB REMARK 900 ESTROGEN RECEPTOR ALPHA LBD IN COMPLEX WITH AN AFFINITY-SELECTED REMARK 900 COREPRESSOR PEPTIDE REMARK 900 RELATED ID: 1GWR RELATED DB: PDB REMARK 900 HUMAN OESTROGEN RECEPTOR ALPHA LIGAND-BINDING DOMAIN IN COMPLEX REMARK 900 WITH 17BETA-OESTRADIOL AND TIF2 NRBOX3 PEPTIDE REMARK 900 RELATED ID: 1SJ0 RELATED DB: PDB REMARK 900 HUMAN ESTROGEN RECEPTOR ALPHA LIGAND-BINDING DOMAIN INCOMPLEX WITH REMARK 900 THE ANTAGONIST LIGAND 4-D REMARK 900 RELATED ID: 1GWQ RELATED DB: PDB REMARK 900 HUMAN OESTROGEN RECEPTOR ALPHA LIGAND-BINDING DOMAIN IN COMPLEX REMARK 900 WITH RALOXIFENE CORE AND TIF2 NRBOX2 PEPTIDE REMARK 900 RELATED ID: 1XPC RELATED DB: PDB REMARK 900 HUMAN ESTROGEN RECEPTOR ALPHA LIGAND-BINDING DOMAIN INCOMPLEX WITH REMARK 900 COMPOUND 19 REMARK 900 RELATED ID: 1X7E RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ESTROGEN RECEPTOR ALPHA COMPLEXED WITHWAY-244 REMARK 900 RELATED ID: 1XQC RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF ERALPHA LBD BOUND TO ATETRAHYDROISOQUINOLINE REMARK 900 SERM LIGAND AT 2.05A RESOLUTION REMARK 900 RELATED ID: 1ERE RELATED DB: PDB REMARK 900 HUMAN ESTROGEN RECEPTOR LIGAND-BINDING DOMAIN IN COMPLEX WITH REMARK 900 17BETA-ESTRADIOL REMARK 999 REMARK 999 SEQUENCE REMARK 999 HUMAN ESTROGEN RECEPTOR ALPHA LIGAND-BINDING DOMAIN REMARK 999 SEQUENCE OF THIS STRUCTURE RANGES BETWEEN RESIDUES SER301 REMARK 999 AND ALA551, WITH THREE MUTATIONS, C381S, C417S, AND C530S. DBREF 2YAT A 301 551 UNP P03372 ESR1_HUMAN 301 551 SEQADV 2YAT MET A 300 UNP P03372 EXPRESSION TAG SEQADV 2YAT SER A 381 UNP P03372 CYS 381 ENGINEERED MUTATION SEQADV 2YAT SER A 417 UNP P03372 CYS 417 ENGINEERED MUTATION SEQADV 2YAT SER A 530 UNP P03372 CYS 530 ENGINEERED MUTATION SEQRES 1 A 252 MET SER LYS LYS ASN SER LEU ALA LEU SER LEU THR ALA SEQRES 2 A 252 ASP GLN MET VAL SER ALA LEU LEU ASP ALA GLU PRO PRO SEQRES 3 A 252 ILE LEU TYR SER GLU TYR ASP PRO THR ARG PRO PHE SER SEQRES 4 A 252 GLU ALA SER MET MET GLY LEU LEU THR ASN LEU ALA ASP SEQRES 5 A 252 ARG GLU LEU VAL HIS MET ILE ASN TRP ALA LYS ARG VAL SEQRES 6 A 252 PRO GLY PHE VAL ASP LEU THR LEU HIS ASP GLN VAL HIS SEQRES 7 A 252 LEU LEU GLU SER ALA TRP LEU GLU ILE LEU MET ILE GLY SEQRES 8 A 252 LEU VAL TRP ARG SER MET GLU HIS PRO GLY LYS LEU LEU SEQRES 9 A 252 PHE ALA PRO ASN LEU LEU LEU ASP ARG ASN GLN GLY LYS SEQRES 10 A 252 SER VAL GLU GLY MET VAL GLU ILE PHE ASP MET LEU LEU SEQRES 11 A 252 ALA THR SER SER ARG PHE ARG MET MET ASN LEU GLN GLY SEQRES 12 A 252 GLU GLU PHE VAL CYS LEU LYS SER ILE ILE LEU LEU ASN SEQRES 13 A 252 SER GLY VAL TYR THR PHE LEU SER SER THR LEU LYS SER SEQRES 14 A 252 LEU GLU GLU LYS ASP HIS ILE HIS ARG VAL LEU ASP LYS SEQRES 15 A 252 ILE THR ASP THR LEU ILE HIS LEU MET ALA LYS ALA GLY SEQRES 16 A 252 LEU THR LEU GLN GLN GLN HIS GLN ARG LEU ALA GLN LEU SEQRES 17 A 252 LEU LEU ILE LEU SER HIS ILE ARG HIS MET SER ASN LYS SEQRES 18 A 252 GLY MET GLU HIS LEU TYR SER MET LYS SER LYS ASN VAL SEQRES 19 A 252 VAL PRO LEU TYR ASP LEU LEU LEU GLU MET LEU ASP ALA SEQRES 20 A 252 HIS ARG LEU HIS ALA HET EU A1550 1 HET EEU A1549 48 HET FMT A1551 3 HET FMT A1552 3 HETNAM EU EUROPIUM ION HETNAM EEU ESTRADIOL-PYRIDINIUM TETRAACETIC ACID HETNAM FMT FORMIC ACID FORMUL 2 EU EU 2+ FORMUL 3 EEU C35 H41 N3 O10 FORMUL 4 FMT 2(C H2 O2) FORMUL 6 HOH *28(H2 O) HELIX 1 1 SER A 305 LEU A 310 5 6 HELIX 2 2 THR A 311 GLU A 323 1 13 HELIX 3 3 SER A 341 ARG A 363 1 23 HELIX 4 4 GLY A 366 LEU A 370 5 5 HELIX 5 5 THR A 371 SER A 395 1 25 HELIX 6 6 GLU A 423 ASN A 439 1 17 HELIX 7 7 GLN A 441 GLY A 457 1 17 HELIX 8 8 VAL A 458 PHE A 461 5 4 HELIX 9 9 THR A 465 ALA A 493 1 29 HELIX 10 10 THR A 496 ASN A 532 1 37 HELIX 11 11 TYR A 537 ALA A 546 1 10 SHEET 1 AA 2 LEU A 402 ALA A 405 0 SHEET 2 AA 2 LEU A 408 LEU A 410 -1 O LEU A 408 N PHE A 404 LINK N1 EEU A1549 EU EU A1550 1555 1555 2.62 LINK N2 EEU A1549 EU EU A1550 1555 1555 2.60 LINK N3 EEU A1549 EU EU A1550 1555 1555 2.73 LINK O3 EEU A1549 EU EU A1550 1555 1555 2.46 LINK O4 EEU A1549 EU EU A1550 1555 1555 2.52 LINK O5 EEU A1549 EU EU A1550 1555 1555 2.52 LINK O6 EEU A1549 EU EU A1550 1555 1555 2.49 SITE 1 AC1 2 LEU A 327 PHE A 404 SITE 1 AC2 4 ALA A 322 HIS A 356 TRP A 360 ARG A 363 SITE 1 AC3 11 MET A 342 LEU A 346 GLU A 353 ARG A 394 SITE 2 AC3 11 PHE A 404 GLU A 423 PHE A 425 GLY A 521 SITE 3 AC3 11 HIS A 524 LEU A 525 HOH A2004 CRYST1 64.693 64.693 133.345 90.00 90.00 120.00 P 32 1 2 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015458 0.008924 0.000000 0.00000 SCALE2 0.000000 0.017849 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007499 0.00000