HEADER HYDROLASE 25-FEB-11 2YAY TITLE THE CRYSTAL STRUCTURE OF LEISHMANIA MAJOR DUTPASE IN COMPLEX WITH TITLE 2 SUBSTRATE ANALOGUE DUPNPP COMPND MOL_ID: 1; COMPND 2 MOLECULE: DUTPASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DEOXYURIDINE TRIPHOSPHATASE (DUTP DIPHOSPHATASE), COMPND 5 DEOXYURIDINE TRIPHOSPHATE NUCLEOTIDOHYDROLASE; COMPND 6 EC: 3.6.1.23; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEISHMANIA MAJOR; SOURCE 3 ORGANISM_TAXID: 5664; SOURCE 4 STRAIN: 252; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET-YSBLLIC3C KEYWDS HYDROLASE, LEISHMANIASIS EXPDTA X-RAY DIFFRACTION AUTHOR G.R.HEMSWORTH,O.V.MOROZ,M.J.FOGG,B.SCOTT,C.BOSCH-NAVARRETE, AUTHOR 2 D.GONZALEZ-PACANOWSKA,K.S.WILSON REVDAT 3 20-DEC-23 2YAY 1 REMARK LINK REVDAT 2 11-MAY-11 2YAY 1 JRNL REVDAT 1 16-MAR-11 2YAY 0 JRNL AUTH G.R.HEMSWORTH,O.V.MOROZ,M.J.FOGG,B.SCOTT,C.BOSCH-NAVARRETE, JRNL AUTH 2 D.GONZALEZ-PACANOWSKA,K.S.WILSON JRNL TITL THE CRYSTAL STRUCTURE OF THE LEISHMANIA MAJOR DEOXYURIDINE JRNL TITL 2 TRIPHOSPHATE NUCLEOTIDOHYDROLASE IN COMPLEX WITH NUCLEOTIDE JRNL TITL 3 ANALOGUES, DUMP, AND DEOXYURIDINE. JRNL REF J.BIOL.CHEM. V. 286 16470 2011 JRNL REFN ISSN 0021-9258 JRNL PMID 21454646 JRNL DOI 10.1074/JBC.M111.224873 REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.42 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 25688 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1353 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.86 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.91 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1886 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.3800 REMARK 3 BIN FREE R VALUE SET COUNT : 88 REMARK 3 BIN FREE R VALUE : 0.4680 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1943 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 55 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : -0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.139 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.134 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.116 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.253 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2020 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1266 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2768 ; 1.469 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3084 ; 0.994 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 256 ; 5.622 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 85 ;34.421 ;24.118 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 284 ;12.748 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;13.958 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 312 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2283 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 422 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1286 ;28.406 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 511 ; 2.561 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2039 ;25.310 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 734 ;26.428 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 729 ;19.542 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 8 A 44 REMARK 3 ORIGIN FOR THE GROUP (A): -1.8460 29.8090 1.1520 REMARK 3 T TENSOR REMARK 3 T11: 0.0976 T22: 0.2228 REMARK 3 T33: 0.1658 T12: 0.0165 REMARK 3 T13: -0.0458 T23: 0.1482 REMARK 3 L TENSOR REMARK 3 L11: 6.5652 L22: 3.7999 REMARK 3 L33: 5.0247 L12: -2.3775 REMARK 3 L13: -0.0591 L23: -1.2468 REMARK 3 S TENSOR REMARK 3 S11: -0.4190 S12: -0.3641 S13: -0.2308 REMARK 3 S21: 0.2865 S22: 0.1332 S23: -0.2696 REMARK 3 S31: 0.3490 S32: 0.5892 S33: 0.2857 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 45 A 170 REMARK 3 ORIGIN FOR THE GROUP (A): -8.7000 46.3450 -2.4580 REMARK 3 T TENSOR REMARK 3 T11: 0.1988 T22: 0.1845 REMARK 3 T33: 0.1549 T12: -0.1054 REMARK 3 T13: -0.1233 T23: 0.0594 REMARK 3 L TENSOR REMARK 3 L11: 4.3982 L22: 3.8470 REMARK 3 L33: 1.8895 L12: -2.1492 REMARK 3 L13: 0.8370 L23: -1.4069 REMARK 3 S TENSOR REMARK 3 S11: -0.2586 S12: -0.3056 S13: 0.6215 REMARK 3 S21: 0.7053 S22: -0.0439 S23: -0.4408 REMARK 3 S31: -0.4747 S32: 0.1377 S33: 0.3024 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 171 A 250 REMARK 3 ORIGIN FOR THE GROUP (A): -17.0490 27.7380 7.0000 REMARK 3 T TENSOR REMARK 3 T11: 0.0824 T22: 0.2209 REMARK 3 T33: 0.2038 T12: 0.0079 REMARK 3 T13: 0.0578 T23: 0.1924 REMARK 3 L TENSOR REMARK 3 L11: 5.4355 L22: 5.6147 REMARK 3 L33: 5.1303 L12: -0.9445 REMARK 3 L13: -0.2546 L23: 0.2378 REMARK 3 S TENSOR REMARK 3 S11: -0.1720 S12: -0.6340 S13: -0.5940 REMARK 3 S21: 0.4861 S22: 0.2889 S23: 0.4657 REMARK 3 S31: 0.0384 S32: -0.1718 S33: -0.1170 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2YAY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1290047479. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25978 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 43.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 17.10 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.90 REMARK 200 R MERGE FOR SHELL (I) : 0.91000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: PDB ENTRY 2CJE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CACL2, 0.1 M MES PH 6.0, 20% PEG REMARK 280 6000. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 96.85333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 48.42667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 72.64000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 24.21333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 121.06667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 96.85333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 48.42667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 24.21333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 72.64000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 121.06667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -78.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 -43.41500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 75.19699 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -24.21333 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 PRO A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 ARG A 3 REMARK 465 ALA A 4 REMARK 465 ARG A 5 REMARK 465 SER A 6 REMARK 465 ALA A 7 REMARK 465 ALA A 265 REMARK 465 ILE A 266 REMARK 465 LYS A 267 REMARK 465 ALA A 268 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 8 CG OD1 ND2 REMARK 470 LEU A 14 CD1 CD2 REMARK 470 ASN A 65 CG OD1 ND2 REMARK 470 ARG A 92 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 107 CG CD1 CD2 REMARK 470 LYS A 108 CG CD CE NZ REMARK 470 GLU A 109 CG CD OE1 OE2 REMARK 470 LEU A 115 CG CD1 CD2 REMARK 470 LYS A 118 CG CD CE NZ REMARK 470 GLU A 119 CG CD OE1 OE2 REMARK 470 SER A 122 OG REMARK 470 GLU A 159 CG CD OE1 OE2 REMARK 470 GLU A 166 CG CD OE1 OE2 REMARK 470 VAL A 197 CG1 CG2 REMARK 470 VAL A 199 CG1 CG2 REMARK 470 ASN A 200 CG OD1 ND2 REMARK 470 ASN A 201 CG OD1 ND2 REMARK 470 ILE A 213 CG1 CG2 CD1 REMARK 470 LYS A 214 CG CD CE NZ REMARK 470 ASP A 215 CG OD1 OD2 REMARK 470 VAL A 216 CG1 CG2 REMARK 470 LEU A 218 CG CD1 CD2 REMARK 470 ASP A 219 CG OD1 OD2 REMARK 470 GLU A 220 CG CD OE1 OE2 REMARK 470 ASP A 225 CG OD1 OD2 REMARK 470 LYS A 226 CG CD CE NZ REMARK 470 GLN A 229 CG CD OE1 NE2 REMARK 470 GLU A 240 CG CD OE1 OE2 REMARK 470 LYS A 245 CG CD CE NZ REMARK 470 GLU A 246 CG CD OE1 OE2 REMARK 470 LEU A 258 CD1 CD2 REMARK 470 LYS A 260 CG CD CE NZ REMARK 470 ASN A 262 CG OD1 ND2 REMARK 470 LEU A 264 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 31 49.73 -101.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1266 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 48 OE1 REMARK 620 2 GLU A 48 OE2 44.7 REMARK 620 3 GLU A 51 OE1 59.7 99.0 REMARK 620 4 GLU A 51 OE2 81.4 92.2 48.1 REMARK 620 5 DUP A1265 O2A 113.8 91.5 149.1 160.9 REMARK 620 6 DUP A1265 O1B 65.9 99.4 67.4 115.5 82.3 REMARK 620 7 DUP A1265 O1G 123.9 168.6 71.2 85.5 94.4 71.8 REMARK 620 8 HOH A2011 O 116.6 77.0 125.9 77.9 84.7 166.4 113.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1267 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 48 OE1 REMARK 620 2 GLU A 51 OE1 78.0 REMARK 620 3 GLU A 76 OE1 99.2 89.5 REMARK 620 4 ASP A 79 OD2 86.4 164.3 94.4 REMARK 620 5 DUP A1265 O1B 88.6 81.7 166.8 96.7 REMARK 620 6 HOH A2026 O 175.8 103.1 84.9 92.4 87.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DUP A 1265 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1266 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1267 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2YAZ RELATED DB: PDB REMARK 900 THE CRYSTAL STRUCTURE OF LEISHMANIA MAJOR DUTPASE IN COMPLEX DUMP REMARK 900 RELATED ID: 2YB0 RELATED DB: PDB REMARK 900 THE CRYSTAL STRUCTURE OF LEISHMANIA MAJOR DUTPASE IN COMPLEX REMARK 900 DEOXYURIDINE REMARK 900 RELATED ID: 2CJE RELATED DB: PDB REMARK 900 THE CRYSTAL STRUCTURE OF A COMPLEX OF LEISHMANIA MAJOR DUTPASE WITH REMARK 900 SUBSTRATE ANALOGUE DUPNHP REMARK 900 RELATED ID: 2CIC RELATED DB: PDB REMARK 900 THE CRYSTAL STRUCTURE OF A COMPLEX OF CAMPYLOBACTER JEJUNI DUTPASE REMARK 900 WITH SUBSTRATE ANALOGUE DUPNHPP DBREF 2YAY A 1 268 UNP O15826 O15826_LEIMA 1 268 SEQADV 2YAY GLY A -2 UNP O15826 EXPRESSION TAG SEQADV 2YAY PRO A -1 UNP O15826 EXPRESSION TAG SEQADV 2YAY ALA A 0 UNP O15826 EXPRESSION TAG SEQRES 1 A 271 GLY PRO ALA MET LYS ARG ALA ARG SER ALA ASN ILE PRO SEQRES 2 A 271 GLY ALA ILE LEU HIS SER LEU ALA GLU LEU GLN ASP GLY SEQRES 3 A 271 LEU ASN ALA MET ILE ASP PRO SER TRP ARG ALA VAL ARG SEQRES 4 A 271 SER LEU ASP ASN TRP ALA LEU ALA ILE THR MET GLU SER SEQRES 5 A 271 THR GLU LEU LEU ASP SER TYR PRO TRP LYS TRP TRP LYS SEQRES 6 A 271 ASN LEU ASN ALA THR PRO ASP LEU ALA ASN VAL ARG ILE SEQRES 7 A 271 GLU LEU VAL ASP ILE PHE HIS PHE SER LEU SER GLY ALA SEQRES 8 A 271 MET GLN MET ARG SER THR PRO ASP ASP GLU ILE PRO ALA SEQRES 9 A 271 ALA SER LEU LYS PRO LEU LYS GLU VAL MET THR THR PHE SEQRES 10 A 271 LEU PRO ALA LYS GLU CYS THR SER ASP PRO TYR GLY PHE SEQRES 11 A 271 VAL PHE PHE PRO LEU THR ASP THR GLN ASN ALA ILE ALA SEQRES 12 A 271 SER PHE ARG ASN ILE ILE GLN LEU ALA ASN ALA TYR ARG SEQRES 13 A 271 PHE ASP VAL ILE ILE GLU CYS ILE ILE TYR ALA ALA GLU SEQRES 14 A 271 ASP LEU GLY PHE ASN LEU VAL ALA TYR TYR ILE ALA LYS SEQRES 15 A 271 HIS THR LEU ASN CYS ILE ARG GLN LEU SER GLY TYR LYS SEQRES 16 A 271 ASP GLY SER TYR VAL LYS VAL ASN ASN GLY VAL GLU ASP SEQRES 17 A 271 ASN SER LEU LEU HIS ASN CYS ILE LYS ASP VAL SER LEU SEQRES 18 A 271 ASP GLU VAL LEU ASP ALA ASP LYS TYR VAL GLN ALA TRP SEQRES 19 A 271 ASN SER ILE MET ALA ASN VAL TYR GLU ALA PHE GLN ILE SEQRES 20 A 271 LYS GLU SER ASP ARG LYS ASP ALA GLU ARG TRP PHE ALA SEQRES 21 A 271 LEU ALA LYS GLU ASN ARG LEU ALA ILE LYS ALA HET DUP A1265 28 HET CA A1266 1 HET CA A1267 1 HETNAM DUP 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE HETNAM CA CALCIUM ION FORMUL 2 DUP C9 H16 N3 O13 P3 FORMUL 3 CA 2(CA 2+) FORMUL 5 HOH *55(H2 O) HELIX 1 1 PRO A 10 ASP A 29 1 20 HELIX 2 2 SER A 31 ARG A 36 1 6 HELIX 3 3 SER A 37 ASP A 54 1 18 HELIX 4 4 ASP A 69 SER A 93 1 25 HELIX 5 5 PRO A 95 ILE A 99 5 5 HELIX 6 6 PRO A 100 LEU A 104 5 5 HELIX 7 7 PRO A 106 MET A 111 1 6 HELIX 8 8 ASP A 134 ALA A 151 1 18 HELIX 9 9 ARG A 153 GLY A 169 1 17 HELIX 10 10 ASN A 171 SER A 189 1 19 HELIX 11 11 ASN A 206 HIS A 210 5 5 HELIX 12 12 HIS A 210 LYS A 214 5 5 HELIX 13 13 SER A 217 ASP A 223 1 7 HELIX 14 14 LYS A 226 PHE A 242 1 17 HELIX 15 15 LYS A 245 ARG A 249 5 5 HELIX 16 16 ASP A 251 ARG A 263 1 13 SHEET 1 AA 2 THR A 121 SER A 122 0 SHEET 2 AA 2 PHE A 129 PHE A 130 -1 O PHE A 130 N THR A 121 SHEET 1 AB 2 VAL A 199 ASN A 200 0 SHEET 2 AB 2 VAL A 203 GLU A 204 -1 O VAL A 203 N ASN A 200 LINK OE1 GLU A 48 CA CA A1266 1555 1555 3.10 LINK OE2 GLU A 48 CA CA A1266 1555 1555 2.33 LINK OE1 GLU A 48 CA CA A1267 1555 1555 2.29 LINK OE1 GLU A 51 CA CA A1266 1555 1555 2.83 LINK OE2 GLU A 51 CA CA A1266 1555 1555 2.36 LINK OE1 GLU A 51 CA CA A1267 1555 1555 2.41 LINK OE1 GLU A 76 CA CA A1267 1555 1555 2.18 LINK OD2 ASP A 79 CA CA A1267 1555 1555 2.32 LINK O2A DUP A1265 CA CA A1266 1555 1555 2.23 LINK O1B DUP A1265 CA CA A1266 1555 1555 2.48 LINK O1G DUP A1265 CA CA A1266 1555 1555 2.41 LINK O1B DUP A1265 CA CA A1267 1555 1555 2.11 LINK CA CA A1266 O HOH A2011 1555 1555 2.37 LINK CA CA A1267 O HOH A2026 1555 1555 2.35 CISPEP 1 PHE A 130 PRO A 131 0 1.58 SITE 1 AC1 25 GLN A 21 LEU A 24 ASN A 25 ILE A 28 SITE 2 AC1 25 TRP A 41 GLU A 48 GLU A 51 LYS A 59 SITE 3 AC1 25 TRP A 60 TRP A 61 ASP A 79 HIS A 82 SITE 4 AC1 25 PHE A 83 LYS A 179 ASN A 183 ARG A 186 SITE 5 AC1 25 TYR A 191 LYS A 198 ASN A 206 CA A1266 SITE 6 AC1 25 CA A1267 HOH A2011 HOH A2026 HOH A2054 SITE 7 AC1 25 HOH A2055 SITE 1 AC2 5 GLU A 48 GLU A 51 DUP A1265 CA A1267 SITE 2 AC2 5 HOH A2011 SITE 1 AC3 7 GLU A 48 GLU A 51 GLU A 76 ASP A 79 SITE 2 AC3 7 DUP A1265 CA A1266 HOH A2026 CRYST1 86.830 86.830 145.280 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011517 0.006649 0.000000 0.00000 SCALE2 0.000000 0.013298 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006883 0.00000