HEADER CELL CYCLE 15-MAR-11 2YCH TITLE PILM-PILN TYPE IV PILUS BIOGENESIS COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: COMPETENCE PROTEIN PILM; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: COMPETENCE PROTEIN PILN; COMPND 7 CHAIN: B; COMPND 8 FRAGMENT: RESIDUES 1-15 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 262724; SOURCE 4 STRAIN: HB8; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B843(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET15B; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 13 ORGANISM_TAXID: 262724; SOURCE 14 STRAIN: HB8 KEYWDS CELL CYCLE, TYPE IV PILUS ACTIN SECRETION EXPDTA X-RAY DIFFRACTION AUTHOR V.KARUPPIAH,J.P.DERRICK REVDAT 2 12-OCT-11 2YCH 1 SOURCE JRNL REMARK DBREF REVDAT 2 2 VERSN REVDAT 1 11-MAY-11 2YCH 0 JRNL AUTH V.KARUPPIAH,J.P.DERRICK JRNL TITL STRUCTURE OF THE PILM-PILN INNER MEMBRANE TYPE IV JRNL TITL 2 PILUS BIOGENESIS COMPLEX FROM THERMUS THERMOPHILUS. JRNL TITL 3 JRNL REF J.BIOL.CHEM. V. 286 24434 2011 JRNL REFN ISSN 0021-9258 JRNL PMID 21596754 JRNL DOI 10.1074/JBC.M111.243535 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 99.91 REMARK 3 NUMBER OF REFLECTIONS : 24500 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.23947 REMARK 3 R VALUE (WORKING SET) : 0.23739 REMARK 3 FREE R VALUE : 0.27944 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.0 REMARK 3 FREE R VALUE TEST SET COUNT : 1289 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.200 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.257 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1734 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.271 REMARK 3 BIN FREE R VALUE SET COUNT : 84 REMARK 3 BIN FREE R VALUE : 0.343 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2587 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 72 REMARK 3 SOLVENT ATOMS : 84 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.7 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.861 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.64 REMARK 3 B22 (A**2) : 1.64 REMARK 3 B33 (A**2) : -3.29 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.239 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.209 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.145 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.550 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.933 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2701 ; 0.028 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3676 ; 2.341 ; 2.037 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 339 ; 7.235 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 103 ;35.012 ;23.495 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 466 ;22.650 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;20.331 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 442 ; 0.191 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1970 ; 0.013 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1719 ; 1.422 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2766 ; 2.583 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 982 ; 4.414 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 910 ; 7.414 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. OMITTED RESIDUES ARE 1-10 AT THE N-TERMINUS, REMARK 3 250-274. BETWEEN ALPHA7 AND ALPHA8, AND 376-377 AT THE REMARK 3 C-TERMINUS. REMARK 4 REMARK 4 2YCH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-MAR-11. REMARK 100 THE PDBE ID CODE IS EBI-47620. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-DEC-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9798 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27534 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.16 REMARK 200 RESOLUTION RANGE LOW (A) : 91.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.3 REMARK 200 R MERGE (I) : 0.09 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.30 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.16 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.9 REMARK 200 R MERGE FOR SHELL (I) : 0.66 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.60 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELXD-2006 REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 0.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.8 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS PH 8.0, 0.2M REMARK 280 MAGNESIUM CHLORIDE AND 20% (W/V) PEG 6000 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 183.05850 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 25.39000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 25.39000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 274.58775 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 25.39000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 25.39000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 91.52925 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 25.39000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 25.39000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 274.58775 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 25.39000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 25.39000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 91.52925 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 183.05850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 PHE A 2 REMARK 465 LYS A 3 REMARK 465 SER A 4 REMARK 465 LEU A 5 REMARK 465 SER A 6 REMARK 465 GLN A 7 REMARK 465 LEU A 8 REMARK 465 PHE A 9 REMARK 465 ARG A 10 REMARK 465 ASP A 120 REMARK 465 MSE A 250 REMARK 465 ALA A 251 REMARK 465 THR A 252 REMARK 465 LEU A 253 REMARK 465 PRO A 254 REMARK 465 THR A 255 REMARK 465 GLU A 256 REMARK 465 ASP A 257 REMARK 465 GLU A 258 REMARK 465 GLU A 259 REMARK 465 LEU A 260 REMARK 465 LEU A 261 REMARK 465 LEU A 262 REMARK 465 ASP A 263 REMARK 465 PHE A 264 REMARK 465 ASP A 265 REMARK 465 ALA A 266 REMARK 465 GLU A 267 REMARK 465 ARG A 268 REMARK 465 GLU A 269 REMARK 465 ARG A 270 REMARK 465 TYR A 271 REMARK 465 SER A 272 REMARK 465 PRO A 273 REMARK 465 GLY A 274 REMARK 465 GLU A 303 REMARK 465 GLU A 304 REMARK 465 ALA A 305 REMARK 465 LEU A 376 REMARK 465 ASP A 377 REMARK 465 LYS B 9 REMARK 465 ASN B 10 REMARK 465 LEU B 11 REMARK 465 ARG B 12 REMARK 465 ARG B 13 REMARK 465 ARG B 14 REMARK 465 VAL B 15 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 33 CG OD1 ND2 REMARK 470 TYR A 248 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 308 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 289 NH1 ARG A 292 2.17 REMARK 500 OE1 GLU A 290 NH2 ARG A 293 2.18 REMARK 500 OD1 ASN A 333 OE2 GLU A 335 2.16 REMARK 500 ND2 ASN A 338 NE2 GLN A 356 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 170 CB - CG - CD2 ANGL. DEV. = -13.0 DEGREES REMARK 500 VAL A 206 CG1 - CB - CG2 ANGL. DEV. = 9.9 DEGREES REMARK 500 ARG A 217 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 232 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 293 NE - CZ - NH1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 293 NE - CZ - NH2 ANGL. DEV. = -5.1 DEGREES REMARK 500 ARG A 299 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 LEU A 370 CB - CG - CD1 ANGL. DEV. = 12.0 DEGREES REMARK 500 ARG A 371 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 371 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 81 -167.89 -124.01 REMARK 500 PRO A 99 159.21 -43.04 REMARK 500 PRO A 116 28.15 -78.48 REMARK 500 GLU A 188 77.94 -118.22 REMARK 500 SER A 222 -175.21 -174.61 REMARK 500 ASN A 235 50.13 23.93 REMARK 500 TYR A 248 -64.20 -103.53 REMARK 500 GLU A 308 -80.29 -66.73 REMARK 500 LEU A 319 126.08 -38.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 33 PRO A 34 136.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 19 OE2 REMARK 620 2 HOH A2005 O 92.2 REMARK 620 3 HOH A2049 O 99.4 88.6 REMARK 620 4 ATP A 502 O3G 93.5 173.6 93.3 REMARK 620 5 ATP A 502 O2B 86.1 95.2 173.2 82.3 REMARK 620 6 HOH A2050 O 175.5 85.0 84.2 89.1 90.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 502 REMARK 999 REMARK 999 SEQUENCE REMARK 999 F334L DUE TO PCR ERROR DBREF 2YCH A 1 377 UNP Q5SIJ0 Q5SIJ0_THET8 1 377 DBREF 2YCH B 1 15 UNP Q5SII9 Q5SII9_THET8 1 15 SEQADV 2YCH VAL A 195 UNP Q5SIJ0 ALA 195 CONFLICT SEQADV 2YCH LEU A 334 UNP Q5SIJ0 PHE 334 CLONING ARTIFACT SEQRES 1 A 377 MSE PHE LYS SER LEU SER GLN LEU PHE ARG PRO ARG VAL SEQRES 2 A 377 GLU ALA LEU GLY LEU GLU ILE GLY ALA SER ALA LEU LYS SEQRES 3 A 377 LEU VAL GLU VAL SER GLY ASN PRO PRO ALA LEU LYS ALA SEQRES 4 A 377 LEU ALA SER ARG PRO THR PRO PRO GLY LEU LEU MSE GLU SEQRES 5 A 377 GLY MSE VAL ALA GLU PRO ALA ALA LEU ALA GLN GLU ILE SEQRES 6 A 377 LYS GLU LEU LEU LEU GLU ALA ARG THR ARG LYS ARG TYR SEQRES 7 A 377 VAL VAL THR ALA LEU SER ASN LEU ALA VAL ILE LEU ARG SEQRES 8 A 377 PRO ILE GLN VAL PRO LYS MSE PRO LEU LYS GLU MSE GLU SEQRES 9 A 377 GLU ALA VAL ARG TRP GLU ALA GLU ARG TYR ILE PRO PHE SEQRES 10 A 377 PRO ILE ASP GLU VAL VAL LEU ASP PHE ALA PRO LEU THR SEQRES 11 A 377 PRO LEU SER GLU VAL GLN GLU GLY GLU GLN VAL GLN VAL SEQRES 12 A 377 MSE VAL ALA ALA ALA ARG GLN GLU ALA VAL ALA GLY VAL SEQRES 13 A 377 LEU GLU ALA LEU ARG GLY ALA GLY LEU VAL PRO VAL VAL SEQRES 14 A 377 LEU ASP VAL LYS PRO PHE ALA GLY LEU TYR PRO LEU GLU SEQRES 15 A 377 ALA ARG LEU ALA GLU GLU PRO ASP ARG VAL PHE LEU VAL SEQRES 16 A 377 LEU ASP ILE GLY ALA GLU SER THR SER LEU VAL LEU LEU SEQRES 17 A 377 ARG GLY ASP LYS PRO LEU ALA VAL ARG VAL LEU THR LEU SEQRES 18 A 377 SER GLY LYS ASP PHE THR GLU ALA ILE ALA ARG SER PHE SEQRES 19 A 377 ASN LEU ASP LEU LEU ALA ALA GLU GLU VAL LYS ARG THR SEQRES 20 A 377 TYR GLY MSE ALA THR LEU PRO THR GLU ASP GLU GLU LEU SEQRES 21 A 377 LEU LEU ASP PHE ASP ALA GLU ARG GLU ARG TYR SER PRO SEQRES 22 A 377 GLY ARG ILE TYR ASP ALA ILE ARG PRO VAL LEU VAL GLU SEQRES 23 A 377 LEU THR GLN GLU LEU ARG ARG SER LEU GLU PHE PHE ARG SEQRES 24 A 377 ILE GLN LEU GLU GLU ALA SER PRO GLU VAL GLY TYR LEU SEQRES 25 A 377 LEU GLY GLY GLY SER LYS LEU ARG GLY LEU ALA SER LEU SEQRES 26 A 377 LEU THR ASP THR LEU GLY VAL ASN LEU GLU PRO VAL ASN SEQRES 27 A 377 PRO TRP GLU ALA VAL ALA VAL ASP PRO LYS ARG PHE GLU SEQRES 28 A 377 SER GLU GLN LEU GLN GLU ILE GLY PRO GLU PHE ALA VAL SEQRES 29 A 377 ALA LEU GLY LEU ALA LEU ARG GLY VAL GLU PRO LEU ASP SEQRES 1 B 15 MET ILE ARG LEU ASN LEU LEU PRO LYS ASN LEU ARG ARG SEQRES 2 B 15 ARG VAL MODRES 2YCH MSE A 51 MET SELENOMETHIONINE MODRES 2YCH MSE A 54 MET SELENOMETHIONINE MODRES 2YCH MSE A 98 MET SELENOMETHIONINE MODRES 2YCH MSE A 103 MET SELENOMETHIONINE MODRES 2YCH MSE A 144 MET SELENOMETHIONINE HET MSE A 51 8 HET MSE A 54 8 HET MSE A 98 8 HET MSE A 103 8 HET MSE A 144 8 HET MG A 501 1 HET ATP A 502 31 HETNAM MSE SELENOMETHIONINE HETNAM MG MAGNESIUM ION HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE FORMUL 3 MSE 5(C5 H11 N O2 SE) FORMUL 4 MG MG 2+ FORMUL 5 ATP C10 H16 N5 O13 P3 FORMUL 6 HOH *84(H2 O) HELIX 1 1 GLU A 57 ARG A 73 1 17 HELIX 2 2 SER A 84 VAL A 88 5 5 HELIX 3 3 PRO A 99 GLU A 112 1 14 HELIX 4 4 ARG A 113 ILE A 115 5 3 HELIX 5 5 PRO A 131 VAL A 135 5 5 HELIX 6 6 GLN A 150 ALA A 163 1 14 HELIX 7 7 LYS A 173 GLY A 177 1 5 HELIX 8 8 LEU A 178 PRO A 180 5 3 HELIX 9 9 LEU A 181 GLU A 187 1 7 HELIX 10 10 SER A 222 PHE A 234 1 13 HELIX 11 11 ASP A 237 TYR A 248 1 12 HELIX 12 12 ARG A 275 LEU A 302 1 28 HELIX 13 13 GLY A 314 LEU A 319 5 6 HELIX 14 14 GLY A 321 GLY A 331 1 11 HELIX 15 15 ASN A 338 VAL A 343 5 6 HELIX 16 16 GLU A 351 VAL A 373 1 23 SHEET 1 AA 5 ALA A 36 PRO A 44 0 SHEET 2 AA 5 ALA A 24 SER A 31 -1 O LEU A 25 N ARG A 43 SHEET 3 AA 5 LEU A 16 ILE A 20 -1 O GLY A 17 N VAL A 28 SHEET 4 AA 5 TYR A 78 LEU A 83 1 O TYR A 78 N LEU A 16 SHEET 5 AA 5 VAL A 166 VAL A 172 1 O VAL A 166 N VAL A 79 SHEET 1 AB 2 LEU A 50 MSE A 51 0 SHEET 2 AB 2 MSE A 54 VAL A 55 -1 O MSE A 54 N MSE A 51 SHEET 1 AC 3 ILE A 89 PRO A 96 0 SHEET 2 AC 3 GLN A 140 ARG A 149 -1 O VAL A 141 N VAL A 95 SHEET 3 AC 3 VAL A 122 PRO A 128 -1 O VAL A 123 N ALA A 148 SHEET 1 AD 5 LYS A 212 LEU A 219 0 SHEET 2 AD 5 THR A 203 ARG A 209 -1 O THR A 203 N LEU A 219 SHEET 3 AD 5 VAL A 192 ILE A 198 -1 O PHE A 193 N LEU A 208 SHEET 4 AD 5 VAL A 309 LEU A 313 1 O VAL A 309 N LEU A 194 SHEET 5 AD 5 ASN A 333 PRO A 336 1 O ASN A 333 N GLY A 310 LINK C LEU A 50 N MSE A 51 1555 1555 1.33 LINK C MSE A 51 N GLU A 52 1555 1555 1.34 LINK C GLY A 53 N MSE A 54 1555 1555 1.33 LINK C MSE A 54 N VAL A 55 1555 1555 1.32 LINK C LYS A 97 N MSE A 98 1555 1555 1.32 LINK C MSE A 98 N PRO A 99 1555 1555 1.36 LINK C GLU A 102 N MSE A 103 1555 1555 1.35 LINK C MSE A 103 N GLU A 104 1555 1555 1.33 LINK C VAL A 143 N MSE A 144 1555 1555 1.36 LINK C MSE A 144 N VAL A 145 1555 1555 1.31 LINK MG MG A 501 O HOH A2005 1555 1555 2.12 LINK MG MG A 501 O HOH A2049 1555 1555 2.13 LINK MG MG A 501 O3G ATP A 502 1555 1555 2.11 LINK MG MG A 501 O2B ATP A 502 1555 1555 2.19 LINK MG MG A 501 O HOH A2050 1555 1555 2.26 LINK MG MG A 501 OE2 GLU A 19 1555 1555 2.08 CISPEP 1 GLU A 374 PRO A 375 0 8.36 SITE 1 AC1 5 GLU A 19 ATP A 502 HOH A2005 HOH A2049 SITE 2 AC1 5 HOH A2050 SITE 1 AC2 28 GLU A 19 GLY A 21 ALA A 22 SER A 23 SITE 2 AC2 28 ALA A 24 LYS A 26 LYS A 173 GLY A 199 SITE 3 AC2 28 ALA A 200 GLU A 201 SER A 202 GLU A 242 SITE 4 AC2 28 LYS A 245 ARG A 246 GLY A 314 GLY A 315 SITE 5 AC2 28 GLY A 316 LYS A 318 LEU A 319 GLU A 361 SITE 6 AC2 28 MG A 501 HOH A2049 HOH A2050 HOH A2052 SITE 7 AC2 28 HOH A2062 HOH A2079 HOH A2080 HOH A2081 CRYST1 50.780 50.780 366.117 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019693 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019693 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002731 0.00000