HEADER TRANSFERASE 16-MAR-11 2YCL TITLE COMPLETE STRUCTURE OF THE CORRINOID,IRON-SULFUR PROTEIN INCLUDING THE TITLE 2 N-TERMINAL DOMAIN WITH A 4FE-4S CLUSTER COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARBON MONOXIDE DEHYDROGENASE CORRINOID/IRON-SULFUR COMPND 3 PROTEIN, GAMMA SUBUNIT; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CO DEHYDROGENASE/ACETYL-COA SYNTHASE, IRON-SULFUR PROTEIN; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CARBOXYDOTHERMUS HYDROGENOFORMANS; SOURCE 3 ORGANISM_TAXID: 246194; SOURCE 4 STRAIN: Z-2901; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: CARBOXYDOTHERMUS HYDROGENOFORMANS; SOURCE 12 ORGANISM_TAXID: 246194; SOURCE 13 STRAIN: Z-2901; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_VECTOR: PET28 KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.GOETZL,J.H.JEOUNG,S.E.HENNIG,H.DOBBEK REVDAT 4 20-DEC-23 2YCL 1 REMARK LINK REVDAT 3 24-OCT-12 2YCL 1 FORMUL REVDAT 2 03-AUG-11 2YCL 1 JRNL REMARK MASTER VERSN REVDAT 1 08-JUN-11 2YCL 0 JRNL AUTH S.GOETZL,J.H.JEOUNG,S.E.HENNIG,H.DOBBEK JRNL TITL STRUCTURAL BASIS FOR ELECTRON AND METHYL-GROUP TRANSFER IN A JRNL TITL 2 METHYLTRANSFERASE SYSTEM OPERATING IN THE REDUCTIVE JRNL TITL 3 ACETYL-COA PATHWAY JRNL REF J.MOL.BIOL. V. 411 96 2011 JRNL REFN ISSN 0022-2836 JRNL PMID 21640123 JRNL DOI 10.1016/J.JMB.2011.05.025 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.75 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 48268 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2415 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.7505 - 5.0089 0.99 2822 150 0.1623 0.1861 REMARK 3 2 5.0089 - 3.9777 1.00 2735 143 0.1305 0.1737 REMARK 3 3 3.9777 - 3.4755 0.99 2736 144 0.1543 0.2061 REMARK 3 4 3.4755 - 3.1580 1.00 2691 142 0.1690 0.2441 REMARK 3 5 3.1580 - 2.9318 1.00 2723 143 0.1713 0.2277 REMARK 3 6 2.9318 - 2.7590 1.00 2686 142 0.1786 0.2287 REMARK 3 7 2.7590 - 2.6209 1.00 2696 142 0.1880 0.2535 REMARK 3 8 2.6209 - 2.5068 1.00 2700 142 0.1980 0.2845 REMARK 3 9 2.5068 - 2.4103 1.00 2671 140 0.2120 0.3226 REMARK 3 10 2.4103 - 2.3272 1.00 2701 143 0.2250 0.2872 REMARK 3 11 2.3272 - 2.2544 0.99 2671 140 0.2648 0.3585 REMARK 3 12 2.2544 - 2.1900 0.99 2623 138 0.2647 0.3124 REMARK 3 13 2.1900 - 2.1324 1.00 2701 142 0.2382 0.3240 REMARK 3 14 2.1324 - 2.0803 1.00 2659 140 0.2527 0.3047 REMARK 3 15 2.0803 - 2.0331 1.00 2688 142 0.2676 0.3524 REMARK 3 16 2.0331 - 1.9898 1.00 2669 141 0.2638 0.3555 REMARK 3 17 1.9898 - 1.9500 1.00 2681 141 0.2854 0.3623 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.65 REMARK 3 K_SOL : 0.43 REMARK 3 B_SOL : 50.30 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.630 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.68 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.16420 REMARK 3 B22 (A**2) : 1.27010 REMARK 3 B33 (A**2) : -6.43440 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -4.14540 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 6104 REMARK 3 ANGLE : 1.647 8353 REMARK 3 CHIRALITY : 0.092 966 REMARK 3 PLANARITY : 0.011 1071 REMARK 3 DIHEDRAL : 13.644 2323 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YCL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1290047722. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48286 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.3600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.53000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.550 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2H9A REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 86.10950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.73800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 86.10950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 21.73800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2102 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 445 REMARK 465 MET B 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 444 CA C O CB CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N GLY A 240 O HOH A 2340 1.97 REMARK 500 O ILE A 237 O HOH A 2340 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 18 -3.52 69.27 REMARK 500 LYS A 86 157.87 179.65 REMARK 500 GLN A 233 62.03 61.79 REMARK 500 TYR A 286 -3.14 69.57 REMARK 500 ASN A 329 71.83 40.47 REMARK 500 ASN A 329 70.39 42.09 REMARK 500 TRP A 443 -56.08 -120.69 REMARK 500 PHE B 36 -2.76 69.29 REMARK 500 TYR B 162 -59.04 -135.52 REMARK 500 LEU B 209 71.02 59.48 REMARK 500 ARG B 293 -57.63 -127.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LYS A 285 -10.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2025 DISTANCE = 7.08 ANGSTROMS REMARK 525 HOH A2136 DISTANCE = 6.25 ANGSTROMS REMARK 525 HOH B2032 DISTANCE = 5.83 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A1443 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 17 SG REMARK 620 2 SF4 A1443 S1 103.8 REMARK 620 3 SF4 A1443 S2 105.0 102.3 REMARK 620 4 SF4 A1443 S4 127.3 108.1 107.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A1443 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 20 SG REMARK 620 2 SF4 A1443 S2 103.3 REMARK 620 3 SF4 A1443 S3 121.3 99.4 REMARK 620 4 SF4 A1443 S4 115.9 106.8 107.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A1443 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 25 SG REMARK 620 2 SF4 A1443 S1 107.2 REMARK 620 3 SF4 A1443 S3 116.4 106.6 REMARK 620 4 SF4 A1443 S4 112.1 106.7 107.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A1443 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 42 SG REMARK 620 2 SF4 A1443 S1 128.6 REMARK 620 3 SF4 A1443 S2 116.9 100.6 REMARK 620 4 SF4 A1443 S3 104.6 101.4 100.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 B12 A1442 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2506 O REMARK 620 2 B12 A1442 N21 101.3 REMARK 620 3 B12 A1442 N22 93.9 84.1 REMARK 620 4 B12 A1442 N23 79.4 177.2 98.5 REMARK 620 5 B12 A1442 N24 77.9 86.1 165.8 91.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE B12 A 1442 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SF4 A 1443 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2YCK RELATED DB: PDB REMARK 900 METHYLTRANSFERASE BOUND WITH TETRAHYDROFOLATE REMARK 900 RELATED ID: 2YCI RELATED DB: PDB REMARK 900 METHYLTRANSFERASE NATIVE REMARK 900 RELATED ID: 2YCJ RELATED DB: PDB REMARK 900 METHYLTRANSFERASE BOUND WITH METHYLTETRAHYDROFOLATE DBREF 2YCL A 1 445 UNP Q3ACS3 Q3ACS3_CARHZ 1 445 DBREF 2YCL B 1 310 UNP Q3ACS0 Q3ACS0_CARHZ 1 310 SEQRES 1 A 445 MET GLY LEU THR GLY LEU GLU ILE TYR LYS HIS LEU PRO SEQRES 2 A 445 LYS LYS ASN CYS LYS GLU CYS GLY GLN PRO THR CYS LEU SEQRES 3 A 445 ALA PHE ALA MET GLN ILE ALA ALA GLY LYS ALA GLY LEU SEQRES 4 A 445 ASP ALA CYS PRO TYR VAL SER ASP GLU ALA LYS GLU LEU SEQRES 5 A 445 LEU GLU SER ALA SER ALA PRO PRO VAL ALA LEU ILE LYS SEQRES 6 A 445 VAL GLY LYS GLY GLU LYS VAL LEU GLU ILE GLY HIS GLU SEQRES 7 A 445 THR VAL LEU PHE ARG HIS ASP LYS ARG PHE GLU HIS PRO SEQRES 8 A 445 CYS GLY LEU ALA ILE LEU VAL GLU ASP THR LEU SER GLU SEQRES 9 A 445 GLY GLU ILE LYS GLU ARG VAL GLU LYS ILE ASN LYS LEU SEQRES 10 A 445 VAL PHE ASP ARG VAL GLY GLN MET HIS SER VAL ASN LEU SEQRES 11 A 445 VAL ALA LEU LYS GLY SER SER GLN ASP ALA ALA THR PHE SEQRES 12 A 445 ALA LYS ALA VAL ALA THR ALA ARG GLU VAL THR ASP LEU SEQRES 13 A 445 PRO PHE ILE LEU ILE GLY THR PRO GLU GLN LEU ALA ALA SEQRES 14 A 445 ALA LEU GLU THR GLU GLY ALA ASN ASN PRO LEU LEU TYR SEQRES 15 A 445 ALA ALA THR ALA ASP ASN TYR GLU GLN MET VAL GLU LEU SEQRES 16 A 445 ALA LYS LYS TYR ASN VAL PRO LEU THR VAL SER ALA LYS SEQRES 17 A 445 GLY LEU ASP ALA LEU ALA GLU LEU VAL GLN LYS ILE THR SEQRES 18 A 445 ALA LEU GLY TYR LYS ASN LEU ILE LEU ASP PRO GLN PRO SEQRES 19 A 445 GLU ASN ILE SER GLU GLY LEU PHE TYR GLN THR GLN ILE SEQRES 20 A 445 ARG ARG LEU ALA ILE LYS LYS LEU PHE ARG PRO PHE GLY SEQRES 21 A 445 TYR PRO THR ILE ALA PHE ALA LEU ASP GLU ASN PRO TYR SEQRES 22 A 445 GLN ALA VAL MET GLU ALA SER VAL TYR ILE ALA LYS TYR SEQRES 23 A 445 ALA GLY ILE ILE VAL LEU ASN THR VAL GLU PRO ALA ASP SEQRES 24 A 445 ILE LEU PRO LEU ILE THR LEU ARG LEU ASN ILE TYR THR SEQRES 25 A 445 ASP PRO GLN LYS PRO ILE ALA VAL GLU PRO LYS VAL TYR SEQRES 26 A 445 GLU ILE LEU ASN PRO GLY PRO ASP ALA PRO VAL PHE ILE SEQRES 27 A 445 THR THR ASN PHE SER LEU THR TYR PHE CYS VAL ALA GLY SEQRES 28 A 445 ASP VAL GLU GLY ALA ARG ILE PRO ALA TYR ILE LEU PRO SEQRES 29 A 445 VAL ASP THR ASP GLY THR SER VAL LEU THR ALA TRP ALA SEQRES 30 A 445 ALA GLY LYS PHE THR PRO GLU LYS ILE ALA GLN PHE LEU SEQRES 31 A 445 LYS GLU SER GLY ILE ALA GLU LYS VAL ASN HIS ARG LYS SEQRES 32 A 445 ALA ILE LEU PRO GLY GLY VAL ALA VAL LEU SER GLY LYS SEQRES 33 A 445 LEU GLN GLU LEU SER GLY TRP GLU ILE LEU VAL GLY PRO SEQRES 34 A 445 ARG GLU SER SER GLY ILE ASN SER PHE ILE LYS GLN ARG SEQRES 35 A 445 TRP ASN VAL SEQRES 1 B 310 MET ALA VAL GLU VAL LEU LYS GLU LYS TRP ASN SER LYS SEQRES 2 B 310 VAL VAL GLU VAL THR LEU GLY THR GLY ASP LYS THR VAL SEQRES 3 B 310 THR LEU GLY GLY ASP SER THR LEU PRO PHE LEU THR PHE SEQRES 4 B 310 GLU GLY GLU MET PRO ASN PRO PRO ARG PHE ALA LEU GLU SEQRES 5 B 310 VAL PHE ASP THR PRO PRO THR ASP TRP PRO ASP ILE LEU SEQRES 6 B 310 VAL GLU PRO PHE LYS ASP VAL ILE ASN ASP PRO VAL ALA SEQRES 7 B 310 TRP ALA LYS LYS CYS VAL GLU TYR GLY ALA ASP ILE VAL SEQRES 8 B 310 ALA LEU ARG LEU VAL SER ALA HIS PRO ASP GLY GLN ASN SEQRES 9 B 310 ARG SER GLY ALA GLU LEU ALA GLU VAL CYS LYS ALA VAL SEQRES 10 B 310 ALA ASP ALA ILE ASP VAL PRO LEU MET ILE ILE GLY CYS SEQRES 11 B 310 GLY VAL GLU GLU LYS ASP ALA GLU ILE PHE PRO VAL ILE SEQRES 12 B 310 GLY GLU ALA LEU SER GLY ARG ASN CYS LEU LEU SER SER SEQRES 13 B 310 ALA THR LYS ASP ASN TYR LYS PRO ILE VAL ALA THR CYS SEQRES 14 B 310 MET VAL HIS GLY HIS SER VAL VAL ALA SER ALA PRO LEU SEQRES 15 B 310 ASP ILE ASN LEU SER LYS GLN LEU ASN ILE MET ILE MET SEQRES 16 B 310 GLU MET ASN LEU ALA PRO ASN ARG ILE ILE MET ASP PRO SEQRES 17 B 310 LEU ILE GLY ALA LEU GLY TYR GLY ILE GLU TYR SER TYR SEQRES 18 B 310 SER ILE ILE GLU ARG MET ARG LEU GLY ALA LEU THR GLY SEQRES 19 B 310 ASP LYS ILE LEU ALA MET PRO VAL VAL CYS PHE ILE GLY SEQRES 20 B 310 GLN GLU ALA TRP LYS ALA LYS GLU ALA LYS ASP PRO GLU SEQRES 21 B 310 VAL ALA GLU TRP GLY ASP TYR ALA LEU ARG ALA ILE HIS SEQRES 22 B 310 TRP GLU THR VAL THR THR VAL ALA LEU ILE GLN ALA GLY SEQRES 23 B 310 GLY HIS LEU PHE VAL MET ARG HIS PRO LYS SER LEU ALA SEQRES 24 B 310 GLU VAL LYS GLU HIS LEU LYS ARG ILE LEU LYS HET B12 A1442 91 HET SF4 A1443 8 HETNAM B12 COBALAMIN HETNAM SF4 IRON/SULFUR CLUSTER FORMUL 3 B12 C62 H89 CO N13 O14 P 2+ FORMUL 4 SF4 FE4 S4 FORMUL 5 HOH *795(H2 O) HELIX 1 1 THR A 4 LYS A 10 1 7 HELIX 2 2 THR A 24 ALA A 34 1 11 HELIX 3 3 GLY A 38 CYS A 42 5 5 HELIX 4 4 SER A 46 SER A 55 1 10 HELIX 5 5 LYS A 68 VAL A 72 5 5 HELIX 6 6 SER A 103 LYS A 116 1 14 HELIX 7 7 ASP A 139 VAL A 153 1 15 HELIX 8 8 THR A 163 GLY A 175 1 13 HELIX 9 9 ALA A 176 ASN A 178 5 3 HELIX 10 10 ASN A 188 ASN A 200 1 13 HELIX 11 11 LYS A 208 LEU A 223 1 16 HELIX 12 12 ASN A 236 LYS A 254 1 19 HELIX 13 13 PHE A 256 GLY A 260 5 5 HELIX 14 14 ASN A 271 LYS A 285 1 15 HELIX 15 15 GLU A 296 TYR A 311 1 16 HELIX 16 16 PHE A 342 ALA A 356 1 15 HELIX 17 17 SER A 371 ALA A 378 1 8 HELIX 18 18 THR A 382 SER A 393 1 12 HELIX 19 19 GLY A 394 VAL A 399 1 6 HELIX 20 20 PRO A 407 VAL A 412 5 6 HELIX 21 21 LEU A 413 GLY A 422 1 10 HELIX 22 22 GLU A 431 SER A 433 5 3 HELIX 23 23 GLY A 434 TRP A 443 1 10 HELIX 24 24 THR B 21 THR B 25 5 5 HELIX 25 25 PRO B 62 GLU B 67 1 6 HELIX 26 26 PRO B 68 LYS B 70 5 3 HELIX 27 27 ASP B 75 TYR B 86 1 12 HELIX 28 28 VAL B 96 HIS B 99 5 4 HELIX 29 29 SER B 106 ILE B 121 1 16 HELIX 30 30 VAL B 132 LEU B 147 1 16 HELIX 31 31 TYR B 162 GLY B 173 1 12 HELIX 32 32 ASP B 183 GLU B 196 1 14 HELIX 33 33 ALA B 200 ASN B 202 5 3 HELIX 34 34 GLY B 216 THR B 233 1 18 HELIX 35 35 ASP B 235 ALA B 239 5 5 HELIX 36 36 PHE B 245 TRP B 251 1 7 HELIX 37 37 ALA B 253 ASP B 258 1 6 HELIX 38 38 VAL B 261 GLY B 265 5 5 HELIX 39 39 ASP B 266 ALA B 285 1 20 HELIX 40 40 HIS B 294 LEU B 309 1 16 SHEET 1 AA 2 ILE A 64 VAL A 66 0 SHEET 2 AA 2 LEU A 73 ILE A 75 -1 O LEU A 73 N VAL A 66 SHEET 1 AB 8 LEU A 228 ASP A 231 0 SHEET 2 AB 8 LEU A 203 SER A 206 1 O LEU A 203 N ILE A 229 SHEET 3 AB 8 LEU A 180 ALA A 184 1 O LEU A 181 N THR A 204 SHEET 4 AB 8 PHE A 158 ILE A 161 1 O PHE A 158 N LEU A 180 SHEET 5 AB 8 LEU A 130 LYS A 134 1 O VAL A 131 N ILE A 159 SHEET 6 AB 8 GLY A 93 GLU A 99 1 O LEU A 94 N LEU A 130 SHEET 7 AB 8 ILE A 289 LEU A 292 1 O ILE A 290 N ALA A 95 SHEET 8 AB 8 ILE A 264 ALA A 267 1 O ALA A 265 N VAL A 291 SHEET 1 AC 2 VAL A 118 ARG A 121 0 SHEET 2 AC 2 GLN A 124 SER A 127 -1 O GLN A 124 N ARG A 121 SHEET 1 AD 3 TYR A 325 ILE A 327 0 SHEET 2 AD 3 ALA A 360 VAL A 365 -1 O ALA A 360 N ILE A 327 SHEET 3 AD 3 VAL A 336 THR A 340 1 O PHE A 337 N LEU A 363 SHEET 1 AE 2 LYS A 403 LEU A 406 0 SHEET 2 AE 2 GLU A 424 VAL A 427 1 O GLU A 424 N ALA A 404 SHEET 1 BA 2 GLU B 16 LEU B 19 0 SHEET 2 BA 2 VAL B 26 GLY B 29 -1 O VAL B 26 N LEU B 19 SHEET 1 BB 8 ILE B 204 ASP B 207 0 SHEET 2 BB 8 SER B 175 SER B 179 1 O VAL B 176 N ILE B 205 SHEET 3 BB 8 LEU B 153 ALA B 157 1 O LEU B 154 N VAL B 177 SHEET 4 BB 8 LEU B 125 ILE B 128 1 O LEU B 125 N LEU B 153 SHEET 5 BB 8 ILE B 90 ARG B 94 1 O VAL B 91 N MET B 126 SHEET 6 BB 8 ARG B 48 PHE B 54 1 O LEU B 51 N ALA B 92 SHEET 7 BB 8 LEU B 289 MET B 292 1 O PHE B 290 N ALA B 50 SHEET 8 BB 8 VAL B 243 CYS B 244 1 O CYS B 244 N VAL B 291 LINK SG CYS A 17 FE3 SF4 A1443 1555 1555 2.72 LINK SG CYS A 20 FE1 SF4 A1443 1555 1555 2.51 LINK SG CYS A 25 FE2 SF4 A1443 1555 1555 2.45 LINK SG CYS A 42 FE4 SF4 A1443 1555 1555 2.28 LINK CO B12 A1442 O HOH A2506 1555 1555 2.62 CISPEP 1 TYR A 182 ALA A 183 0 -2.03 CISPEP 2 SER B 155 SER B 156 0 1.71 SITE 1 AC1 35 PHE A 337 ILE A 338 THR A 339 PHE A 342 SITE 2 AC1 35 THR A 345 CYS A 348 VAL A 349 GLY A 369 SITE 3 AC1 35 THR A 370 SER A 371 VAL A 372 LEU A 373 SITE 4 AC1 35 THR A 374 ILE A 405 PRO A 407 PRO A 429 SITE 5 AC1 35 ARG A 430 SER A 432 HOH A2482 HOH A2496 SITE 6 AC1 35 HOH A2498 HOH A2499 HOH A2503 HOH A2505 SITE 7 AC1 35 HOH A2506 PRO B 181 LEU B 182 LEU B 209 SITE 8 AC1 35 ILE B 210 GLY B 211 TYR B 215 GLU B 249 SITE 9 AC1 35 HOH B2176 HOH B2180 HOH B2210 SITE 1 AC2 9 PRO A 13 LYS A 15 ASN A 16 CYS A 17 SITE 2 AC2 9 LYS A 18 CYS A 20 CYS A 25 PHE A 28 SITE 3 AC2 9 CYS A 42 CRYST1 172.219 43.476 101.855 90.00 119.39 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005807 0.000000 0.003270 0.00000 SCALE2 0.000000 0.023001 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011268 0.00000