HEADER HYDROLASE 17-MAR-11 2YD7 TITLE CRYSTAL STRUCTURE OF THE N-TERMINAL IG1-2 MODULE OF HUMAN RECEPTOR TITLE 2 PROTEIN TYROSINE PHOSPHATASE DELTA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PTPRD PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: IG1-2, RESIDUES 21-220; COMPND 5 SYNONYM: RPTPD, RECEPTOR PROTEIN TYROSINE PHOSPHATASE DELTA; COMPND 6 EC: 3.1.3.48; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293T; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PHLSEC KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.H.COLES,Y.SHEN,A.P.TENNEY,C.SIEBOLD,G.C.SUTTON,W.LU,J.T.GALLAGHER, AUTHOR 2 E.Y.JONES,J.G.FLANAGAN,A.R.ARICESCU REVDAT 4 23-OCT-24 2YD7 1 REMARK REVDAT 3 20-DEC-23 2YD7 1 REMARK REVDAT 2 04-MAY-11 2YD7 1 REVDAT JRNL REMARK REVDAT 1 13-APR-11 2YD7 0 JRNL AUTH C.H.COLES,Y.SHEN,A.P.TENNEY,C.SIEBOLD,G.C.SUTTON,W.LU, JRNL AUTH 2 J.T.GALLAGHER,E.Y.JONES,J.G.FLANAGAN,A.R.ARICESCU JRNL TITL PROTEOGLYCAN-SPECIFIC MOLECULAR SWITCH FOR RPTP SIGMA JRNL TITL 2 CLUSTERING AND NEURONAL EXTENSION. JRNL REF SCIENCE V. 332 484 2011 JRNL REFN ISSN 0036-8075 JRNL PMID 21454754 JRNL DOI 10.1126/SCIENCE.1200840 REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0077 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 85.61 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 29087 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1546 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.98 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.03 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2002 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.2990 REMARK 3 BIN FREE R VALUE SET COUNT : 111 REMARK 3 BIN FREE R VALUE : 0.3040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3026 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.71 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.74000 REMARK 3 B22 (A**2) : 2.24000 REMARK 3 B33 (A**2) : -0.53000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.05000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.198 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.168 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.133 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.417 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3158 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2226 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4299 ; 1.423 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5408 ; 0.752 ; 3.003 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 406 ; 6.135 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 146 ;34.011 ;23.699 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 542 ;14.439 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;13.647 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 481 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3522 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 623 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 21 A 119 REMARK 3 ORIGIN FOR THE GROUP (A): 60.3736 -6.0618 22.1784 REMARK 3 T TENSOR REMARK 3 T11: 0.0821 T22: 0.0489 REMARK 3 T33: 0.0366 T12: 0.0514 REMARK 3 T13: 0.0133 T23: -0.0080 REMARK 3 L TENSOR REMARK 3 L11: 8.0432 L22: 1.6009 REMARK 3 L33: 6.2510 L12: 0.8119 REMARK 3 L13: -2.4063 L23: 0.1453 REMARK 3 S TENSOR REMARK 3 S11: -0.0368 S12: 0.2084 S13: -0.4070 REMARK 3 S21: -0.0110 S22: 0.0314 S23: 0.0321 REMARK 3 S31: 0.3995 S32: 0.3235 S33: 0.0054 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 120 A 220 REMARK 3 ORIGIN FOR THE GROUP (A): 42.2990 6.2756 22.6002 REMARK 3 T TENSOR REMARK 3 T11: 0.0816 T22: 0.0654 REMARK 3 T33: 0.1699 T12: 0.0229 REMARK 3 T13: -0.0273 T23: -0.0075 REMARK 3 L TENSOR REMARK 3 L11: 5.8316 L22: 2.0222 REMARK 3 L33: 7.4343 L12: -0.1327 REMARK 3 L13: 2.4524 L23: -0.0043 REMARK 3 S TENSOR REMARK 3 S11: -0.1831 S12: 0.0655 S13: 0.6135 REMARK 3 S21: -0.1583 S22: -0.1300 S23: 0.1694 REMARK 3 S31: -0.5597 S32: -0.4655 S33: 0.3131 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 21 B 119 REMARK 3 ORIGIN FOR THE GROUP (A): 85.6062 -5.6559 19.4762 REMARK 3 T TENSOR REMARK 3 T11: 0.0897 T22: 0.0380 REMARK 3 T33: 0.1150 T12: -0.0093 REMARK 3 T13: 0.0084 T23: 0.0378 REMARK 3 L TENSOR REMARK 3 L11: 10.2696 L22: 0.9567 REMARK 3 L33: 5.8835 L12: -0.7263 REMARK 3 L13: -3.0938 L23: 0.2118 REMARK 3 S TENSOR REMARK 3 S11: -0.0139 S12: -0.0706 S13: -0.5764 REMARK 3 S21: 0.0623 S22: -0.0576 S23: -0.2026 REMARK 3 S31: 0.3319 S32: -0.3468 S33: 0.0715 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 120 B 220 REMARK 3 ORIGIN FOR THE GROUP (A): 104.1468 6.0622 18.6971 REMARK 3 T TENSOR REMARK 3 T11: 0.0913 T22: 0.0863 REMARK 3 T33: 0.2873 T12: 0.0058 REMARK 3 T13: -0.0391 T23: 0.0408 REMARK 3 L TENSOR REMARK 3 L11: 7.7069 L22: 2.0326 REMARK 3 L33: 5.9257 L12: 1.8975 REMARK 3 L13: 2.5438 L23: 1.1423 REMARK 3 S TENSOR REMARK 3 S11: -0.2190 S12: -0.0096 S13: 0.8842 REMARK 3 S21: 0.0348 S22: -0.0226 S23: -0.0387 REMARK 3 S31: -0.5122 S32: 0.3634 S33: 0.2417 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. CLEAR ELECTRON DENSITY IS NOT VISIBLE FOR AMINO ACID REMARK 3 RESIDUES 170-172 CHAIN A AND 169-173 CHAIN B. THESE RESIDUES ARE REMARK 3 NOT INCLUDED IN THIS CRYSTAL STRUCTURE. ARG 220 SIDECHAINS ARE REMARK 3 DISORDERED AND THEREFORE NOT INCLUDED IN THE MODEL. REMARK 4 REMARK 4 2YD7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1290047748. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30633 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.60000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2YD4 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% W/V PEG 3350, 0.2M AMMONIUM DI REMARK 280 -HYDROGEN PHOSPHATE . REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 80.57850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 15.86200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 80.57850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 15.86200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 18 REMARK 465 THR A 19 REMARK 465 GLY A 20 REMARK 465 ASN A 170 REMARK 465 ASN A 171 REMARK 465 ASN A 172 REMARK 465 GLY A 221 REMARK 465 THR A 222 REMARK 465 LYS A 223 REMARK 465 HIS A 224 REMARK 465 HIS A 225 REMARK 465 HIS A 226 REMARK 465 HIS A 227 REMARK 465 HIS A 228 REMARK 465 HIS A 229 REMARK 465 GLU B 18 REMARK 465 THR B 19 REMARK 465 GLY B 20 REMARK 465 SER B 169 REMARK 465 ASN B 170 REMARK 465 ASN B 171 REMARK 465 ASN B 172 REMARK 465 GLY B 173 REMARK 465 GLY B 221 REMARK 465 THR B 222 REMARK 465 LYS B 223 REMARK 465 HIS B 224 REMARK 465 HIS B 225 REMARK 465 HIS B 226 REMARK 465 HIS B 227 REMARK 465 HIS B 228 REMARK 465 HIS B 229 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 220 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 220 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 60 39.46 35.33 REMARK 500 SER A 65 74.89 -160.44 REMARK 500 THR A 140 -2.35 75.88 REMARK 500 GLU A 181 -117.21 38.43 REMARK 500 LYS B 60 44.23 38.30 REMARK 500 SER B 65 87.27 -157.24 REMARK 500 THR B 140 -8.22 76.60 REMARK 500 SER B 180 115.39 -163.56 REMARK 500 GLU B 181 -134.65 53.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 1221 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 1222 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 1221 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2YD6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE N-TERMINAL IG1-2 MODULE OF HUMAN RECEPTOR REMARK 900 PROTEIN TYROSINE PHOSPHATASE DELTA REMARK 900 RELATED ID: 2YD1 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE N-TERMINAL IG1-2 MODULE OF DROSOPHILA REMARK 900 RECEPTOR PROTEIN TYROSINE PHOSPHATASE DLAR REMARK 900 RELATED ID: 2YD8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE N-TERMINAL IG1-2 MODULE OF HUMAN RECEPTOR REMARK 900 PROTEIN TYROSINE PHOSPHATASE LAR IN COMPLEX WITH SUCROSE REMARK 900 OCTASULPHATE REMARK 900 RELATED ID: 2YD5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE N-TERMINAL IG1-2 MODULE OF HUMAN RECEPTOR REMARK 900 PROTEIN TYROSINE PHOSPHATASE LAR REMARK 900 RELATED ID: 2YD2 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE N-TERMINAL IG1-2 MODULE OF HUMAN RECEPTOR REMARK 900 PROTEIN TYROSINE PHOSPHATASE SIGMA REMARK 900 RELATED ID: 2YD4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE N-TERMINAL IG1-2 MODULE OF CHICKEN REMARK 900 RECEPTOR PROTEIN TYROSINE PHOSPHATASE SIGMA REMARK 900 RELATED ID: 2YD9 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE N-TERMINAL IG1-3 MODULE OF HUMAN RECEPTOR REMARK 900 PROTEIN TYROSINE PHOSPHATASE SIGMA REMARK 900 RELATED ID: 2YD3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE N-TERMINAL IG1-2 MODULE OF HUMAN RECEPTOR REMARK 900 PROTEIN TYROSINE PHOSPHATASE SIGMA REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE N-TERMINAL THREE AMINO ACID RESIDUES (ETG) AND THE C- REMARK 999 TERMINAL NINE AMINO ACID RESIDUES (GTKHHHHHH) DERIVE FROM REMARK 999 THE PHLSEC VECTOR. DBREF 2YD7 A 21 220 UNP Q3KPJ2 Q3KPJ2_HUMAN 21 220 DBREF 2YD7 B 21 220 UNP Q3KPJ2 Q3KPJ2_HUMAN 21 220 SEQADV 2YD7 GLU A 18 UNP Q3KPJ2 EXPRESSION TAG SEQADV 2YD7 THR A 19 UNP Q3KPJ2 EXPRESSION TAG SEQADV 2YD7 GLY A 20 UNP Q3KPJ2 EXPRESSION TAG SEQADV 2YD7 GLY A 221 UNP Q3KPJ2 EXPRESSION TAG SEQADV 2YD7 THR A 222 UNP Q3KPJ2 EXPRESSION TAG SEQADV 2YD7 LYS A 223 UNP Q3KPJ2 EXPRESSION TAG SEQADV 2YD7 HIS A 224 UNP Q3KPJ2 EXPRESSION TAG SEQADV 2YD7 HIS A 225 UNP Q3KPJ2 EXPRESSION TAG SEQADV 2YD7 HIS A 226 UNP Q3KPJ2 EXPRESSION TAG SEQADV 2YD7 HIS A 227 UNP Q3KPJ2 EXPRESSION TAG SEQADV 2YD7 HIS A 228 UNP Q3KPJ2 EXPRESSION TAG SEQADV 2YD7 HIS A 229 UNP Q3KPJ2 EXPRESSION TAG SEQADV 2YD7 GLU B 18 UNP Q3KPJ2 EXPRESSION TAG SEQADV 2YD7 THR B 19 UNP Q3KPJ2 EXPRESSION TAG SEQADV 2YD7 GLY B 20 UNP Q3KPJ2 EXPRESSION TAG SEQADV 2YD7 GLY B 221 UNP Q3KPJ2 EXPRESSION TAG SEQADV 2YD7 THR B 222 UNP Q3KPJ2 EXPRESSION TAG SEQADV 2YD7 LYS B 223 UNP Q3KPJ2 EXPRESSION TAG SEQADV 2YD7 HIS B 224 UNP Q3KPJ2 EXPRESSION TAG SEQADV 2YD7 HIS B 225 UNP Q3KPJ2 EXPRESSION TAG SEQADV 2YD7 HIS B 226 UNP Q3KPJ2 EXPRESSION TAG SEQADV 2YD7 HIS B 227 UNP Q3KPJ2 EXPRESSION TAG SEQADV 2YD7 HIS B 228 UNP Q3KPJ2 EXPRESSION TAG SEQADV 2YD7 HIS B 229 UNP Q3KPJ2 EXPRESSION TAG SEQRES 1 A 212 GLU THR GLY GLU THR PRO PRO ARG PHE THR ARG THR PRO SEQRES 2 A 212 VAL ASP GLN THR GLY VAL SER GLY GLY VAL ALA SER PHE SEQRES 3 A 212 ILE CYS GLN ALA THR GLY ASP PRO ARG PRO LYS ILE VAL SEQRES 4 A 212 TRP ASN LYS LYS GLY LYS LYS VAL SER ASN GLN ARG PHE SEQRES 5 A 212 GLU VAL ILE GLU PHE ASP ASP GLY SER GLY SER VAL LEU SEQRES 6 A 212 ARG ILE GLN PRO LEU ARG THR PRO ARG ASP GLU ALA ILE SEQRES 7 A 212 TYR GLU CYS VAL ALA SER ASN ASN VAL GLY GLU ILE SER SEQRES 8 A 212 VAL SER THR ARG LEU THR VAL LEU ARG GLU ASP GLN ILE SEQRES 9 A 212 PRO ARG GLY PHE PRO THR ILE ASP MET GLY PRO GLN LEU SEQRES 10 A 212 LYS VAL VAL GLU ARG THR ARG THR ALA THR MET LEU CYS SEQRES 11 A 212 ALA ALA SER GLY ASN PRO ASP PRO GLU ILE THR TRP PHE SEQRES 12 A 212 LYS ASP PHE LEU PRO VAL ASP THR SER ASN ASN ASN GLY SEQRES 13 A 212 ARG ILE LYS GLN LEU ARG SER GLU SER ILE GLY ALA LEU SEQRES 14 A 212 GLN ILE GLU GLN SER GLU GLU SER ASP GLN GLY LYS TYR SEQRES 15 A 212 GLU CYS VAL ALA THR ASN SER ALA GLY THR ARG TYR SER SEQRES 16 A 212 ALA PRO ALA ASN LEU TYR VAL ARG GLY THR LYS HIS HIS SEQRES 17 A 212 HIS HIS HIS HIS SEQRES 1 B 212 GLU THR GLY GLU THR PRO PRO ARG PHE THR ARG THR PRO SEQRES 2 B 212 VAL ASP GLN THR GLY VAL SER GLY GLY VAL ALA SER PHE SEQRES 3 B 212 ILE CYS GLN ALA THR GLY ASP PRO ARG PRO LYS ILE VAL SEQRES 4 B 212 TRP ASN LYS LYS GLY LYS LYS VAL SER ASN GLN ARG PHE SEQRES 5 B 212 GLU VAL ILE GLU PHE ASP ASP GLY SER GLY SER VAL LEU SEQRES 6 B 212 ARG ILE GLN PRO LEU ARG THR PRO ARG ASP GLU ALA ILE SEQRES 7 B 212 TYR GLU CYS VAL ALA SER ASN ASN VAL GLY GLU ILE SER SEQRES 8 B 212 VAL SER THR ARG LEU THR VAL LEU ARG GLU ASP GLN ILE SEQRES 9 B 212 PRO ARG GLY PHE PRO THR ILE ASP MET GLY PRO GLN LEU SEQRES 10 B 212 LYS VAL VAL GLU ARG THR ARG THR ALA THR MET LEU CYS SEQRES 11 B 212 ALA ALA SER GLY ASN PRO ASP PRO GLU ILE THR TRP PHE SEQRES 12 B 212 LYS ASP PHE LEU PRO VAL ASP THR SER ASN ASN ASN GLY SEQRES 13 B 212 ARG ILE LYS GLN LEU ARG SER GLU SER ILE GLY ALA LEU SEQRES 14 B 212 GLN ILE GLU GLN SER GLU GLU SER ASP GLN GLY LYS TYR SEQRES 15 B 212 GLU CYS VAL ALA THR ASN SER ALA GLY THR ARG TYR SER SEQRES 16 B 212 ALA PRO ALA ASN LEU TYR VAL ARG GLY THR LYS HIS HIS SEQRES 17 B 212 HIS HIS HIS HIS HET PO4 A1221 5 HET PO4 B1221 5 HET PO4 B1222 5 HETNAM PO4 PHOSPHATE ION FORMUL 3 PO4 3(O4 P 3-) FORMUL 6 HOH *140(H2 O) HELIX 1 1 ARG A 117 ILE A 121 5 5 HELIX 2 2 GLU A 192 GLN A 196 5 5 HELIX 3 3 ASP B 75 GLY B 77 5 3 HELIX 4 4 ARG B 117 ILE B 121 5 5 HELIX 5 5 GLU B 192 GLN B 196 5 5 SHEET 1 AA 4 THR A 22 ARG A 28 0 SHEET 2 AA 4 ALA A 41 ASP A 50 -1 O GLN A 46 N THR A 27 SHEET 3 AA 4 GLY A 79 ILE A 84 -1 O SER A 80 N CYS A 45 SHEET 4 AA 4 PHE A 69 GLU A 73 -1 O GLU A 70 N ARG A 83 SHEET 1 AB 2 GLN A 33 VAL A 36 0 SHEET 2 AB 2 GLY A 105 LEU A 116 1 O ARG A 112 N GLN A 33 SHEET 1 AC 8 LYS A 62 LYS A 63 0 SHEET 2 AC 8 LYS A 54 LYS A 59 1 O LYS A 59 N LYS A 62 SHEET 3 AC 8 ALA A 94 ASN A 102 -1 O GLU A 97 N ASN A 58 SHEET 4 AC 8 GLY A 105 LEU A 116 -1 O GLY A 105 N ASN A 102 SHEET 5 AC 8 GLU B 106 LEU B 116 -1 O GLU B 106 N SER A 110 SHEET 6 AC 8 ALA B 94 SER B 101 -1 O ALA B 94 N LEU B 113 SHEET 7 AC 8 LYS B 54 LYS B 59 -1 O LYS B 54 N SER B 101 SHEET 8 AC 8 LYS B 62 LYS B 63 -1 O LYS B 62 N LYS B 59 SHEET 1 AD 5 LYS A 62 LYS A 63 0 SHEET 2 AD 5 LYS A 54 LYS A 59 1 O LYS A 59 N LYS A 62 SHEET 3 AD 5 ALA A 94 ASN A 102 -1 O GLU A 97 N ASN A 58 SHEET 4 AD 5 GLY A 105 LEU A 116 -1 O GLY A 105 N ASN A 102 SHEET 5 AD 5 GLN A 33 VAL A 36 1 O GLN A 33 N THR A 114 SHEET 1 BA 2 GLN B 33 VAL B 36 0 SHEET 2 BA 2 GLU B 106 LEU B 116 -1 O ARG B 112 N GLN B 33 SHEET 1 AE 6 LYS A 62 LYS A 63 0 SHEET 2 AE 6 LYS A 54 LYS A 59 1 O LYS A 59 N LYS A 62 SHEET 3 AE 6 ALA A 94 ASN A 102 -1 O GLU A 97 N ASN A 58 SHEET 4 AE 6 GLY A 105 LEU A 116 -1 O GLY A 105 N ASN A 102 SHEET 5 AE 6 GLU B 106 LEU B 116 -1 O GLU B 106 N SER A 110 SHEET 6 AE 6 GLN B 33 VAL B 36 -1 O GLN B 33 N THR B 114 SHEET 1 AF 4 THR A 127 MET A 130 0 SHEET 2 AF 4 ALA A 143 SER A 150 -1 O ALA A 148 N MET A 130 SHEET 3 AF 4 ILE A 183 ILE A 188 -1 O GLY A 184 N CYS A 147 SHEET 4 AF 4 ILE A 175 SER A 180 -1 O LYS A 176 N GLN A 187 SHEET 1 AG 4 LYS A 135 GLU A 138 0 SHEET 2 AG 4 ALA A 215 ARG A 220 1 O ASN A 216 N LYS A 135 SHEET 3 AG 4 GLY A 197 ASN A 205 -1 O GLY A 197 N LEU A 217 SHEET 4 AG 4 GLY A 208 TYR A 211 1 O GLY A 208 N ASN A 205 SHEET 1 AH 5 LYS A 135 GLU A 138 0 SHEET 2 AH 5 ALA A 215 ARG A 220 1 O ASN A 216 N LYS A 135 SHEET 3 AH 5 GLY A 197 ASN A 205 -1 O GLY A 197 N LEU A 217 SHEET 4 AH 5 GLU A 156 LYS A 161 -1 O GLU A 156 N THR A 204 SHEET 5 AH 5 LEU A 164 PRO A 165 -1 O LEU A 164 N LYS A 161 SHEET 1 AI 2 GLY A 208 TYR A 211 0 SHEET 2 AI 2 GLY A 197 ASN A 205 1 O ALA A 203 N ARG A 210 SHEET 1 BB 4 THR B 22 ARG B 28 0 SHEET 2 BB 4 ALA B 41 ASP B 50 -1 O GLN B 46 N THR B 27 SHEET 3 BB 4 GLY B 79 ILE B 84 -1 O SER B 80 N CYS B 45 SHEET 4 BB 4 PHE B 69 PHE B 74 -1 O GLU B 70 N ARG B 83 SHEET 1 BC 4 THR B 127 MET B 130 0 SHEET 2 BC 4 ALA B 143 SER B 150 -1 O ALA B 148 N MET B 130 SHEET 3 BC 4 ILE B 183 ILE B 188 -1 O GLY B 184 N CYS B 147 SHEET 4 BC 4 ILE B 175 SER B 180 -1 O LYS B 176 N GLN B 187 SHEET 1 BD 4 LYS B 135 GLU B 138 0 SHEET 2 BD 4 ALA B 215 ARG B 220 1 O ASN B 216 N LYS B 135 SHEET 3 BD 4 GLY B 197 ASN B 205 -1 O GLY B 197 N LEU B 217 SHEET 4 BD 4 GLY B 208 TYR B 211 1 O GLY B 208 N ASN B 205 SHEET 1 BE 5 LYS B 135 GLU B 138 0 SHEET 2 BE 5 ALA B 215 ARG B 220 1 O ASN B 216 N LYS B 135 SHEET 3 BE 5 GLY B 197 ASN B 205 -1 O GLY B 197 N LEU B 217 SHEET 4 BE 5 GLU B 156 LYS B 161 -1 O GLU B 156 N THR B 204 SHEET 5 BE 5 LEU B 164 PRO B 165 -1 O LEU B 164 N LYS B 161 SHEET 1 BF 2 GLY B 208 TYR B 211 0 SHEET 2 BF 2 GLY B 197 ASN B 205 1 O ALA B 203 N ARG B 210 SSBOND 1 CYS A 45 CYS A 98 1555 1555 2.01 SSBOND 2 CYS A 147 CYS A 201 1555 1555 1.99 SSBOND 3 CYS B 45 CYS B 98 1555 1555 2.02 SSBOND 4 CYS B 147 CYS B 201 1555 1555 2.00 CISPEP 1 ASP A 50 PRO A 51 0 1.78 CISPEP 2 GLN A 85 PRO A 86 0 -7.41 CISPEP 3 THR A 89 PRO A 90 0 6.41 CISPEP 4 ASN A 152 PRO A 153 0 -0.14 CISPEP 5 ASP B 50 PRO B 51 0 5.75 CISPEP 6 GLN B 85 PRO B 86 0 -7.64 CISPEP 7 THR B 89 PRO B 90 0 1.05 CISPEP 8 ASN B 152 PRO B 153 0 1.57 SITE 1 AC1 5 MET A 130 GLY A 131 GLN A 133 ARG B 141 SITE 2 AC1 5 THR B 142 SITE 1 AC2 6 ARG A 141 THR A 142 MET B 130 GLY B 131 SITE 2 AC2 6 GLN B 133 HOH B2064 SITE 1 AC3 5 GLU A 93 ALA A 94 ARG A 112 LEU A 113 SITE 2 AC3 5 THR A 114 CRYST1 161.157 31.724 92.323 90.00 111.97 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006205 0.000000 0.002503 0.00000 SCALE2 0.000000 0.031522 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011680 0.00000 MTRIX1 1 -0.999500 0.020300 -0.026000 146.66950 1 MTRIX2 1 0.021900 0.997900 -0.060600 -1.08250 1 MTRIX3 1 0.024700 -0.061100 -0.997800 39.09150 1