HEADER OXIDOREDUCTASE 18-MAR-11 2YDE TITLE FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH S-2-HYDROXYGLUTARATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOXIA-INDUCIBLE FACTOR 1-ALPHA INHIBITOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FACTOR INHIBITING HIF, FACTOR INHIBITING HIF-1, FIH-1, COMPND 5 HYPOXIA-INDUCIBLE FACTOR ASPARAGINE HYDROXYLASE; COMPND 6 EC: 1.14.11.16; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28A KEYWDS OXIDOREDUCTASE, NON-HEME IRON, DIOXYGENASE, METAL-BINDING, KEYWDS 2 TRANSCRIPTION, HELIX-LOOP-HELIX-BETA, DSBH, FACIAL TRIAD, KEYWDS 3 ASPARAGINYL/ ASPARTYL HYDROXYLASE, ANKYRIN REPEAT DOMAIN, ARD, BETA- KEYWDS 4 HYDROXYLATION, TRANSCRIPTION ACTIVATOR/INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR R.CHOWDHURY,I.J.CLIFTON,C.J.SCHOFIELD REVDAT 6 20-DEC-23 2YDE 1 REMARK LINK REVDAT 5 06-FEB-19 2YDE 1 REMARK REVDAT 4 30-JAN-19 2YDE 1 REMARK REVDAT 3 21-FEB-18 2YDE 1 JRNL REVDAT 2 11-MAY-11 2YDE 1 JRNL REVDAT 1 30-MAR-11 2YDE 0 JRNL AUTH R.CHOWDHURY,K.K.YEOH,Y.M.TIAN,L.HILLRINGHAUS,E.A.BAGG, JRNL AUTH 2 N.R.ROSE,I.K.LEUNG,X.S.LI,E.C.WOON,M.YANG,M.A.MCDONOUGH, JRNL AUTH 3 O.N.KING,I.J.CLIFTON,R.J.KLOSE,T.D.CLARIDGE,P.J.RATCLIFFE, JRNL AUTH 4 C.J.SCHOFIELD,A.KAWAMURA JRNL TITL THE ONCOMETABOLITE 2-HYDROXYGLUTARATE INHIBITS HISTONE JRNL TITL 2 LYSINE DEMETHYLASES. JRNL REF EMBO REP. V. 12 463 2011 JRNL REFN ESSN 1469-3178 JRNL PMID 21460794 JRNL DOI 10.1038/EMBOR.2011.43 REMARK 2 REMARK 2 RESOLUTION. 2.28 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.3 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.45 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 159752.890 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 26018 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.300 REMARK 3 FREE R VALUE TEST SET COUNT : 2447 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 9 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.28 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.37 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2228 REMARK 3 BIN R VALUE (WORKING SET) : 0.3420 REMARK 3 BIN FREE R VALUE : 0.3450 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 251 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.022 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2785 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 53 REMARK 3 SOLVENT ATOMS : 84 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.92000 REMARK 3 B22 (A**2) : -1.92000 REMARK 3 B33 (A**2) : 3.84000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.34 REMARK 3 ESD FROM SIGMAA (A) : 0.35 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.36 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.850 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 63.67 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 6 : S2G.PAR REMARK 3 PARAMETER FILE 7 : GOL.PAR REMARK 3 PARAMETER FILE 8 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : CARBOHYDRATE.TOP REMARK 3 TOPOLOGY FILE 6 : S2G.TOP REMARK 3 TOPOLOGY FILE 7 : GOL.TOP REMARK 3 TOPOLOGY FILE 8 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 2YDE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1290047758. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97630 REMARK 200 MONOCHROMATOR : SI (111) DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26018 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.280 REMARK 200 RESOLUTION RANGE LOW (A) : 42.450 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.7600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.28 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 0.53000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1H2K REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES PH7.5, 1.6M AMMONIUM REMARK 280 SULPHATE, 6% PEG400, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.02650 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 43.36350 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.36350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.51325 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.36350 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 43.36350 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 109.53975 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 43.36350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.36350 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 36.51325 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 43.36350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.36350 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 109.53975 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 73.02650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -162.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 7 CG CD OE1 OE2 REMARK 470 GLU A 15 CG CD OE1 OE2 REMARK 470 GLU A 19 OE1 OE2 REMARK 470 GLU A 29 CD OE1 OE2 REMARK 470 ARG A 40 CD NE CZ NH1 NH2 REMARK 470 GLU A 54 CG CD OE1 OE2 REMARK 470 GLU A 79 CG CD OE1 OE2 REMARK 470 ASN A 87 CG OD1 ND2 REMARK 470 LYS A 115 CG CD CE NZ REMARK 470 ASP A 134 CG OD1 OD2 REMARK 470 GLU A 142 OE1 OE2 REMARK 470 ARG A 156 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 157 CD CE NZ REMARK 470 ASN A 246 OD1 ND2 REMARK 470 GLU A 250 CD OE1 OE2 REMARK 470 GLU A 307 CG CD OE1 OE2 REMARK 470 GLU A 328 CD OE1 OE2 REMARK 470 LYS A 345 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 10 55.53 -98.87 REMARK 500 PHE A 100 69.91 -105.97 REMARK 500 ILE A 210 -56.01 -121.75 REMARK 500 ARG A 238 -12.15 90.22 REMARK 500 PRO A 267 113.07 -36.23 REMARK 500 TYR A 276 -3.09 80.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 199 NE2 REMARK 620 2 ASP A 201 OD2 108.6 REMARK 620 3 HIS A 279 NE2 75.2 83.7 REMARK 620 4 S2G A 601 O2 157.7 91.0 96.9 REMARK 620 5 S2G A 601 O3 83.8 167.6 99.7 76.9 REMARK 620 6 GOL A 604 O3 83.3 75.9 143.8 112.8 106.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE S2G A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE S2G A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 905 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2WA4 RELATED DB: PDB REMARK 900 FACTOR INHIBITING HIF-1 ALPHA WITH N,3- DIHYDROXYBENZAMIDE REMARK 900 RELATED ID: 2Y0I RELATED DB: PDB REMARK 900 FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH TANKYRASE-2 (TNKS2) REMARK 900 FRAGMENT PEPTIDE (21-MER) REMARK 900 RELATED ID: 2W0X RELATED DB: PDB REMARK 900 FACTOR INHIBITING HIF-1 ALPHA WITH PYRIDINE 2,4 DICARBOXYLIC ACID REMARK 900 RELATED ID: 2CGN RELATED DB: PDB REMARK 900 FACTOR INHIBITING HIF-1 ALPHA WITH SUCCINATE REMARK 900 RELATED ID: 2WA3 RELATED DB: PDB REMARK 900 FACTOR INHIBITING HIF-1 ALPHA WITH 2-(3-HYDROXYPHENYL )-2-OXOACETIC REMARK 900 ACID REMARK 900 RELATED ID: 2CGO RELATED DB: PDB REMARK 900 FACTOR INHIBITING HIF-1 ALPHA WITH FUMARATE REMARK 900 RELATED ID: 1IZ3 RELATED DB: PDB REMARK 900 DIMERIC STRUCTURE OF FIH (FACTOR INHIBITING HIF) REMARK 900 RELATED ID: 1H2M RELATED DB: PDB REMARK 900 FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH HIF-1 ALPHA FRAGMENT REMARK 900 PEPTIDE REMARK 900 RELATED ID: 1MZE RELATED DB: PDB REMARK 900 HUMAN FACTOR INHIBITING HIF (FIH1) REMARK 900 RELATED ID: 1MZF RELATED DB: PDB REMARK 900 HUMAN FACTOR INHIBITING HIF (FIH1) IN COMPLEX WITH 2- OXOGLUTARATE REMARK 900 RELATED ID: 2YC0 RELATED DB: PDB REMARK 900 FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH R-2- HYDROXYGLUTARATE REMARK 900 RELATED ID: 1H2N RELATED DB: PDB REMARK 900 FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH HIF-1 ALPHA FRAGMENT REMARK 900 PEPTIDE REMARK 900 RELATED ID: 1YCI RELATED DB: PDB REMARK 900 FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH N-( CARBOXYCARBONYL)- REMARK 900 D-PHENYLALANINE REMARK 900 RELATED ID: 1H2K RELATED DB: PDB REMARK 900 FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH HIF-1 ALPHA FRAGMENT REMARK 900 PEPTIDE REMARK 900 RELATED ID: 1H2L RELATED DB: PDB REMARK 900 FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH HIF-1 ALPHA FRAGMENT REMARK 900 PEPTIDE REMARK 900 RELATED ID: 2XUM RELATED DB: PDB REMARK 900 FACTOR INHIBITING HIF (FIH) Q239H MUTANT IN COMPLEX WITH ZN(II), REMARK 900 NOG AND ASP-SUBSTRATE PEPTIDE (20-MER) DBREF 2YDE A 1 349 UNP Q9NWT6 HIF1N_HUMAN 1 349 SEQADV 2YDE GLY A -2 UNP Q9NWT6 EXPRESSION TAG SEQADV 2YDE SER A -1 UNP Q9NWT6 EXPRESSION TAG SEQADV 2YDE HIS A 0 UNP Q9NWT6 EXPRESSION TAG SEQRES 1 A 352 GLY SER HIS MET ALA ALA THR ALA ALA GLU ALA VAL ALA SEQRES 2 A 352 SER GLY SER GLY GLU PRO ARG GLU GLU ALA GLY ALA LEU SEQRES 3 A 352 GLY PRO ALA TRP ASP GLU SER GLN LEU ARG SER TYR SER SEQRES 4 A 352 PHE PRO THR ARG PRO ILE PRO ARG LEU SER GLN SER ASP SEQRES 5 A 352 PRO ARG ALA GLU GLU LEU ILE GLU ASN GLU GLU PRO VAL SEQRES 6 A 352 VAL LEU THR ASP THR ASN LEU VAL TYR PRO ALA LEU LYS SEQRES 7 A 352 TRP ASP LEU GLU TYR LEU GLN GLU ASN ILE GLY ASN GLY SEQRES 8 A 352 ASP PHE SER VAL TYR SER ALA SER THR HIS LYS PHE LEU SEQRES 9 A 352 TYR TYR ASP GLU LYS LYS MET ALA ASN PHE GLN ASN PHE SEQRES 10 A 352 LYS PRO ARG SER ASN ARG GLU GLU MET LYS PHE HIS GLU SEQRES 11 A 352 PHE VAL GLU LYS LEU GLN ASP ILE GLN GLN ARG GLY GLY SEQRES 12 A 352 GLU GLU ARG LEU TYR LEU GLN GLN THR LEU ASN ASP THR SEQRES 13 A 352 VAL GLY ARG LYS ILE VAL MET ASP PHE LEU GLY PHE ASN SEQRES 14 A 352 TRP ASN TRP ILE ASN LYS GLN GLN GLY LYS ARG GLY TRP SEQRES 15 A 352 GLY GLN LEU THR SER ASN LEU LEU LEU ILE GLY MET GLU SEQRES 16 A 352 GLY ASN VAL THR PRO ALA HIS TYR ASP GLU GLN GLN ASN SEQRES 17 A 352 PHE PHE ALA GLN ILE LYS GLY TYR LYS ARG CYS ILE LEU SEQRES 18 A 352 PHE PRO PRO ASP GLN PHE GLU CYS LEU TYR PRO TYR PRO SEQRES 19 A 352 VAL HIS HIS PRO CYS ASP ARG GLN SER GLN VAL ASP PHE SEQRES 20 A 352 ASP ASN PRO ASP TYR GLU ARG PHE PRO ASN PHE GLN ASN SEQRES 21 A 352 VAL VAL GLY TYR GLU THR VAL VAL GLY PRO GLY ASP VAL SEQRES 22 A 352 LEU TYR ILE PRO MET TYR TRP TRP HIS HIS ILE GLU SER SEQRES 23 A 352 LEU LEU ASN GLY GLY ILE THR ILE THR VAL ASN PHE TRP SEQRES 24 A 352 TYR LYS GLY ALA PRO THR PRO LYS ARG ILE GLU TYR PRO SEQRES 25 A 352 LEU LYS ALA HIS GLN LYS VAL ALA ILE MET ARG ASN ILE SEQRES 26 A 352 GLU LYS MET LEU GLY GLU ALA LEU GLY ASN PRO GLN GLU SEQRES 27 A 352 VAL GLY PRO LEU LEU ASN THR MET ILE LYS GLY ARG TYR SEQRES 28 A 352 ASN HET FE A 501 1 HET S2G A 601 10 HET S2G A 602 10 HET GOL A 603 6 HET GOL A 604 6 HET SO4 A 901 5 HET SO4 A 902 5 HET SO4 A 903 5 HET SO4 A 905 5 HETNAM FE FE (III) ION HETNAM S2G (2S)-2-HYDROXYPENTANEDIOIC ACID HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 FE FE 3+ FORMUL 3 S2G 2(C5 H8 O5) FORMUL 5 GOL 2(C3 H8 O3) FORMUL 7 SO4 4(O4 S 2-) FORMUL 11 HOH *84(H2 O) HELIX 1 1 MET A 1 ALA A 10 1 10 HELIX 2 2 GLU A 19 LEU A 23 5 5 HELIX 3 3 ASP A 28 LEU A 32 5 5 HELIX 4 4 ASP A 49 ASN A 58 1 10 HELIX 5 5 VAL A 70 TRP A 76 5 7 HELIX 6 6 ASP A 77 ILE A 85 1 9 HELIX 7 7 ASP A 104 MET A 108 5 5 HELIX 8 8 PHE A 125 ARG A 138 1 14 HELIX 9 9 GLY A 155 GLY A 164 1 10 HELIX 10 10 ASN A 166 GLY A 178 1 13 HELIX 11 11 PRO A 220 ASP A 222 5 3 HELIX 12 12 GLN A 223 TYR A 228 1 6 HELIX 13 13 PHE A 252 VAL A 258 5 7 HELIX 14 14 LYS A 311 LEU A 330 1 20 HELIX 15 15 ASN A 332 GLN A 334 5 3 HELIX 16 16 GLU A 335 LYS A 345 1 11 SHEET 1 AA 5 THR A 39 PRO A 41 0 SHEET 2 AA 5 GLY A 260 VAL A 265 1 O GLY A 260 N ARG A 40 SHEET 3 AA 5 LYS A 214 PHE A 219 -1 O LYS A 214 N VAL A 265 SHEET 4 AA 5 TRP A 278 SER A 283 -1 O TRP A 278 N PHE A 219 SHEET 5 AA 5 VAL A 195 HIS A 199 -1 O THR A 196 N ILE A 281 SHEET 1 AB 9 ARG A 44 LEU A 45 0 SHEET 2 AB 9 VAL A 62 LEU A 64 1 O VAL A 63 N LEU A 45 SHEET 3 AB 9 VAL A 270 ILE A 273 -1 O VAL A 270 N LEU A 64 SHEET 4 AB 9 GLN A 204 LYS A 211 -1 O ASN A 205 N ILE A 273 SHEET 5 AB 9 THR A 290 TYR A 297 -1 O ILE A 291 N ILE A 210 SHEET 6 AB 9 LEU A 186 GLY A 190 -1 O LEU A 186 N ASN A 294 SHEET 7 AB 9 ARG A 143 THR A 149 -1 O LEU A 146 N ILE A 189 SHEET 8 AB 9 ASP A 89 ALA A 95 -1 O SER A 91 N GLN A 147 SHEET 9 AB 9 SER A 118 LYS A 124 -1 O ASN A 119 N SER A 94 SHEET 1 AC 6 ARG A 44 LEU A 45 0 SHEET 2 AC 6 VAL A 62 LEU A 64 1 O VAL A 63 N LEU A 45 SHEET 3 AC 6 VAL A 270 ILE A 273 -1 O VAL A 270 N LEU A 64 SHEET 4 AC 6 GLN A 204 LYS A 211 -1 O ASN A 205 N ILE A 273 SHEET 5 AC 6 THR A 290 TYR A 297 -1 O ILE A 291 N ILE A 210 SHEET 6 AC 6 LEU A 182 SER A 184 -1 N THR A 183 O TRP A 296 LINK NE2 HIS A 199 FE FE A 501 1555 1555 2.27 LINK OD2 ASP A 201 FE FE A 501 1555 1555 2.17 LINK NE2 HIS A 279 FE FE A 501 1555 1555 2.41 LINK FE FE A 501 O2 S2G A 601 1555 1555 2.10 LINK FE FE A 501 O3 S2G A 601 1555 1555 2.10 LINK FE FE A 501 O3 GOL A 604 1555 1555 2.36 CISPEP 1 TYR A 308 PRO A 309 0 -0.16 SITE 1 AC1 5 HIS A 199 ASP A 201 HIS A 279 S2G A 601 SITE 2 AC1 5 GOL A 604 SITE 1 AC2 13 TYR A 145 THR A 196 HIS A 199 ASP A 201 SITE 2 AC2 13 ASN A 205 PHE A 207 LYS A 214 HIS A 279 SITE 3 AC2 13 ILE A 281 ASN A 294 TRP A 296 FE A 501 SITE 4 AC2 13 GOL A 604 SITE 1 AC3 2 GLN A 148 THR A 149 SITE 1 AC4 5 LYS A 99 TYR A 230 SER A 240 GLN A 241 SITE 2 AC4 5 ASP A 243 SITE 1 AC5 6 GLN A 147 HIS A 199 ASP A 201 TRP A 296 SITE 2 AC5 6 FE A 501 S2G A 601 SITE 1 AC6 6 ASP A 222 LYS A 311 ALA A 312 HOH A2081 SITE 2 AC6 6 HOH A2082 HOH A2083 SITE 1 AC7 4 ARG A 138 GLY A 140 GLU A 141 GLU A 142 SITE 1 AC8 3 LYS A 107 ARG A 320 LYS A 324 SITE 1 AC9 5 ARG A 143 GLU A 192 GLY A 193 LEU A 285 SITE 2 AC9 5 ASN A 286 CRYST1 86.727 86.727 146.053 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011530 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011530 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006847 0.00000